Phylostratigraphic analysis is a way to look anew on phylogenetic data in the evolutionary aspect. It allows counting the evolutionary age based on the analysis of genes, their orthologs and finding the last common ancestor. We performed phylostratigraphic analysis of Arabidopsis thaliana genes associated with several types of abiotic stresses (heat, cold, water-related, light, osmotic, salt, and oxidative) determined by the Gene Ontology annotation. Comparison of the distributions of ages of genes associated with stresses of different type has shown the heat stress to involve older genes while the light stress – younger genes. At the same time, all types of stress are characterized by a significantly higher proportion of old genes (common to all eukaryotes) compared to the whole set of A.thaliana genes. This can be explained by the involvement of basic molecular processes in plant cells into the stress response. Reconstruction and graphical analysis of the gene network of the heat stress educed several clusters associated with different response functions. Some of these clusters contain only ancient genes. The results obtained show that the phylostratigraphic analysis reveals the fundamental features of the organization of gene networks and their evolution.

Graphs are largely used in computer science to model relations, or associations, among entities the compose complex systems. More recently, they found a broad field of application in bioinformatics and medical informatics supporting modelling, analysis of many systems. The applications span from representing interactions among molecules within cells, to model the functions of the brains. In order to support research, algorithms from graph theory that are able to extract knowledge from network should be coupled to efficient visualisation techniques. Although the importance of such topic, we retain that many challenges should be faced in the futures, such as automated pathway and network layout to better match biologists’ needs, the developing of a standard able to give more and better choices to represent nodes, edges finally, the developing of automated mechanism able to improve the network navigation methods that help users manage large and complex networks with the goal to improve the usability.

Although suicide is a major public health issue worldwide, we understand little of the onset and development of suicidal behavior. Suicidal behavior is argued to be the end result of the complex interaction between psychological, social and biological factors. Epidemiological studies resulted in a range of risk factors for suicidal behavior, but we do not yet understand how their interaction increases the risk for suicidal behavior. A new approach called network analysis can help us better understand this process as it allows to visualize and quantify complex association between many different symptoms or risk factors. A network analysis of data contain information on suicidal patients can help us understand how risk factors interact and how their interaction is related to suicidal thoughts and behaviour. A network perspective has been successfully applied to the field of depression and psychosis, but not yet to the field of suicidology. In this theoretical article, I will introduce the concept of network analysis to the field of suicide prevention, and offer directions for future applications and studies.

Lysine is the first limiting essential amino acid in rice because it is present in the lowest quantity compared to all the other amino acids. Amino acids are the building block of proteins and play an essential role in maintaining the human body’s healthy functioning. Rice is a staple food for large proportion of the global population, thus increasing the lysine content in rice will improve its nutritional value. In this paper, we studied the lysine biosynthesis pathway in rice (Oryza Sativa) to identify the regulators of the lysine reporter gene LYSA (LOC_Os02g24354). Genetically intervening at the regulators has the potential to increase the overall lysine content in rice. We modeled the lysine biosynthesis pathway in rice seedlings under normal and saline (NaCl) stress conditions using Bayesian networks. We estimated the model parameters using experimental data and identified the gene DAPF(LOC_Os12g37960) as a positive regulator of the lysine reporter gene LYSA under both normal and saline stress conditions. Based on this analysis, we conclude that the gene DAPF is a potent candidate for genetic intervention. Upregulating DAPF using methods such as CRISPR-Cas9 has the potential to upregulate the lysine reporter gene LYSA and increase the overall lysine content in rice.

One of the most serious concerns about mega event-related changes to small cities is how to effectively utilize newly developed public attractions after the Olympic Games. Making connections with existing local amenities and forming attraction networks can be effective strategies for continuing a city’s revitalization. However, despite the expected benefits, attraction network research shows that these benefits often fail to materialize. With the case of Gangneung, a 2018 winter Olympic hosting city, this study investigated visitation patterns to nineteen selected attractions using network analysis. The results indicate that the most influential nodes are located on the northern coast, the eastern coast, and in the south downtown area, those nodes being the central locations where the strongest of connections are made. New attractions such as the Olympic Park and Walwha Linear Park were rather isolated. While seasonal and periodic variations, visitors’ residences, and destination choice attitudes had a significant effect on visitation patterns, the attraction networks, modes of transportation, proximity to region, and type similarity were not significant factors in the forming of visitation patterns. The results make a methodological contribution to tourist behavior and network research. In addition, beyond individual attraction development, the results provide practical implications in regard to networking and cooperation between multiple attractions using temporal and spatial strategies such as management/investment prioritizing, travel route development, and program scheduling.

Recent brain imaging findings by using different methods (e.g., fMRI and PET) have suggested that social anxiety disorder (SAD) is correlated with alterations in regional or network-level brain function. However, due to many limitations associated with these methods, such as poor temporal resolution and limited number of samples per second, neuroscientists could not quantify the fast dynamic connectivity of causal information networks in SAD. In this study, SAD-related changes in brain connections within the default mode network (DMN) were investigated using eight electroencephalographic (EEG) regions of interest. Partial directed coherence (PDC) was used to assess the causal influences of DMN regions on each other and indicate the changes in the DMN effective network related to SAD severity. The DMN is a large-scale brain network basically composed of the mesial prefrontal cortex (mPFC), posterior cingulate cortex (PCC)/precuneus, and lateral parietal cortex (LPC). The EEG data were collected from 88 subjects (22 control, 22 mild, 22 moderate, 22 severe) and used to estimate the effective connectivity between DMN regions at different frequency bands: delta (1–3 Hz), theta (4–8 Hz), alpha (8–12 Hz), low beta (13–21 Hz), and high beta (22–30 Hz). Among the healthy control (HC) and the three considered levels of severity of SAD, the results indicated a higher level of causal interactions for the mild and moderate SAD groups than for the severe and HC groups. Between the control and the severe SAD groups, the results indicated a higher level of causal connections for the control throughout all the DMN regions. We found significant increases in the mean PDC in the delta (p = 0.009) and alpha (p = 0.001) bands between the SAD groups. Among the DMN regions, the precuneus exhibited a higher level of causal influence than other regions. Therefore, it was suggested to be a major source hub that contributes to the mental exploration and emotional content of SAD. In contrast to the severe group, HC exhibited higher resting-state connectivity at the mPFC, providing evidence for mPFC dysfunction in the severe SAD group. Furthermore, the total Social Interaction Anxiety Scale (SIAS) was positively correlated with the mean values of the PDC of the severe SAD group, r (22) = 0.576, p = 0.006 and negatively correlated with those of the HC group, r (22) = −0.689, p = 0.001. The reported results may facilitate greater comprehension of the underlying potential SAD neural biomarkers and can be used to characterize possible targets for further medication.

The COVID-2019 disease caused by the SARS-CoV-2 virus (aka 2019-nCoV) has raised significant health concerns in China and worldwide. While novel drug discovery and vaccine studies are long, repurposing old drugs against the COVID-2019 epidemic can help identify treatments, with known preclinical, pharmacokinetic, pharmacodynamic, and toxicity profiles, which can rapidly enter Phase 3 or 4 or can be used directly in clinical settings. In this study, we presented a novel network based drug repurposing platform to identify potential drugs for the treatment of COVID-2019. We first analysed the genome sequence of SARS-CoV-2 and identified SARS as the closest disease, based on genome similarity between both causal viruses, followed by MERS and other human coronavirus diseases. Using our AutoSeed pipeline (text mining and database searches), we obtained 34 COVID-2019-related genes. Taking those genes as seeds, we automatically built a molecular network for which our module detection and drug prioritization algorithms identified 24 disease-related human pathways, five modules and finally suggested 78 drugs to repurpose. Following manual filtering based on clinical knowledge, we re-prioritized 30 potential repurposable drugs against COVID-2019 (including pseudoephedrine, andrographolide, chloroquine, abacavir, and thalidomide) . We hope that this data can provide critical insights into SARS-CoV-2 biology and help design rapid clinical trials of treatments against COVID-2019.

Tracking information diffusion is a non-trivial task and it has been widely studied across different domains and platforms. The advent of social media has led to even more challenges, given the higher speed of information propagation and the growing impact of social bots and anomalous accounts. Nevertheless, it is crucial to derive a trustworthy information diffusion graph, which is capable of highlighting the importance of specific nodes in spreading the original message. The paper introduces the interaction strength, a novel metric to model retweet cascade graphs by exploring users’ interactions. Initial findings show the soundness of the approaches based on this new metric with respect to the state-of-the-art model, and its ability to generate a denser graph, revealing crucial nodes that participated in the retweet propagation. Reliable retweet graph generation will enable a better understanding of the diffusion path of a specific tweet.

Since the process of waste recycling generates dust and flammable gas during fragmentation, there is always a risk of fire resulting therefrom, and fire does, in fact, frequently occur. However, research on disaster management at recycling facilities deals only with the problem of processing systems from a technical point of view, but it does not suggest concrete alternatives from a management point of view. Therefore, in this study, we analyzed the influence of the disaster response network of a waste recycling center at the organizational level based on the concept of the cognitive accuracy of a network when considering administrative aspects. Through this analysis, we confirmed that factors affecting the influence of the network exist, such that the entire network and the networks of different levels of position are different. We suggest that this can be improved by deploying members who perform formal tasks at the center of the network so that everyone can agree political approach.

Open source software such as OpenDSS has given a lot of help to distribution network researchers and educators. With high penetration of distributed renewable energy resources into distribution network, tradition distribution steady state analysis software such as OpenDSS is faced with difficulty in handling distributed generators. Three-phase distributed generators are often modeled in sequence frame while unbalanced distribution network are usually modeled in phase frame. So a load flow in sequence-phase coupled frame is proposed to handle models described in both frames. Voltage controlled DGs which are difficult to cope with in OpenDSS are handled in proposed program. The steady state analysis platform is programmed with open source Modelica language and the main aim of this paper is to introduce an open source platform for active distribution network steady analysis include load flow and short circuit analysis which can be easily adopted and improved by other educators and researchers.

This article presents new PEM fuel cell models with hexagonal and pentagonal designs. After observing cell performance improvement in these models, we optimized them. Inlet pressure and temperature were used as input parameters, and consumption and output power were the target parameters of the multi-objective optimization algorithm. Then we used artificial intelligence techniques, including deep neural networks and polynomial regression, to model the data. Next, we employed the RSM (Response Surface Method) method to derive the target functions. Furthermore, we applied the NSGA-II multi-objective genetic algorithm to optimize the targets. Compared to the base model (Cubic), the optimized Pentagonal and Hexagonal models averagely increase the output current density by 21.819\% and 39.931\%, respectively.

The diagnosis of papillary thyroid carcinoma has always been a concerned and challenging issue and it is very important and meaningful to have a definite diagnosis before the operation. In this study, we tried to use an artificial intelligence algorithm instead of medical statistics to analyze the genetic fingerprint from gene chip results to identify papillary thyroid carcinoma. We trained 20 artificial neural network models with differential genes and other important genes related to the cell metabolic cycle as the list of input features, and apply them to the diagnosis of papillary thyroid cancer in the independent validation data set. The results showed that when we used the DEGs and all genes lists as input features the models got the best diagnostic performance with AUC=98.97% and 99.37% and the accuracy were both 96%. This study revealed that the proposed artificial neural network models constructed with genetic fingerprints could achieve a prediction of papillary thyroid carcinoma. Such models can support clinicians to make more accurate clinical diagnoses. At the same time, it provides a novel idea for the application of artificial intelligence in clinical medicine.

The emerging use of visualization techniques in pathology and microbiol- ogy has been accelerated by machine learning (ML) approaches towards image preprocessing, classification, and feature extraction in an increasingly complex series of datasets. Modern Convolutional Neural Network (CNN) architectures have developed into an umbrella of vast image reinforcement and recognition methods, including a combined classification-localization of single/multi-object featured images. As a subtype neural network, CNN cre- ates a rapid order of complexity by initially detecting borderlines, edges, and colours in images for dataset construction, eventually capable in mapping intricate objects and conformities. This paper investigates the disparities between Tensorflow object detection APIs, exclusively, Single Shot Detector (SSD) Mobilenet V1 and the Faster RCNN Inception V2 model, to sample computational drawbacks in accuracy-precision vs. real time visualization capabilities. The situation of rapid ML medical image analysis is theoretically framed in regions with limited access to pathology and disease prevention departments (e.g. 3rd world and impoverished countries). Dark field mi- croscopy datasets of an initial 62 XML-JPG annotated training files were processed under Malaria and Syphilis classes. Model trainings were halted as soon as loss values were regularized and converged.

In this paper analyses the characteristic of EM waves propagation in structured environment to identify the signal interference by the structure, and suggests the EM waves attenuation model considering the distance and penetration loss by the structure. The range sensor based on electromagnetic(EM) waves attenuation along to the distance showed the precise distance estimation with high resolution depending on the distance. However, it is hard to use in structured environments due to the lack of consideration of the EM waves attenuation characteristics in the structured underwater environment. In this paper, EM waves propagation characteristic and signal interference effects by the structures were analyzed, and the EM waves distance-attenuation model in structured environment was suggested with sensor installation guideline. The EM waves propagation characteristics and proposed sensor model were verified by the several experiments, and the localization result in structured environment showed the more reliable performance.

Lily tepals have a short lifespan. Once the tepals senesce, the ornamental value of the flower is lost. Some cultivars have attractive purple ovaries and fruits which greatly enhance the ornamental value of Asiatic hybrid lilies. However, little is known about the molecular mechanisms of anthocyanin biosynthesis in Asiatic hybrid lily ovaries. To investigate the transcriptional network that governs purple ovary coloration in Asiatic hybrid lilies, we obtained transcriptome data from green ovaries (S1) and purple ovaries (S2) of Asiatic ‘Tiny Padhye’. Comparative transcriptome analysis revealed 4228 differentially expressed genes. Differential expression analysis revealed that nine unigenes including four CHS genes, one CHI gene, one F3H gene, one F3′H gene, one DFR gene, and one UFGT gene were significantly up-regulated in purple ovaries. One MYB gene, LhMYB12-Lat, was identified as a key transcription factor determining the distribution of anthocyanins in Asiatic hybrid lily ovaries. Further qPCR results showed unigenes related to anthocyanin biosynthesis were highly expressed in purple ovaries of Asiatic ‘Tiny Padhye’ at stages 2 and 3, while they showed an extremely low level of expression in ovaries of Asiatic ‘Yellow Pixels’ during all developmental stages. In addition, shading treatment significantly decreased pigment accumulation by suppressing the expression of several unigenes related to anthocyanin biosynthesis in ovaries of Asiatic ‘Tiny Padhye’. These results could further our understanding of the molecular mechanisms of anthocyanin biosynthesis in Asiatic hybrid lily ovaries.

The key issue in the post-genomic era is how to systematically describe the association between small molecule transcripts or translations inside cells. With the rapid development of high-throughput “omics” technologies, the achieved ability to detect and characterize molecules with other molecule targets opens up the possibility of investigating the relationships between different molecules from a global perspective. In this article, a Molecular Associations Network(MAN) is constructed and comprehensively analyzed by integrating the associations among miRNA, lncRNA, protein, drug, and disease, in which any kind of potential associations can be predicted. More specifically, each node in MAN can be represented as a vector by combining two kinds of information including the attributes of the node itself (e.g. sequences of ncRNAs and proteins, semantics of diseases and molecular fingerprints of drugs) and the manner of the node in the complex network (associations with other nodes). Random Forest classifier is trained to classify and predict new interactions or associations between biomolecules. In the experiment, the proposed method achieves a superb performance with 0.9735 AUC in 5-fold cross-validation, which show that the proposed method can provide new insight for exploration of the molecular mechanisms of disease and valuable clues for disease treatment.

Recent studies supported a clinical association between Parkinson’s Disease (PD) and periodontitis. Hence, investigating possible protein interactions between these two conditions is of interest. In this study, we conducted a protein-protein network interaction analysis with recognized genes encoding proteins for PD and periodontitis. Genes of interest were collected via GWAS database. Then, we conducted a protein interaction analysis using STRING database, with a highest confidence cut-off of 0.9. Our protein network casted a comprehensive analysis of potential protein-protein interactions between PD and periodontitis. This analysis may underpin valuable information for new candidate molecular mechanisms between PD and periodontitis and may serve new potential targets for research purposes. These results should be carefully interpreted giving the limitations of this approach.

Surrogate model based optimization method is widely-used to accelerate the design and optimization process~\cite{marler2004survey}. The input of regression model used in the surrogate model are numbers, which requires users to parametrize the geometries. In this paper, a new parameterization-free surrogate model is introduced and its corresponding uncertainty quantification and sensitivity analysis method are discussed. The input of new surrogate model methods is surface mesh of simulation domain. \Gls{gnns} is used to extract geometric information, and \Gls{cnns} is used to predict contours. This framework bypasses parameterization,as a consequence, uncertainties introduced by manual parameterization is reduced. However, such changes compared with conventional surrogate model methods impose great challenge on uncertainties quantification and sensitivity analysis. Uncertainties quantification in this paper means the error bar of prediction results, which is calculated by Gaussian Process Regression method in current surrogate method. In this paper, a new quantification method achieved by Kullback-Leibler divergence (KLD) is introduced. And the sensitivity analysis is conducted by Automatic Differentiation, which gives a Jacobian matrix of inputs. The method and analysis mentioned above are demonstrated by a low-pressure steam turbine rotator and its exhaust system.

Considering characteristics of high river density, special underlying surface in plain river network region, and municipal drainage system function, river network drainage unit model is proposed, which is defined as a region surrounded by main river or embankment. Flood storage variety and control projects regulation of small rivers in each unit is simulated. With drainage catchment as an object, according to its drainage capacity, simplified municipal drainage model was developed. Coupling river network drainage unit model, simplified municipal drainage model and 2D flood routing model, urban flood analysis model for plain tidal river network region was developed, which could be applied to analyzing flood from upstream river, storm surge and local rainfall. Demonstration research was carried out in Puxi flood protected area in Shanghai.

The clinical interaction between stroke and periodontitis has been consistently studied and confirmed. Hence, forecasting potentially new protein interactions in this association using bioinformatic strategies presents potential interest. In this exploratory study, we conducted a protein-protein network interaction (PPI) search with documented encoded proteins for both stroke and periodontitis. Genes of interest were collected via GWAS database. The STRING database was used to predict the PPI networks, first in a sensitivity purpose (confidence cut-off of 0.7), and then with a highest confidence cut-off (0.9). Genes over-representation was inspected in the final network. As a result, we foresee a prospective protein network of interaction between stroke and periodontitis. Inflammation, pro-coagulant/pro-thrombotic state and ultimately atheroma plaque rupture is the main biological mechanism derived from the network. These pilot results may pave the way to future molecular and therapeutic studies to further comprehend the mechanisms between these two conditions.

Background. Upper respiratory infections (URIs) remains as significant cause of morbidity in children. Evidence on efficacy of probiotics to prevent URIs in children is increasing. This systematic review was assembled to analyze evidence about the efficacy of probiotics to reduce duration of upper respiratory infections in ambulatory children. Methods. Randomized controlled trials (RCTs) comparing probiotics vs. placebo to prevent URIs, published between 2001 and 2016 were considered. Quality evaluation was evaluated using CONSORT. Standard mean difference (SMD) or risk ratio (RR) was calculated. Network Meta-Analysis (NMA), using a random effect model was assembled. Results. 31 RCTs were evaluated and 20 studies were included with 3,635 children randomized to probiotics and 3,433 to placebo. Lactobacillus reuteri [SMD -0.56 CI95% (-0.72 to -0.41), p 0.0001] and Lactobacillus acidophillus [SMD -0.33 CI95% (-0.60 to -0.06), p 0.01] were superior to placebo to reduce duration of URIs. L. rhamnosus GG showed tendency [SMD -0.14 CI95% (-0.28 to 0.0), p 0.048]. On the network forest plot L. reuteri showed preventive equivalence when was compared to L. rhamnosus GG, L. casei and BB12. Conclusions. Lactobacillus reuteri, Lactobacillus rhamnosus GG and Bifidobacterium BB12 are evidence-based alternatives to be considered to prevent URIs in children.

Abstract: Background: Pain management is one of the main parts of treatments for Temporomandibular Disorders (TMDs). However, there is still a lack of high-quality evidence that compare the overall effects of these non-surgical treatments. The objective of this systematic review is to identify the most potential treatment protocol in dealing with pain caused by TMDs through a mixed comparison of interventions based on network meta-analysis. Methods: A systematic review and network meta-analysis of studies identified by searching PubMed, Embase, Medline, Ovid, and CINAHL. All the included studies should have characteristics that: (1) participants with TMDs of any age; (2) non-surgical treatments; (3) score of Visual Analog Scale (VAS) as the outcome measure; (4) randomized controlled trials. The Cochrane Bias Assessment Toll was used to assess the bias, the CINeMA website was applied to rate the confidence of evidence, and ADDIS software was used to conduct the network meta-analysis. Results: 46 studies were included in this review. The agreement between authors reached a kappa value of 0.78. The results of the network meta-analysis showed that wearable therapy devices are more likely to be the best choice for reducing the pain of patients with myogenic TMDs, whereas a combination of platelet-rich plasma injection and wearable therapy devices is more likely to be the best choice for reducing the pain in a long term after treatment for patients with mix-type TMDs. Moreover, the application of therapy equipment has the most potential in reducing pain in a long term after treatment for patients with articular TMDs. Discussion: Wearable devices have a great potential for pain syndrome caused by TMDs, the mechanism might come from a biomechanical perspective. However, the overall confidence rating of evidence is low. Studies with high quality are still needed in the future. Other: The PROSPERO Registration Number of this systematic review is CRD42021253442.

In recent years, with the development of social media, people are more and more inclined to upload text, pictures and videos on the platform to express their personal emotions, thus the number of short videos is increasing and becoming the first choice for people to socialize. Unlike the traditional way, people can convey their personal emotions and opinions through media other than words, such as video images, etc. for external information. Therefore, the expression and analysis of emotions is not only through text, but also through the analysis of emotional needs in images and videos, and the research scholars have customized products for individual users. Compared with pure text content, video information can more intuitively express users' happiness, anger and sorrow, thus short video-related applications have gained more and more popularity among Internet users in recent years. However, not all short videos on social networking sites can accurately express users' emotions, and related text information can more accurately assist sentiment analysis and thus improve accuracy. However, short video sentiment analysis based on video frame images is inaccurate in some scenarios, such as when expressing tears of joy, the sentiment expressed by the user's facial expression and voice are different, which will cause errors in the analysis of sentiment. As a result, researchers began to consider multimodal sentiment analysis to reduce the impact of the above scenarios on short video sentiment analysis. This paper focuses on proposing a sentiment analysis method for short videos. We first propose a residual attention model to make full use of the information in audio to classify the emotions contained in them. Then the text information in the dataset is classified by feature extraction. The key to extract features from text information is not only to retain the semantic information of the text, but also to explore the potential emotional information in the text, so as to ensure the integrity of the text information features. The experiments show that the sentiment analysis model proposed in this paper is more superior than the baselines.

HIV-associated neurocognitive disorder (HAND) is an array of neurocognitive changes associated with HIV infection, and the roles of microRNAs in HAND are not completely revealed yet. Based on published data and publicly available databases, we constructed an integrated miRNA-mRNA network involved in HAND. Bioinformatics analyses, including gene ontology, network analysis, and KEGG pathway analysis, were applied for further study of the network and the genes of the network. The axon guidance KEGG pathway, three genes NTNG1, EFNB2, CXCL12, and 17 miRNAs which regulates them, are spotlighted in our study. This study provides new perspectives to the knowledge of miRNAs’ roles in the process of HAND, and our findings provided potential therapeutic targets and clues of HAND.

Major depressive disorder (MDD) is one of the most prevalent and disabling mental disorders worldwide. Among the symptoms of MDD, sleep disturbance such as insomnia is prominent and the first reason patients may seek professional help. However, the underlying pathophysiology of this comorbidity is still elusive. Recently, genome-wide association studies (GWAS) have begun to unveil the genetic background of several psychiatric disorders, including MDD and insomnia. Identifying the shared genomic risk loci between comorbid psychiatric disorders could be a valuable strategy to understand their comorbidity. This study seeks to identify the shared genes and biological pathways between MDD and insomnia based on their shared genetic variants. First, we performed a meta-analysis based on the GWAS summary statistics of MDD and insomnia obtained from Psychiatric Genomics Consortium and UK Biobank, respectively. Next, we associated shared genetic variants to genes using two gene mapping strategies: (a) positional mapping based on genomic proximity and (b) expression quantitative trait loci (eQTL) mapping based on gene expression linkage across multiple tissues. As a result, a total of 719 shared genes were identified. Over half (51%) of them are protein-coding genes. Functional enrichment analysis shows that the most enriched biological pathways are related to epigenetic modification, sensory perception, and immunologic signatures. We also identified druggable targets using a network approach. Together these results may provide insights into understanding the genetic predisposition and underlying biological pathways of comorbid MDD and insomnia symptoms.

This research describes numerical methods to analyze the absolute transport demand of cyclists and then to quantify the road network weaknesses of a city with the aim to identify infrastructure improvements in favor of cyclists. The methods are based on a combination of bicycle counts and map-matched GPS traces and are demonstrated with the city of Bologna, Italy: the dataset is based on approximately 27,500 GPS traces from cyclists, recorded over a period of one month on a volunteer basis using a smartphone application. A first method estimates absolute, city-wide bicycle flows, by scaling map-matched bicycle flows of the entire network to manual and instrumental bicycle counts of the main bikeways of the city. As there is a good correlation between the two sources of flow data, the absolute bike-flows on the entire network have been correctly estimated. A second method describes a novel link-deviation index, which quantifies for each network edge the total deviation generated for cyclists in terms of extra distances traveled with respect to the shortest possible route. The deviations are accepted by cyclists either to avoid unpleasant road attributes along the shortest route or to experience more favorable road attributes along the chosen route. The link deviation index indicates the planner which road links are contributing most to the total deviation of all cyclists – in this way, repelling and attracting road attributes for cyclists can be identified. This is why the deviation index is of practical help to prioritize bike infrastructure construction on individual road network links.

Panax notoginseng, as traditional Chinese medicine, has a long history of high clinical value, such as anti-inflammatory, anti-oxidation, inhibition of platelet aggregation, regulation of blood glucose and blood pressure, inhibition of neuronal apoptosis and neuronal protection, and its main ingredients are Panax notoginseng saponins (PNS). Currently, Panax notoginseng may improve mental function, have anti-insomnia and anti-depression effects, alleviate anxiety, and decrease neural network excitation. However, the underlying effects and the mechanisms of Panax notoginseng and its containing chemical constituents (PNS) on these depression-related or anxiety-related diseases has not been completely established. This review summarized the antidepressant or anxiolytic effects and mechanisms of PNS, and analyzed network targets of antidepressant or anxiolytic actions with network pharmacology tools to provide directions and references for further pharmacological studies and new ideas for clinical treatment of nervous system diseases and drug studies and development.

Background: At present, the treatments for patients with advanced lung cancer focus on chemotherapy, targeted therapy, immunotherapy, or a combination of multiple treatments. Purpose: The main purpose of this study is to compare the various chemotherapy-based combination therapies and find the best one for patients with advanced lung cancer. Methods: Based on database (PubMed, EMBASE and Medline) for randomized controlled trials of advanced lung cancer with combination therapy from 2008 to 2020, we searched literatures with overall survival (OS), progression-free survival (PFS), objective response rate (ORR) and adverse as outcome indicators and established a Bayesian mesh meta-analysis for multiple treatment strategies. Then, we combined the results of four outcome indicators to find out the best chemotherapy-based combination therapy strategy for patients with advanced lung cancer, further, we tried to screen out the best drugs of which were commonly used now. Results: It contained a total of 51 studies, including five combination therapies: Chemotherapy/Chemotherapy plus placebo (CT), chemotherapy plus one targeted therapy drug (CT+T), chemotherapy plus two targeted therapy drugs (CT+T+T), chemotherapy combined with immunotherapy (CT+I) or chemotherapy combined with biotherapy (CT+B). In terms of four outcome indicators, CT+I showed the best therapeutic benefits. In the comparison of immunotherapy drugs, pembrolizumab showed the best effect. Conclusion: Our results showed that, among the multiple chemotherapy-based combination therapy strategies, chemotherapy combined with immunotherapy is the best choice for patients with advanced lung cancer, and pembrolizumab combined with chemotherapy has the best effect.

The dynamics of suspended sediment involves inherent non-linearity and complexity as a result of the presence of both spatial variability of the basin characteristics and temporal climatic patterns. As a result of this complexity, the conventional sediment rating curve (SRC) and other empirical methods produce inaccurate predictions. Deep neural networks (DNNs) have emerged as one of the advanced modeling techniques capable of addressing inherent non-linearity in hydrological processes over the last few decades. DNN algorithms are used to perform predictive analysis and investigate the interdependencies among the most pivotal water quantity and quality parameters i.e., discharge, suspended sediment concentration (SSC), and turbidity. In this study, the Long short-term memory (LSTM) algorithm of DNNs is used to model the discharge-suspended sediment relationship for the Stony Clove Creek. The simulations were run using primary data on discharge, SSC and turbidity. For the development of the DNN models and examining the effects of input vectors, combinations of different input vectors (namely discharge, and SSC) for the current and previous days are considered. Furthermore, a suitable modelling approach with an appropriate model input structure is suggested based on model performance indices for the training and testing phases. The performance of developed models is assessed using statistical indices such as root mean square error (RMSE), mean absolute error (MAE), and coefficient of determination (R2). Statistically, the performance of DNN-based models in simulating the daily SSC performed well with observed sediment concentration series data. The study demonstrates the suitability of the DNN approach for simulation and estimation of daily SSC, opening up new research avenues for applying hybrid soft computing models in hydrology.

This study aims to understand the global environment of COVID-19 management and guide future policy directions after the pandemic crisis. To this end, we analyzed a series of the World Economic Forum’s COVID-19 response reports through text mining and network analysis. These reports, written by experts in diverse fields, discuss multidimensional changes in socioeconomic situations, various problems created by those changes, and strategies to respond to national crises. Based on 3,897 refined words drawn from a morphological analysis of 26 reports (as of the end of 2020), this study analyzes the frequency of words, the relationships among words, the importance of specific documents, and the connection centrality through text mining. In addition, network analysis helps develop strategies for sustainable response to and management of national crises through identifying clusters of words with a similar structural equivalence.

The interaction of human immunodeficiency virus with human cells is responsible for all stages of the viral life cycle, from the infection of CD4+ cells to reverse transcription, integration, and the assembly of new viral particles. To date, a large amount of OMICs data as well as information from functional genomics screenings regarding the HIV-1-host interaction has been accumulated in the literature and in public databases. We processed databases containing HIV-host interactions and found 2910 HIV-1-human protein-protein interactions, mostly related to viral group M subtype B, 137 interactions between human and HIV-1 coding and non-coding RNAs, essential for viral lifecycle and cell defense mechanisms, 232 transcriptomics, 27 proteomics, and 34 epigenomics HIV-related experiments. Numerous studies regarding network-based analysis of corresponding OMICs data have been published in recent years. We overview various types of molecular networks, which can be created using OMICs data, including HIV-human protein-protein interaction networks, co-expression networks, gene regulatory and signaling networks, and approaches for the analysis of their topology and dynamics. The network-based analysis can be used to determine the critical pathways and key proteins involved in the HIV life cycle, cellular and immune responses to infection, viral escape from host defense mechanisms, and mechanisms mediating different susceptibility of humans to infection. The proteins and pathways identified in these studies may represent a basis for developing new anti-HIV therapeutic strategies such as new small-molecule drugs preventing infection of CD4+ cells and viral replication, effective vaccines, "shock and kill" and "block and lock" approaches to cure latent infection.

The economy is a complex system, and the interactions between different agents are still not easy to quickly see-through. This complexity should reflect in a spatial dimension; in this way, tracking the tradeoffs opens a new window to the nexus of place and flow. Due to the fact, the economic systems often go through transitions and end up in another state, and this evolution is embedded in cities as the new motor of paradigm shift. To adequately represent and study these dynamics, we aim to develop an integrated method based on network analysis science and geographic economy synthesis to detect a multiscale navigator to track the transition from regional to the local level. This paper seeks to explore the specialization of regional clusters and their innovative behaviour in a particular lagging region, hence unfolding the innovation ecosystem to the smallest granularity then simulating the emergence phase of this complex system. First, our findings reveal that the local scale is relevant to start a bottom-up planning approach on policy implementation. Second, the global challenges could be addressed on a regional scale if we investigate the local complexity to unfold the innovation flow over its complex ecosystem and lead the knowledge as a critical element for inclusive transition, most probably into cities. Finally, the innovation network is an existing fact which can translate as a host for prosperity; In this line of reasoning, we intend to spatialize the track of the innovation flow to achieve transition hotspots and respond adequately to upcoming world concerns.

Electric energy has become essential nowadays not only for the daily life of each of us but also for the economy of different countries. The dissemination of geographic information plays an important role in national development as it facilitates communication between managers, investors, and consumers in this sector. Since the management of electricity network data was previously done in Tunisia based on paper maps and plans, the purpose of this article is to present a case of planning based on GIS, Web, and 3D Web GIS, which would have significant positive consequences on this sector from a technical and financial sides with an improvement in customer satisfaction and the creation of an intelligent electricity network which will be a real decision-making tool. This work draws up an inventory of the network MV (Medium Voltage)/LV (Low Voltage) of the region of Medjez El Bab which routes electricity to the big centers of consumption with access to MV/LV subscribers. The analysis of the network's impedance allowed carrying out different scenarios to optimize performance and obtain more realistic routes. Many thematic maps were produced as part of this project (Slope map, Land use map, map of the MV voltage domains, map of the MV/LV transformer stations power, etc.). A three-dimensional virtual city has been developed to visualize the graphical and attribute data for the study area. A Web and 3D Web GIS applications that allows the publication of the interactive maps on the Web as well as the database information have been developed to offer users the possibility of consulting the produced products by internet. Finally, a website related to the study was developed.

The recent growth of high-resolution spatial data, especially in developing urban environments, is enabling new approaches to civic activism, urban planning and the provision of services necessary for sustainable development. A special area of great potential and urgent need deals with urban expansion through informal settlements (slums). These neighborhoods are too often characterized by a lack of connections, both physical and socioeconomic, with detrimental effects to residents and their cities. Here, we show how a scalable computational approach based on the topological properties of digital maps can identify local infrastructural deficits and propose context-appropriate minimal solutions. We analyze 1 terabyte of OpenStreetMap (OSM) crowdsourced data to create worldwide indices of street block accessibility and local cadastral maps and propose infrastructure extensions with a focus on 120 Low and Middle Income Countries (LMIC) in the Global South. We illustrate how the lack of physical accessibility can be identified in detail, how the complexity and costs of solutions can be assessed and how detailed spatial proposals are generated. We discuss how these diagnostics and solutions provide a multiscalar set of new capabilities – from individual neighborhoods to global regions – that can coordinate local community knowledge with political agency, technical capability, and further research.

Timely detection of surface damages on wind turbine blades is imperative for minimising downtime and avoiding possible catastrophic structural failures. With recent advances in drone technology, a large number of high-resolution images of wind turbines are routinely acquired and subsequently analysed by experts to identify imminent damages. Automated analysis of these inspection images with the help of machine learning algorithms can reduce the inspection cost, thereby reducing the overall maintenance cost arising from the manual labour involved. In this work, we develop a deep learning based automated damage suggestion system for subsequent analysis of drone inspection images. Experimental results demonstrate that the proposed approach could achieve almost human level precision in terms of suggested damage location and types on wind turbine blades. We further demonstrate that for relatively small training sets advanced data augmentation during deep learning training can better generalise the trained model providing a significant gain in precision.

Studies on human mobility have a long history with increasingly strong connections to multi-disciplines across social science, environmental science, information and technology, computer science, engineering, and health science. However, what is lacking in the current research is a summary of studies on human mobility to identify the evolutional pathway and future research directions. To address this gap, we conduct a systematic review of human mobility-related studies published from 1990 to 2020. Drawing on the selected publications retrieved from the Web of Science, we conduct a bibliometric analysis and network visualisation by CiteSpace and VOSviewer on publication years and numbers, authors and their countries and afflictions, citations, topics, abstracts, keyword, and journals. Our findings show that human mobility-related studies have become increasingly interdisciplinary and multi-dimensional, enhanced by the involvement of multi-source big data, the development of technologies, the innovation of modelling approaches, and the novel applications in various areas. We also summarise four future research directions proposed by top cited authors and mobility studies, in terms of data sources, modelling methods, applications, and technologies. We advocate in-depth research on human mobility to address real-world problems and contribute to social good as promising future orientations through integrating multi-source big data and advanced modelling methods facilitated by artificial intelligence, and machine and deep learning.

This paper outlines a tool developed with the purpose of creating a simple configurable emulated network environment that can be used in cyber defence exercises. Research has been conducted into the various related subject areas: cyber defence exercises, network threats, network emulation, network traffic replay, network topologies, and common network services. From this research a requirements specification was produced to encapsulate the features required to create this tool. A network, containing many of the aspects researched, was designed and implemented using Netkit-NG to act as a blueprint for the tool and to further knowledge in the construction of an emulated network. Following this the tool was developed and tested to ensure requirements were met.

In the recent decade, Building Information Modelling (BIM) has widely been adopted in the Architecture, Engineering and Construction (AEC) industry and completely upended the way we build. While BIM continues gain momentum in the industry, it has also attracted increasing attentions from researchers. However, most of the current study focuses on reviewing BIM for management, BIM for green building, BIM for infrastructure and BIM for Facilities Management (FM). There are few studies about Global BIM review and to discuss their complex inter-connections. In this study, we adopted a scientometric analysis method to review global BIM research from 2004-2019. A total of 1455 scholarly bibliographic records obtained from Web of Science Core Collection databased were established for the analysis. This study has identified the top productive and influential researchers, research institutes, regions/countries, subject categories and journals in the BIM field. In addition, 11 clusters of Global BIM research were also identified including construction project, green BIM, construction safety planning, automated IFC-based workflow and so on. Authors distinguished 11 clusters of global BIM research into 3 stages, namely formulating stage, accelerating stage and transforming stage. Furthermore, authors reviewed the BIM policy of Singapore and observed there is a co-production relationship between evolution of BIM policy and global BIM research. These findings provide valuable information for researchers, practitioners and policy makers by visualizing the current progress in the research field of BIM and highlighting future research needs.

Cold chain logistics of Agricultural Products demand forecasting can provide the scientific basis for the country to formulate logistics strategy, which further promotes the development of social economy and the improvement of living standards in China. In this paper, a new mathematical combined model is proposed to Agricultural Products Demand. Shandong, one of a China’s province, serves as the main producer and distributor of agricultural products. Based on the index system created from multiple related factors influencing cold chain logistics demand of agricultural products in Shandong, this paper employs principal component analysis to reduce the dimension of various indexes and predicts principal components with time series. Thereafter, multiple linear regression model and neural network model were constructed to forecast the cold chain logistics demand of agricultural products in Shandong, and their combined forecast models were compared. What's more, the paper provides insight for reference and decision-making concerning the development of cold chain logistics industry of agricultural products in Shandong province.

Background: Three drug-combinations, ipilimumab-nivolumab (Ipi-Nivo), pembrolizumab-axitinib (Pembro-Axi) and avelumab-axitinib (Ave-Axi), have received regulatory approvals in USA and Europe for the treatment of metastatic renal cell carcinoma with clear cell component (mRCC). However, no head-to-head comparison data are available to identify the best option. Therefore, we aimed to compare these new treatments in the first-line setting. Methods: We conducted a systematic search in Pubmed, the Cochrane library and clinicaltri-al.gov website from January 2015 to October 2019, for any randomized controlled trials of treatment-naïve patients with mRCC. The process was performed according to PRISMA guide-lines. We performed a Bayesian network meta-analysis with two different approaches. The out-comes for analysis were overall survival, progression-free survival, and objective response rate. Results: Our search identified 3 published phase 3 randomized clinical trials (2835 patients). In the contrast-based model, Ave-Axi (SUCRA: 83%) and Pembro-Axi (SUCRA: 80%) exhibited the best ranking probabilities for PFS. For OS, Pembro-Axi (SUCRA: 96%) was the most pref-erable option against Ave-Axi and Ipi-Nivo. Objective response rate analysis showed Ave-Axi as the best (SUCRA= 94%) and Pembro-Axi as second best option. In the parametric models, risk of progression was comparable for Ave-Axi and Ipi-Nivo, whereas Pembro-Axi exhibited a lower risk during the first 6 months of treatment and a higher risk afterward. Furthermore, Pembro-Axi exhibited a net advantage in terms of OS over the two other regimens, while Ave-Axi was the least preferable option. Conclusions: Overall evidences suggested pembrolizumab plus axitinib may be the best option.

The power converter is the significant device in a wind power system. Wind turbine will be shut down and off grid immediately with the occurrence of the IGBT module open-circuit fault of power converter, which will seriously impact the stability of grid and even threaten personal safety. However, in the existing diagnosis strategies of power converter, there are few single and double IGBT modules open-circuit fault diagnosis methods producing negative results including erroneous judgment, omissive judgment and low accuracy. In this paper, a novel method to diagnose the single and double IGBT modules open-circuit faults of the permanent magnet synchronous generator (PMSG) wind turbine grid-side converter (GSC) is proposed. Above all, collecting the three-phase current varying with wind speed of 22 failure states including a normal state of PMSG wind turbine GSC as the original signal data. Afterward, the original signal data are decomposed by using variational mode decomposition (VMD) to obtain the mode coefficient series, which are analyzed by the proposed method base on fault trend feature for extracting the trend feature vectors. Finally, the trend feature vectors are used as the input of deep belief network (DBN) for decision-making and obtaining the classification results. The simulation and experimental results show that the proposed method can diagnose the single and double IGBT modules open-circuit faults of GSC, and the accuracy is higher than the benchmark models.

A digital text abstract presents the essential information of an article, and we can find the trend and value of the research by analyzing it rigorously and digging up knowledge. Therefore, this study focuses on the abstracts of index journals in China and Taiwan from July 2010 to June 2020 (a total of 3,283 abstracts). Through the concepts of text mining and natural language processing (NLP), it constructs processes such as text retrieval, text segmentation and word cloud analysis, TF-IDF weight analysis, co-word analysis, network analysis, and trend analysis, and analyses a large amount of text data. The results show that the scope of research in China covers the fields of social sports and sports science, and research in Taiwan covers both natural and social sciences. The network diagram highlights the richness of sports-related research fields in the two regions, but research on sports philosophy is relatively rare. It is suggested that all disci-plines/departments should re-allocate the same resources, so as to show a balanced development trend and help expand a new chapter in the sports academic field.

Reliability assessment in traditional power distribution systems has played a key role in power system planning, design, and operation. Recently, new information and communication technologies have been introduced in power systems automation and asset management, making the distribution network even more complex. In order to achieve efficient energy management, the distribution grid has to adopt a new configuration and operational conditions that are changing the paradigm of the actual electrical system. Therefore, the emergence of the cyber-physical systems concept to face future energetic needs requires alternative approaches for evaluating the reliability of modern distribution systems, especially in the smart grids environment. In this paper, a reliability approach that makes use of failure modes of power and cyber network main components is proposed to evaluate risk analysis in smart electrical distribution systems. We introduce the application of Failure Modes and Effects Analysis (FMEA) method in future smart grid systems in order to establish the impact of different failure modes on their performance. A smart grid test system is defined and failure modes and their effects for both power and the cyber components are presented. Preventive maintenance tasks are proposed and systematized to minimize the impact of high-risk failures and increase reliability.

The diffusion of molecules in aqueous solutions in the domain of membrane technology is very critical in the efficiency of chemical engineering and purification processes. In this study, the diffusion in high and low concentration regions is simulated with finite difference method (FDM), and then the results of numerical computations are coupled with adaptive network-based fuzzy inference system (ANFIS) and bilayered neural network method (BNNM). Machine learning approach can individually predict diffusion phenomena across the domain based on understanding of the machine instead of the discretization of an ordinary differential equation (ODE). The findings of the machine learning method are in good agreement with those of FDM at different times of the simulation. In addition to numerical computation, the error of the system is computed for different iterations. The results show that by increasing the number of iterations and training datasets, all errors reduce significantly for both training and testing. BNN method is also used to train the prediction process of diffusion for a more accurate comparison. This technique is similar to ANFIS method in terms of prediction capability. According to the findings, ANFIS approach predicts diffusion slightly better than BNN method. In this regard, ANFIS technique produces R>0.99 while BNN method produces R around 0.98. Both machine learning methods are accurate enough to predict diffusion throughout the domain for different time steps. The computational time for both algorithms is less than that of FDM method to predict low and high concentrations in the domain. Besides, based on the results, artificial intelligence (AI) can find the relationship between inputs and outputs and determine which input has the main influence on the output in this study to optimize the process. As such, future studies can be focused on AI and other methods for faster prediction and optimization processes.

Delay Tolerant Networks (DTNs) are intermittently connected networks, where there is no guaranteed end-to-end connectivity between the source and destination. The link between the pair of nodes in the DTNs environments is frequently disrupted, due to the fast mobility of nodes, dissemination nature, and power outages. Due to the absence of contemporaneous paths between the nodes, the opportunities for message forwarding in DTNs usually are limited. To obtain high data delivery, the DTNs use innovation of the Store-Carry and Forward (SCF) technique which allows data transmission to successfully proceed despite the absence of continuous end-to-end paths. However, the SCF approach arises various issues such as buffer congestion and message drop which are caused due to growing number of carried messages in restricted network resources. Therefore, buffer management techniques are required to manage the buffer capacity of the nodes by deciding how to effectively drop the messages and how to schedule the messages in the node’s buffer in a perfect way. This paper evaluates the performance of six buffer management techniques, namely First-In-FirstOut, Last In First Out, Drop Largest, Drop Youngest, Evict Shortest Lifetime First and Evict Most Forwarded First, with MaxProp and Spray and Wait routing protocols under variable message’s Time-To-Live values (60 to 300 minutes with step-change 60 minutes). In addition, this study uses an Opportunistic Network Environment (ONE) simulator that is utilized for evaluating the performance of the dropping policies techniques, where it is considering five performance metrics (delivery ratio, overhead ratio, average latency, hop count, and message drop). The evaluation results of each buffer management policy are explained by these metrics briefly.

The article presents the Base Point Split (BPSplit) algorithm for generating a polygon skeleton based on sets of vector data describing lakes and rivers. A key feature of the BPSplit algorithm is that it is dependent on base points representing the source or mouth of a river or a stream. The input values of base points determine the shape of the resulting skeleton. Various skeletons can be generated with the use of different base points. Base points are applied to divide polygon boundaries into segments. Segmentation supports the selection of TIN edges inside polygons. The midpoints of selected TIN edges constitute a basis for generating a skeleton. The algorithm handles polygons with numerous holes, and it accounts for all holes. This article proposes a method for modifying a complex skeleton with numerous holes. In the discussed approach, skeleton edges that do not meet the preset criteria (e.g. that the skeleton is to be located between holes in the center of the polygon), are automatically removed. A simple algorithm for smoothing zigzag lines was proposed.

It is important to reduce the computation complexity while maintaining the accuracy of convolution neural networks. We deem it is possible to further reduce the network complexity while ensuring the accuracy. In this paper, we propose a novel feature extraction network called DSRNet which is lightweight but effective. DSRNet follows the basic ideas of stacking modules and short connection, introduces Depthwise Separable convolution and utilizes the Dilated convolution. The proposed network has fewer parameters and achieves outstanding speed. We conducted comprehensive experiments on CIFAR10, CIFAR100 and STL10 datasets, and the results showed the DSRNet has great performance improvement in terms of accuracy and speed.

Network Simulators is typically used to study services and applications in complex scenarios due to the infeasibility of deploying real testbeds. Many problems can be solved by using network simulators such as NS-3. With this in mind, the aim of this article is to introduce new NS-3 users through detailed information. It is sometimes difficult to handle by new users the traditional manuals developed by NS-3 project official website. In this article, NS-3 for communication network and Eclipse Integrated Development Environment (IDE) for powerful programming language are integrated step-by-step, explaining the main features of these open source software packages and concluding with an example simulation. Our effort is to make it easy for a beginner to be part of the NS-3 research community and to maintain an open environment of knowledge.

Network Embedding (NE) is an important method to learn the representations of network via a low-dimensional space. Conventional NE models focus on capturing the structure information and semantic information of vertices while neglecting such information for edges. In this work, we propose a novel NE model named BimoNet to capture both the structure and semantic information of edges. BimoNet is composed of two parts, i.e., the bi-mode embedding part and the deep neural network part. For bi-mode embedding part, the first mode named add-mode is used to express the entity-shared features of edges and the second mode named subtract-mode is employed to represent the entity-specific features of edges. These features actually reflect the semantic information. For deep neural network part, we firstly regard the edges in a network as nodes, and the vertices as links, which will not change the overall structure of the whole network. Then we take the nodes' adjacent matrix as the input of the deep neural network as it can obtain similar representations for nodes with similar structure. Afterwards, by jointly optimizing the objective function of these two parts, BimoNet could preserve both the semantic and structure information of edges. In experiments, we evaluate BimoNet on three real-world datasets and task of relation extraction, and BimoNet is demonstrated to outperform state-of-the-art baseline models consistently and significantly.

This paper addresses the alliance route network design problem considering uncertainty of unit transportation cost. An alliance route network is constructed based on the hub-and-spoke (HS) network , in which airlines can achieve inter-area passenger transport through their international gateways. The design problem is formulated with a robust model containing a set of uncertain cost parameters. The model is established based on the three-subscript model of the HS network. A case study collected from real-world data is used to test the proposed model. The results show that the robust solution can reduce the impact of cost uncertainty.

The analysis of the human movement patterns based on the mobile network data makes it possible to examine a very large population cost-effectively, and led to several discoveries about human dynamics. However, the application of this data source is still not common practice. The goal of this study was to analyze the commuting tendencies of the Budapest Metropolitan Area using mobile network data and propose an automatized alternative to the current, questionnaire-based method. Commuting is predominantly analyzed by the census, but that is performed only once in a decade in Hungary. To analyze commuting, the home and the work locations of the subscribers are determined based on their appearances during and outside the working hours. The home locations were compared to census data at a settlement level. Then, the settlement and district level commuting tendencies were identified and compared to the findings of census-based sociological studies. It has been found that commuting analysis based on mobile network data strongly correlates with the census-based findings, even though home and work locations have been estimated by statistical methods. All the examined aspects, including commuting from sectors of the agglomeration to the districts of Budapest and demographic distribution of the commuters, show that mobile network data can be an automatized, fast, cost-effective, and relatively accurate way of commuting analysis, that could provide a powerful tool to the sociologists interested in commuting.

In recent years, distributed generation technology has developed rapidly. Renewable energy, represented by wind energy and solar energy, has been widely studied and utilized. In order to give full play to the advantages of Distributed Generation (DG) and meet the challenges after power grid access, Active Distribution Network (ADN) is considered as the future development direction of traditional distribution network because of its ability of active management. Nowadays, multi-scenario analysis is widely used in the research of optimal allocation of distributed power supply in active distribution network. Aiming at the problems that may arise when using multi-scenario analysis to plan DG with uncertainties in large-scale scenarios, a scenario reduction method based on improved clustering algorithm is proposed. The validity of the scene reduction method is tested, and the feasibility of the method is verified. At present, there are few studies on the optimal allocation of DG in ADN under fault state. In this paper, comprehensive safety indicators are introduced. Considering the timing characteristics of DG and the influence of active management mode, a bi-level programming model is established, which aims at minimizing the investment of annual life cycle and the removal of active power. The bi-level model is a complex mixed integer non-linear programming model. A hybrid algorithm combining cuckoo search algorithm and primal dual interior point method is used to solve the model. Finally, through the simulation of the IEEE-33 node system, the superiority of the scenario reduction method and the comprehensive security index used in this paper to optimize the configuration of DG in ADN is verified.

One of the most common and important destructive attacks on the victim system is Advanced Persistent Threats (APT)-attack. The APT attacker can achieve his hostile goals by obtaining information and gaining financial benefits regarding the infrastructure of a network. One of the solutions to detect a secret APT attack is using network traffic. Due to the nature of the APT attack in terms of being on the network for a long time and the fact that the network may crash because of high traffic, it is difficult to detect this type of attack. Hence, in this study, machine learning methods such as C5.0 decision tree, Bayesian network and deep neural network are used for timely detection and classification of APT-attacks on the NSL-KDD data set. Moreover, 10-fold cross validation method is used to experiment these models. As a result, the accuracy (ACC) of the C5.0 decision tree, Bayesian network and 6-layer deep learning models is obtained as 95.64%, 88.37% and 98.85%, respectively, and also, in terms of the important criterion of the false positive rate (FPR), the FPR value for the C5.0 decision tree, Bayesian network and 6-layer deep learning models is obtained as 2.56, 10.47 and 1.13, respectively. Other criterions such as sensitivity, specificity, accuracy, false negative rate and F-measure are also investigated for the models, and the experimental results show that the deep learning model with automatic multi-layered extraction of features has the best performance for timely detection of an APT-attack comparing to other classification models.

The study concentrates on researching possibilities of using computer image analysis and neural modeling in order to assess selected quality discriminants of spray-dried chokeberry powder. The aim of the paper is quality identification of chokeberry powders on account of their highest dying power, the highest bioactivity as well as technologically satisfying looseness of powder. The article presents neural models with vision technique backed up by devices such as digital camera as well as electron microscope. Reduction in size of input variables with PCA has influence on improving the processes of learning data sets, thus increasing effectiveness of identifying chokeberry fruit powders included in digital pictures, which is shown in the results of the conducted research. The effectiveness of image recognition are presented by classifying abilities as well as low Root Mean Square Error (RMSE), for which the best results are achieved with typology of network type Multi-Layer Perceptron (MLP). The selected networks type MLP are characterized by the highest degree of classification at 0.99 and RMSE at 0.11 at most at the same time.

This paper incorporates the definition of Intrusion Detection Systems and the methodologies utilised by these systems. As well as this, this research paper also encompasses a taxonomy and a survey of IDS and the specific strategies and principles. Finally, this paper also includes a discussion amongst other authors for instance what the authors differ and agree on, along with the previously related studies.

Call set up success rate (CSSR) in a mobile network is an important quality parameter, which directly influences overall key performance indicators (KPIs) of the network service providers. Network KPIs especially the CSSR is the fraction of the attempts to make a call that result in a successful connection to the dialled number. Nevertheless, all call attempts do not end with a connection to the dialled number. In this research, six sigma methodology is applied to improve the call quality of a legacy mobile network and subsequently to boost comprehensive CSSR of a telecom service provider. This research elucidates an empirical study of improving overall CSSR by employing DMAIC methodology consisting of five stages, e.g. Define, Measure, Analysis, Improve and Control. In addition, analytic hierarchy process (AHP) technique is used for determining the vital causes out of all the identified network parameters affecting overall CSSR. Furthermore, the identified vital parameters are being upgraded in order to improve the overall CSSR and finally the system achieved a higher CSSR.

Model understanding is critical in many domains, particularly those involved in high-stakes decisions, i.e., medicine, criminal justice, and autonomous driving. Explainable AI (XAI) methods are essential for working with black-box models such as Convolutional Neural Networks. This paper evaluates the traffic sign classifier of Deep Neural Network (DNN) from the Programmable Systems for Intelligence in Automobiles (PRYSTINE) project for explainability. The results of explanations were further used for the CNN PRYSTINE classifier vague kernels` compression. After all, the precision of the classifier was evaluated in different pruning scenarios. The proposed classifier performance methodology was realised by creating the original traffic sign and traffic light classification and explanation code. First, the status of the kernels of the network was evaluated for explainability. For this task, the post-hoc, local, meaningful perturbation-based forward explainable method was integrated into the model to evaluate each kernel status of the network. This method enabled distinguishing high and low-impact kernels in the CNN. Second, the vague kernels of the classifier of the last layer before the fully connected layer were excluded by withdrawing them from the network. Third, the network's precision was evaluated in different kernel compression levels. It is shown that by using the XAI approach for network kernel compression, the pruning of 5% of kernels leads only to a 1% loss in traffic sign and traffic light classification precision. The proposed methodology is crucial where execution time and processing capacity prevail.

This study aims to develop a hybrid approach based on backpropagation Artificial Neural Network (ANN) and spatial analysis techniques to predict particulate matter of size 2.5 µm (PM2.5) from vehicle exhaust emissions in the State of California using Aerosol Optical Depth (AOD) and several climatic indicators (relative humidity, temperature, precipitation, and wind speed). The PM2.5 data were generated using Motor Vehicle Emission Simulator (MOVES), the measured climatic variables and AOD were obtained from the California Irrigation Management Information System (CIMIS), and NASA’s Moderate Resolution Spectroradiometer (MODIS). The data were resampled to a seasonal format and downscaled over grids of 10 by 10 to 150 by 150, and precipitation was determined to be the most important independent variable. Coefficient of determination ( ), Mean Absolute Percentage Error (MAPE), and Root Mean Square Error (RMSE) were used to assess the quality of the ANN prediction model. The model peaked at winter seasons with = 0.984, RMSE = 0.027, and MAPE = 25.311, whereas it had the lowest performance in summer with = 0.920, RMSE = 0.057, and MAPE = 65.214. These results indicate that the ANN model can accurately predict the PM2.5 concentration and can be used to forecast future trends.

Enabling D2D communication in the mm-Wave band has many obstacles which must be mitigated. The primary concern is the introduction of interference from various sources. Thus, we focused our work on the performance of decode and forward (DF) relay assisted D2D communication in the mm-Wave band for increasing the coverage probability and energy efficiency (EE). Three modes are proposed for D2D communication to prevail. Bit-wise binary XOR operation is executed at the relay node which increases the security feature. Radius of coverage expression is derived which indicates the switching of the modes. The diffused incoherent scattering power is also considered as a part of power consumption. Furthermore, a unique relay selection scheme, Dynamic relay selection (DRS) method is proposed to select the optimal relay for information exchange. Comparison of the proposed DF relay scheme with amplify and forward (DF) scheme is also shown. Finally, simulation results prove the efficacy of the proposed work.

A phenotype is the composite of an observable expression of a genome for traits in a given environment. The trajectories of phenotypes computed from an image sequence and timing of important events in a plant’s life cycle can be viewed as temporal phenotypes and indicative of the plant’s growth pattern and vigor. In this paper, we introduce a novel method called FlowerPhenoNet which uses deep neural networks for detecting flowers from multiview image sequences for high throughput temporal plant phenotyping analysis. Following flower detection, a set of novel flower-based phenotypes are computed, e.g., the day of emergence of the first flower in a plant’s life cycle, the total number of flowers present in the plant at a given time, the highest number of flowers bloomed in the plant, growth trajectory of a flower and the blooming trajectory of a plant. To develop a new algorithm and facilitate performance evaluation based on experimental analysis, a benchmark dataset is indispensable. Thus, we introduce a benchmark dataset called FlowerPheno which comprises image sequences of three flowering plant species, e.g., sunflower, coleus, and canna, captured by a visible light camera in a high throughput plant phenotyping platform from multiple view angles. The experimental analyses on the FlowerPheno dataset demonstrate the efficacy of the FlowerPhenoNet.

Drug repositioning (also called drug repurposing) is a strategy for identifying new therapeutic targets for existing drugs. This approach is of great importance in pharmacology as it is a faster and cheaper way to develop new medical treatments. In this paper, we present, to our knowledge, the first application of multiplex-heterogeneous network embedding to drug repositioning. Network embedding learns the vector representations of nodes, opening the whole machine learning toolbox for a wide variety of applications including link prediction, node labelling or clustering. So far, the application of network embedding for drug repositioning focused on heterogeneous networks. Our approach for drug repositioning is based on multiplex-heterogeneous network embedding. Such method allows the richness and complexity of multiplex and heterogeneous networks to be projected in the same vector space. In other words, multiplex-heterogeneous networks aggregate different multi-omics data in the same network representation. We validate the approach on a task of link prediction and on a case study for SARS-CoV2 drug repositioning. Experimental results show that our approach is highly robust and effective for finding new drug-target associations.

The heterogeneous structure implies that a few nodes may be crucial in maintaining network structural and functional properties. Identifying these crucial nodes correctly and quickly is a primary issue as contemporarily may face the mushrooming of large-scale datasets. Besides, the ‘weight issue’ is always ignored in this field which edge weight may play a positive/negative role in contributing to the node importance in different weighted networks. This paper provides a novel algorithm, Weighted Expectation Algorithm (WEA), which aims to ensure accuracy and speed of computation by taking advantage of dynamic programming to better handle the task of large-scale networks. Additionally, the weight issue that edge weights may contribute differently is addressed by a simply quantitative definition. Two standard experiments show WEA can maintain the network structure in connectivity well (by the lowest average robustness 0.192) and identify the node importance better in the spreading function test of spreading dynamics (by the highest average Kendall’s tau-b 0.678). In addition, the time complexities of different algo-rithms are evaluated, and their time-consuming are tested, proving that WEA consumes a rela-tively short time.

The electroencephalogram (EEG) is a record of brain activity. Brain Computer Interface (BCI) technology formed by the EEG signal has become one of the hotspots at present. How to extract the feature signal of EEG is the most basic research of BCI technology. In this paper, A new method of recognizing fatigue, conscious, concentrated state of human brain is proposed by the combination of discrete wavelet transform and the neural network based on EEG signal. First of all, the law signal is preprocessed by the wavelet denoising method because the law EEG signal contains a large number of high frequency noise, which is decomposed into multi-layer high frequency signal and low frequency signal. thus, δ wave, θ wave, α wave, β wave are obtained by the wavelet transform. And then, frequency band energy of the different wave is regards as the feature signal of EEG. In the experiment, the feature signal is classified by radial basic function (RBF) and annealed chaotic competitive learning network (ACCLN). RBF and ACCLN networks are trained with 500 sets of sample data and are tested by 100 sets of samples in different mental states. The experimental results show that the average accuracy of RBF network under three conditions are 88.75%, 88.25%, 88.5%, respectively, and the correct rate of ACCLN network is 97%, 98%, 98%, respectively.

Precision medicine emphasizes fine-grained diagnostics, taking individual variability into account to enhance treatment effectiveness. Parkinson's Disease (PD) heterogeneity among individuals is a proof that disease subtypes exist, and assigning individuals to subgroups is necessary for a better understanding of disease mechanisms and designing precise treatment approaches. The purpose of this study was to identify PD subtypes using RNA-Seq data in a combined pipeline including unsupervised machine learning, bioinformatics, and network analysis. 210 post mortem brain RNA-Seq samples from PD (n = 115) and Normal Controls (NC, n = 95) were obtained with a systematic data retrieval following PRISMA statements and a fully data-driven clustering pipeline was performed to identify PD subtypes. Bioinformatics and Network analyses were performed to characterize the disease mechanisms of the identified PD subtypes and to identify target genes for drug repurposing. Two PD clusters were identified and 42 DEGs were found (p.adjusted ≤ 0.01). PD clusters had significantly different gene network structures (p < 0.0001) and phenotype-specific disease mechanisms, highlighting the differential involvement of the Wnt/β-catenin pathway regulating adult neurogenesis. NEUROD1 was identified as a key regulator of gene networks and ISX9 and PD98059 were identified as NEUROD1-interacting compounds with disease-modifying potential, reducing the effects of dopaminergic neurodegeneration. This hybrid data analysis approach could enable precision medicine applications by providing insights for the identification and characterization of pathological subtypes. This workflow has proven useful on PD brain RNA-Seq, but its application to other neurodegenerative diseases is encouraged.

The network pharmacology (NP) approach is a valuable novel methodology for understanding the complex pharmacological mechanisms of medicinal herbs. In addition, various in silico analysis techniques combined with the NP can improve the understanding of various issues in natural product research. This study assessed the therapeutic effects of Arum ternata (AT), Poria cocos (PC), and Zingiber officinale (ZO) on hyperlipidemia after network pharmacologic analysis. A protein–protein interaction (PPI) network of forty-one key targets was analyzed to discover core functional clusters of the herbal compounds. The KEGG pathway and gene ontology (GO) term enrichment analysis identified significant categories of hypolipidemic mechanisms. The STITCH database indicated a high connection with several statin drugs deduced by the similarity in targets. AT, PC, and ZO regulated the genes related to the energy metabolism and lipogenesis in HepG2 cells loaded with free fatty acids (FFAs). Furthermore, a combinational effect of the mixture of three herbs was found. The herbal combination exerted superior efficacy compared to a single herb, particularly in regulating acetyl-CoA carboxylase (ACC) and carnitine palmitoyltransferase 1 (CPT-1). In conclusion, the network pharmacologic approach was used to assess potential targets of the herbal combination for treatment. Experimental data from FFAs-induced HepG2 cells suggested that the combination of AT, PC, and ZO might attenuate hyperlipidemia and its associated hepatic steatosis.

Green innovation has become an important combination of high-quality economic growth and sustainable development of ecological environment. In this paper, the super-efficiency network SBM model is used to measure the two-stage green innovation efficiency of industrial science and technology R&D and achievement transformation in 30 provinces and cities from 2009 to 2019, and exploratory Data Analysis (ESDA) and spatial econometric model are used to investigate the spatial-temporal evolution characteristics and influencing factors of green innovation efficiency. The results show that: firstly, the overall efficiency of industrial green innovation is low, and the efficiency of scientific research and development and achievement transformation has experienced three stages of "upward-declining-revitalized period". The low efficiency of achievement transformation is an important factor hiding the improvement of the efficiency of industrial green innovation. Secondly, The industrial green innovation efficiency gradually increases from northwest to southeast, forming a centralized "line" and "block" distribution. The high efficiency area is still concentrated in the eastern coastal region, and the balanced development trend is obvious in the central and western regions. Finally, openness has a positive impact on the two-stage green innovation efficiency; Industrial structure and government investment in science and technology have a positive impact on the efficiency of science and technology research and development, but have no significant effect on the efficiency of achievement transformation. Enterprise size has a positive effect on achievement transformation efficiency, but has no significant effect on R&D efficiency. Environmental regulation has a positive impact on R&D efficiency and a negative impact on achievement transformation efficiency.

Although neural network architectures are critical for their performance, how the structural characteristics of a neural network affect its performance has still not been fully explored. We here map architectures of neural network to directed acyclic graphs, and find that incoherence, a structural characteristic to measure the order of directed acyclic graphs, is a good indicator for the performance of corresponding neural networks. Therefore we propose a deep isotropic neural network architecture by folding a chain of same blocks then connecting the blocks with skip connections at different distances. Our models, named FoldNet, have two distinguishing features compared with traditional residual neural netowrks. First, the distances between block pairs connected by skip connections increase from always equal to one to specially selected different values, which lead to more incoherent graphs and let the neural network explore larger receptive fields and thus enhance its multi-scale representation ability. Second, the number of direct paths increases from one to multiple, which leads to a larger proportion of shorter paths and thus improve the direct propagation of information throughout the entire network. Image classification results on CIFAR-10 and Tiny ImageNet benchmarks suggested that our new network architecture performs better than traditional residual neural networks.

A convolutional neural network (CNN) is sometimes understood as a black box in the sense that while it can approximate any function, studying its structure will not give us any insights into the nature of the function being approximated. In other terms, the discriminative ability does not reveal much about the latent representation of a network. This research aims to establish a framework for interpreting the CNNs by profiling them in terms of interpretable visual concepts and verifying them by means of Integrated Gradient. We also ask the question, "Do different input classes have a relationship or are they unrelated?" For instance, could there be an overlapping set of highly active neurons to identify different classes? Could there be a set of neurons that are useful for one input class whereas misleading for a different one? Intuition answers these questions positively, implying the existence of a structured set of neurons inclined to a particular class. Knowing this structure has significant values; it provides a principled way for identifying redundancies across the classes. Here the interpretability profiling has been done by evaluating the correspondence between individual hidden neurons and a set of human-understandable visual semantic concepts. We also propose an integrated gradient-based class-specific relevance mapping approach that takes the spatial position of the region of interest in the input image. Our relevance score verifies the interpretability scores in terms of neurons tuned to a particular concept/class. Further, we perform network ablation and measure the performance of the network based on our approach.

Medical Trust-Network is one of the most promising fields of study in network science. Establishment of trust within medical entities ensures better treatment and increases better medical facilities. The word ‘Trust’ signifies a very important behavioral aspect between any human entities, especially among doctors and patients. To represent such relationships Trust Network Models are built to express the interactions between human entities within such networks. Though the idea of a Trust-Network has traditionally been one of the major areas of research, yet the concept of a medical trust network model is relatively a new domain. In this paper, we introduce an overall multilayered Trust Network to represent the entire healthcare architecture. More specifically our model is based on an evolutionary graph system with a discrete relationship between the three most important entities of any healthcare system, namely – Doctors, Departments, and Hospitals. Observations indicate that based on our model, the medical healthcare system is a multilayered model unlike a feed-forward model as indicated by previous studies.

With the fast development of the mobile Internet, the online platforms of social networks have rapidly been developing for the purpose of making friends, sharing information, etc. In these online platforms, users being related to each other forms social networks. Literature reviews have shown that social networks have community structure. Through the studies of community structure, the characteristics and functions of networks structure and the dynamical evolution mechanism of networks can be used for predicting user behaviours and controlling information dissemination. Therefore, this study proposes a deep community detection method which includes (1) matrix reconstruction method, (2) spatial feature extraction method and (3) community detection method. The original adjacency matrix in social network is reconstructed based on the opinion leader and nearer neighbors for obtaining spatial proximity matrix. The spatial eigenvector of reconstructed adjacency matrix can be extracted by an auto-encoder based on convolution neural network for the improvement of modularity. In experiments, four open datasets of practical social networks were selected to evaluate the proposed method, and the experimental results show that the proposed deep community detection method obtained higher modularity than other methods. Therefore, the proposed deep community detection method can effectively detect high quality communities in social networks.

Protein Contact Network (PCN) is an emerging paradigm for modelling protein structure. A common approach to interpreting such data is through network-based analyses. It has been shown that clustering analysis may discover allostery in PCN. Nevertheless Network Embedding has shown good performances in discovering hidden communities and structures in network. In this work, we compare some approaches for graph embedding with respect to some classical clustering approaches for annotating protein structures.

The fundamental question in the field of sensor research is new directions of scientific fields, which play a vital role in the progress of science and technology. This study confronts this question here by developing a bibliometric analysis, which endeavors to explain the evolution of sensor research and new technologies that are critical to science and society. The database of Scopus concerning scientific documents and patents is used for statistical and computational analyses in these topics. Results suggest that emerging technological trajectories in sensors are wireless sensor networks, wearable sensors and biosensors. Main characteristics of these growing research fields and technologies in sensors are described for fruitful implications of research and innovation policy directed to science advances and technological change in society.

Compared with conventional methods of fault diagnosis for power transformers, which have defects such as imperfect encoding and too absolute encoding boundaries, this paper systematically discusses various intelligent approaches applied in fault diagnosis and decision making for large oil-immersed power transformers based on dissolved gas analysis (DGA), including expert system (EPS), artificial neural network (ANN), fuzzy theory, rough sets theory (RST), grey system theory (GST), swarm intelligence (SI) algorithms, data mining technology, machine learning (ML), and other intelligent diagnosis tools, and summarizes existing problems and solutions. From this survey, it is found that a single intelligent approach for fault diagnosis can only reflect operation status of the transformer in one particular aspect, causing various degrees of shortcomings that cannot be resolved effectively. Combined with the current research status in this field, the problems that must be addressed in DGA-based transformer fault diagnosis are identified, and the prospects for future development trends and research directions are outlined. This contribution presents a detailed and systematic survey on various intelligent approaches to faults diagnosing and decisions making of the power transformer, in which their merits and demerits are thoroughly investigated, as well as their improvement schemes and future development trends are proposed. Moreover, this paper concludes that a variety of intelligent algorithms should be combined for mutual complementation to form a hybrid fault diagnosis network, such that avoiding these algorithms falling into a local optimum. Moreover, it is necessary to improve the detection instruments so as to acquire reasonable characteristic gas data samples. The research summary, empirical generalization and analysis of predicament in this paper provide some thoughts and suggestions for the research of complex power grid in the new environment, as well as references and guidance for researchers to choose optimal approach to achieve DGA-based fault diagnosis and decision of the large oil-immersed power transformers in preventive electrical tests.

Scientific social networking sites like Researchgate or Academia.edu have become part of the work practice of academic researchers. These digital platforms have been designed precisely to encourage the exchange of knowledge between scholars and to help the expansion of collaborative networks among them. Even if studies on this topic have multiplied in recent years, there is a dearth of research on the actual impact of these platforms on scientific production. The goal of this study is to investigate the relation between the attitude of researchers towards scientific social networks and the use of knowledge in their scientific work. Data from users of the scientific social networking site Researchgate were collected. A total of 143 valid responses were received and structural equation modeling was applied for data analysis. Findings of this study confirmed that researchers use knowledge obtained from scientific social networking sites both incorporating it within their research products and to acquire new competences. In particular approaching the platform as a scientific community with a shared language and a shared vision was found to have a positive impact on knowledge use. To the best knowledge of the authors this is the first study investigating the actual use of knowledge from scientific social networking sites by academic researchers. Results help to understand the impact of these platforms on the work practice of a strategic sector like scientific research.

Animal-focused research has been crucial for scientific advancement however, in this matter, rodents are still taking a starring role. Coming out from merely being supportive of evidence found in rodents, the use of fish models has slowly taken a more central role and expanded its overall contributions in areas such as social sciences, evolution, physiology, and recently in translational medical research. In neurosciences, zebrafish has been widely adopted, contributing to our understanding of the genetic control of brain processes, and the effects of pharmacological manipulations. However, discussion continues regarding the paradox of function versus structure, when fish and mammals are compared, and on the potentially evolutionarily conserved nature of behaviour across fish species. From the behavioural stand point we explored aversive/stress and social behaviour in selected fish models, and refer to the extensive contributions of stress and monoaminergic systems. We suggest that, in spite of marked neuroanatomical differences between fish and mammals, stress and sociality are conserved at the behavioural and molecular levels. We also suggest that stress and sociality are mediated by monoamines in predictable and non-trivial ways, and that monoamines could “bridge” the relationship between stress and social behaviour. To reconcile the level of divergence with the level of similarity, we need neuroanatomical, pharmacological, behavioural, and ecological studies conducted in the laboratory and in nature. These areas need to add to each other to enhance our understanding of fish behaviour and ultimately how this all may translate to better model systems for translational studies.

The production of lithium-ion battery cells is characterized by a high degree of complexit due to numerous cause-effect relationships between process characteristics. Knowledge about the multi-stage production is spread among several experts, rendering tasks such as failure analysis challenging. In this paper, a method is presented, which includes expert knowledge acquisition in production ramp-up by combining Failure Mode and Effects Analysis (FMEA) with a Bayesian Network. We show the effectiveness of this holistic method by building up a large scale, cross-process Bayesian Failure Network in lithium-ion battery production. Using this model, we are able to conduct root cause analyses as well as analyses of failure propagation. The former support operators in identifying root causes once a cell possesses a specific failure by calculating most-probable explanations matched to the individual battery cell data. The latter enable us to analyze propagation of failures and deviations in the production chain and thus provide support for placement of quality gates, leading to a significant reduction in scrap rate. Moreover, it gives an insight into which process steps are key drivers for which final product characteristics.

An abdominal aortic aneurysm (AAA) is usually asymptomatic until rupture, which is associated with extremely high mortality. Consequently, early detection of AAAs is of paramount importance in reducing mortality; however, most AAAs are detected by medical imaging incidentally. The aim of this study was to investigate the feasibility of machine learning-based pulse wave (PW) analysis for the early detection of AAAs using a database of in silico PWs. PWs in the large systemic arteries were simulated using one-dimensional blood flow modelling. A database of in silico PWs representative of subjects (aged 55, 65 and 75 years) with different AAA sizes was created by varying the AAA-related parameters with major impacts on PWs – identified by parameter sensitivity analysis – in an existing database of in silico PWs representative of subjects without AAA. Then, a machine learning architecture for early detection of AAAs was proposed, which was trained and tested using the new in silico PW database. The parameter sensitivity analysis revealed that the AAA maximum diameter and stiffness of the large systemic arteries were the dominant AAA-related biophysical properties that significantly influence the PW. The simulated PW indexes extracted from the database showed that the PW was not only influenced by the presence of an AAA but was also significantly affected by multiple cardiovascular parameters that compromised the detection of AAAs by using individual PW indexes. Alternatively, the trained machine learning model performed well in classifying normal and AAA conditions using digital photoplethysmogram PWs from the database. These findings suggest that machine learning-based PW analysis is a promising approach for AAA screening using PW signals acquired by wearable devices.

Computer-aided image diagnostics (CAD) have been used in many fields of diagnostic medicine. It relies heavily on classical computer vision and artificial intelligence. Quantum neural network (QNN) has been introduced by many researchers around the world and presented recently by research corporations such as Microsoft, Google, and IBM. In this paper, the investigation of the validity of using the QNN algorithm for machine-based breast cancer detection was performed. To validate the learnability of the QNN, a series of learnability tests were performed alongside with classical convolutional neural network (CCNN). QNN is built using the Cirq library to perform the assimilation of quantum computation on classical computers. Series of investigations were performed to study the learnability characteristics of QNN and CCNN under the same computational conditions. The comparison was performed for real Mammogram data sets. The investigations showed success in terms of recognizing the data and training. Our work shows better performance of QNN in terms of successfully training and producing a valid model for smaller data set compared to CCNN.

Recently, with the rapid advancement of the 4th Industrial Revolution, there has been a continuous outlook that Data (D), Network (N), and Artificial Intelligence (A) should be heavily utilized as resources in light of new value. South Korea is preparing policy training plans the likes of 5G network enhancement, AI manpower training, and data openings, etc., recognizing DNA technology as the key driving force behind the 4th Industrial Revolution and 5G network enhancement, AI manpower training, and data opening, etc. However, there is a criticism that the DNA industry remains in an early stage. Despite policy support within South Korea, the DNA industry has not been revitalized due to various causes, and in particular, not being concentrated on limited resources selectively is also pointed to as an important cause. this study would quantitatively draw the priority of policy measures as well as propose policy implications for the revitalization of the DNA industry by means of the ISM-ANP model. It is judged that South Korea’s experience in this way will be an important lesson for other countries which would politically promote the DNA industry as a new growth engine within the 4th Industrial Revolution environment.

Wireless Sensor Networks (WSNs) is considered to be a promising research area since it entails sensing capabilities. WSNs are confronted by fabricated explosion injection attacks and in return results into draining of vitality on sensor nodes routing mainly because of increased capabilities in a broad range of applications where sensor nodes use a battery as the power source. In this paper, we reveal and claim a state-of-the-art model to minimize vitality depletion of nodes within the network in return increases network period to more realistic stretch. It is revealed that the main cause is vitality consumption unbalances in different parts of the network direct resulting from having a static sink. More still, the network nodes neighboring the sink insistently partake in progressing data of other nodes to the sink. Consequently, the network nodes are supplementarily subjected to untimely vitality exhaustion. This paper mainly provides a novel movable (mobile) fuzzy logic sink approach and an intelligent system like expect systems that are able to scrutinize network situation, and make the superlative choice for spreading the network period robotically.

Optical artificial neural networks (ONNs) — analog computing hardware tailored for machine learning [1,2] — have significant potential for ultra-high computing speed and energy efficiency [3]. We propose a new approach to architectures for ONNs based on integrated Kerr micro-comb sources [4] that is programmable, highly scalable and capable of reaching ultra-high speeds. We experimentally demonstrate the building block of the ONN — a single neuron perceptron — by mapping synapses onto 49 wavelengths of a micro-comb to achieve a high single-unit throughput of 11.9 Giga-FLOPS at 8 bits per FLOP, corresponding to 95.2 Gbps. We test the perceptron on simple standard benchmark datasets — handwritten-digit recognition and cancer-cell detection — achieving over 90% and 85% accuracy, respectively. This performance is a direct result of the record small wavelength spacing (49GHz) for a coherent integrated microcomb source, which results in an unprecedented number of wavelengths for neuromorphic optics. Finally, we propose an approach to scaling the perceptron to a deep learning network using the same single micro-comb device and standard off-the-shelf telecommunications technology, for high-throughput operation involving full matrix multiplication for applications such as real-time massive data processing for unmanned vehicle and aircraft tracking.

With the development of the city, a large number of water networks in the built-up areas of Bangkok have been filled and hardened, resulting in poor urban flooding and aggravating flooding, causing loss of life and property of citizens. In this paper, on the basis of combing the current water networks and open space potential flood storage points in the built-up areas of Bangkok, the complex network diagram of the water system in the built-up areas of Bangkok is constructed by combining the theory of complex networks and analyzing the attribute parameters of the network and the characteristic parameters of the open space storage nodes and water system paths, and finding that the water system network in the built-up area of Bangkok has complex network characteristics such as robustness, clustering and hierarchy. By exploring the key storage points and water system connection paths, the researchers initially constructed a flood safety pattern in the built-up area of Bangkok with 145 key nodes and 127 river paths as the backbone, and conceptualized the development study of the flood safety pattern in both horizontal and vertical directions. The urban flood safety pattern based on complex network theory proposed in this paper provides a case reference and methodological ideas to scientifically solve the game conflict between the demand for construction land for urban development and the construction area of urban open space storage points and water storage network under the increasingly severe flooding situation.

Forest fire identification is important for forest resource protection. Effective monitoring of forest fires requires the deployment of multiple monitors with different viewpoints, while most traditional recognition models can only recognize images from a single source. By ignoring the information from images with different viewpoints, these models produce high rates of missed and false alarms. In this paper, we propose a graph neural network model based on the similarity of dynamic features of multi-view images to improve the accuracy of forest fire recognition. The input features of the nodes on the graph are converted into relational features of different gallery pairs by establishing pairs (nodes) representing different viewpoint images and gallery images. The new feature library relationship is used to update the image gallery with dynamic features in order to achieve the estimation of similarity between images and improve the image recognition rate of the model. In addition, to reduce the complexity of image pre-processing process and extract key features in images effectively, this paper also proposes a dynamic feature extraction method for fire regions based on image segment ability. By setting the threshold value of HSV color space, the fire region is segmented from the image, and the dynamic features of successive frames of the fire region are extracted. The experimental results show that, compared with the baseline method Resnet, this paper's method is more effective in identifying forest fires, and its recognition accuracy is improved by 2%. And the scheme of this paper can adapt to different forest fire scenes, with better generalization ability and anti-interference ability.

Over the past decade, wireless communication technologies have developed significantly for intelligent applications in road transport. This paper provides an overview of telecommunications-based intelligent transport systems with a focus on ensuring system safety and resilience. In vehicle-to-everything, these problems are extremely acute due to the specifics of the operation of transport networks, which requires the use of special protection mechanisms. In this regard, it was decided to use blockchain as a system platform to support the needs of transport systems for secure information exchange. This paper describes the technological aspects of implementing blockchain technology in vehicle-to-network; the features of such technology are presented, as well as the features of their interaction.

Alzheimer’s Disease (AD) is a neurodegenerative condition that currently has no known cure. The principles of the expanding field of network medicine (NM) have recently been applied to AD research. The main principle of NM proposes that diseases are much more complicated than one mutation in one gene, and incorporate different genes, connections between genes, and pathways that may include multiple diseases to create full scale disease networks. AD research findings as a result of the application of NM principles have suggested that functional network connectivity, myelination, myeloid cells, and genes and pathways may play an integral role in AD progression, and may be integral to the search for a cure. Different aspects of the AD pathology could be potential targets for drug therapy to slow down or stop the disease from advancing, but more research is needed to reach definitive conclusions. Additionally, the holistic approaches of network pharmacology in traditional Chinese medicine (TCM) research may be viable options for the AD treatment, and may lead to an effective cure for AD in the future.

Linear state estimation (SE) formulation under a rectangular coordinate system has been proved to be applicable for real-time distribution network management. Micro phasor measurements’ model can be accommodated into this kind of SE easily. However, voltage magnitude, active power and reactive power measurements are transformed to linear measurements with large node voltage error. To cope with this issue, a linear state estimation under a polar coordinate system is adopted at the first stage to obtain accurate enough complex node voltage, and then nonlinear measurements are transformed to be linear with complex node voltage. At the second stage, linear SE under a rectangular coordinate system can be adopted to satisfy more strict network constraints. The proposed two-stage linear SE is validated on balanced 14, 33, 70,84, 119, 135 nodes network and IEEE 13, 34, 37,123 unbalanced test feeders.

Attackers are perpetually modifying their tactics to avoid detection and frequently leverage legitimate credentials with trusted tools already deployed in a network environment, making it difficult for organizations to proactively identify critical security risks. Network traffic analysis products have emerged in response to attackers’ relentless innovation, offering organizations a realistic path forward for combatting creative attackers. Additionally, thanks to the widespread adoption of cloud computing, Device Operators (DevOps) processes, and the Internet of Things (IoT), maintaining effective network visibility has become a highly complex and overwhelming process. What makes network traffic analysis technology particularly meaningful is its ability to combine its core capabilities to deliver malicious intent detection. In this paper, we propose a novel darknet traffic analysis and network management framework to real-time automating the malicious intent detection process, using a weight agnostic neural networks architecture. It is an effective and accurate computational intelligent forensics tool for network traffic analysis, the demystification of malware traffic, and encrypted traffic identification in real-time. Based on Weight Agnostic Neural Networks (WANNs) methodology, we propose an automated searching neural net architectures strategy that can perform various tasks such as identify zero-day attacks. By automating the malicious intent detection process from the darknet, the advanced proposed solution is reducing the skills and effort barrier that prevents many organizations from effectively protecting their most critical assets.

With the development of deep learning technology, various structures and research methods for super-resolution restoration of natural images and document images have been introduced. In particular, a number of recent studies have been conducted and developed in image restoration using generative adversarial network. Super-resolution restoration is ill-posed problem because of some complex restraints such as a lot of high-resolution images being restored for the same low-resolution image and also difficulty in restoring noises like edges, light smudging, and blurring. In this study, we utilized the spatially adaptive de-normalization (SPADE) structure for document image restoration to solve previous problems such as edge unclearness, hardness to catch features of texts, and the image color transition. Consequently, it can be confirmed that the edge of the character and the ambiguous stroke are restored more clearly when contrasting with the other previously suggested methods. Also, the proposed method’s PSNR and SSIM scores are geting 8% and 15% higher, respectively, compared to the previous methods.

Many complex networks have a connectivity that might be only partially detected or that tends to grow over time, hence the prediction of non-observed links is a fundamental problem in network science. The aim of topological link prediction is to forecast these non-observed links by only exploiting features intrinsic to the network topology. It has a wide range of real applications, like suggesting friendships in social networks or predicting interactions in biological networks.The Cannistraci-Hebb theory is a recent achievement in network science that includes a theoretical framework to understand local-based link prediction on paths of length n. In this study we introduce two innovations: theory of modelling (science) and theory of realization (engineering). For the theory of modelling we first recall a definition of network automata as a general framework for modelling the growth of connectivity in complex networks. We then show that several deterministic models previously developed fall within this framework and we introduce novel network automata following the Cannistraci-Hebb rule. For the theory of realization, we present how to build adaptive network automata for link prediction, which incorporate multiple deterministic models of self-organization and automatically choose the rule that better explains the patterns of connectivity in the network under investigation. We compare Cannistraci-Hebb adaptive (CHA) network automaton against state-of-the-art link prediction methods such as structural perturbation method (SPM), stochastic block models (SBM) and artificial intelligence algorithms for graph embedding. CHA displays an overall higher link prediction performance across different evaluation frameworks on 1386 networks. Finally, we highlight that CHA offers the key advantage to explicitly explain the mechanistic rule of self-organization which leads to the link prediction performance, whereas SPM and graph embedding not. In comparison to CHA, SBM unfortunately shows irrelevant and unsatisfactory performance demonstrating that SBM modelling is not adequate for link prediction in real networks.

Unmanned Aerial Vehicles (UAVs) in particular multirotors are becoming the {\it de facto} tool for aerial sensing and remote inspection. In large industrial facilities, a UAV can transmit an online video stream to inspect difficult to access structures, such chimneys, deposits and towers. However, the communication range is limited, constraining the UAV operation range. This limitation can be overcome with relaying UAVs placed between the source UAV and the control station, creating a line of communication links. In this work we assume the use of a digital data packet network technology, namely WiFi, and tackle the problem of defining the exact placement for the relaying UAVs that creates an end-to-end channel with maximal delivery of data packets. We consider asymmetric communication links and we show an increase as large as $15$\% in end-to-end packet delivery ratio when compared to an equidistant placement. We also discuss the deployment of such a network and propose a fully distributed method that converges to the global optimal relay positions taking, on average, 1.4 the time taken by a centralized method.

Corynebacterium glutamicum is a Gram-positive bacterium found in soil where the condition changes demand plasticity of the regulatory interactions, which study at the global scale has been challenged by the lack of data integration. Here, we update the manually-curated C. glutamicum transcriptional regulatory network, now including protein-protein interactions having a direct effect on gene transcription. The network model with regulations supported by any experimental evidence increased by 557 interactions regarding the previous (2018) version. 73 interactions supported by directed experiments were also included in a second model. We included 545 sRNA-mediated regulations in a third model with a total of 5164 interactions. We deposited the three network models in Abasy Atlas v2.4. We study the C. glutamicum regulatory structure by comparing it against the networks for more than 40 species, finding it to contrast in several global structural properties. We analyze the system-level components of the networks, finding that the inclusion of the sRNAs regulations changes their proportions, transferring part of the basal machinery to the modular class and increasing the number of modules while decreasing their size. Finally, we use strong networks of three model organisms to provide insights in future directions of the C. glutamicum network characterization.

The proliferation of mobile and IoT devices, coupled with the advances in the wireless communication capabilities of these devices, have urged the need for novel communication paradigms for such heterogeneous hybrid networks. Researchers have proposed opportunistic routing as a means to leverage the potentials offered by such heterogeneous networks. While several proposals for multiple opportunistic routing protocols exist, only a few have explored fuzzy logic to evaluate wireless links status in the network to construct stable and faster paths towards the destinations. We propose FQ-AGO, a novel Fuzzy Logic Q-learning Based Asymmetric Link Aware and Geographic Opportunistic Routing scheme that leverages the presence of long-range transmission links to assign forwarding candidates towards a given destination. The proposed routing scheme utilizes fuzzy logic to evaluate whether a wireless link is useful or not by capturing multiple network metrics, the available bandwidth, link quality, node transmission power, and distance progress. Based on the fuzzy logic evaluation, the proposed routing scheme employs a Q-learning algorithm to select the best candidate set toward the destination. We implement FQ-AGO on the NS-3 simulator and compare the performance of the proposed routing scheme with three other relevant protocols: AODV, DSDV, and GOR. For precise analysis, we consider various network metrics to compare the performance of the routing protocols. Our simulation result validates our analysis and demonstrates remarkable performance improvements in terms of total network throughput, packet delivery ration, and end-to-end delay.

In the age of social media your personal branding is critical to find a job. Information is highly available and handy for everyone looking for a job as well as for people trying to recruit employees at all levels. Currently, there is a first e-impression that encompasses employee education, qualifications, and relationships. This e-impression is given by your social media, specifically those websites that were built to facilitate interactions between employee and employer during the job-hunting process. There are different websites that enable you to establish a social network. For example, meet, Xing, Bark, Opportunity, Lunchmeet, and LinkedIn among others. This article is written by a group of young undergraduate and graduate researchers, who have noticed the importance of social networks to apply for graduate school and industry jobs. This manuscript offers ten simple rules that include resources to facilitate the journey on LinkedIn-like social networks, hoping that you have a successful career description in the most popular professional social networking site.

Background: Disruption of alternative splicing (AS) is frequently observed in cancer and it might represent an important signature for tumor progression and therapy. Exon skipping (ES) represents one of the most frequent AS events and in non-small cell lung cancer (NSCLC) MET exon 14 skipping was shown to be targetable. Methods: We constructed a neural network (NN) specifically designed to detect MET exon 14 skipping events using RNAseq data. Furthermore, for discovery purpose we also developed a sparsely connected autoencoder to identify uncharacterized MET isoforms. Results: The NN had 100% Met exon 14 skipping detection rate, when tested on a manually curated set of 690 TCGA bronchus and lung samples. When globally applied to 2605 TCGA samples, we observed that the majority of false positives was characterized by a blurry coverage of exon 14, but interesting they share a common coverage peak in the second intron and we speculate that this event could be the transcription signature of a LINE1-MET fusion. Conclusions: Taken together our results indicate that neural networks can be an effective tool to provide a quick classification of pathological transcription events and sparsely connected autoencoders could represent the basis for the development of an effective discovery tool.

Learning models of the cerebellum propose that the cerebellum implements an algorithm which makes iterative adjustments to synaptic transmission strength that collectively determine the response to input in learned patterns following training. We propose instead that pattern recognition and control of firing by output cells are separately handled functions which process independently variable data. This can account for the evidence without a machine learning algorithm. The model is a hybrid of physiological arguments and computational methods used to test and quantify the ideas. We argue inter alia that learning operates at the level of functional groups of Purkinje cells defined by their shared climbing fibre input; Golgi cells have several functions and regulation of parallel fibre activity by Golgi cells is not in the expected way; recoding of input to the cerebellum received in the granular layer converts the number of input variables (variables expressed in mossy fibre input to the system) into a much reduced number of functional variables expressed by internal signals traffic; circuits simultaneously execute separate but integrated functions of pattern memory and output coding; they are able to operate separately because the expression of data used in each varies independently of the other; output rates are not learned but controlled by recent relevant input signals in a window opened by pattern memory; the moment-to-moment probability that a Purkinje cell spikes is synchronised across a microzone; a principal function of functional organisation of Purkinje cells into microzones is to increase resolution of rate coded information received by the output cells of the circuit, and to do so in a very short integration window, so that circuit architecture can be explained partly as a device with this function.

Using smartphone especially android platform has already got eighty percent market shares, due to aforementioned report, it becomes attacker’s primary goal. There is a growing number of private data onto smart phones and low safety defense measure, attackers can use multiple way to launch and to attack user’s smartphones.(e.g. Using different coding style to confuse the software of detecting malware). Existing android malware detection methods use multiple features, like safety sensor API, system call, control flow structure and data information flow, then using machine learning to check whether its malware or not. These feature provide app’s unique property and limitation, that is to say, from some perspectives it might suit for some specific attack, but wouldn’t suit for others. Nowadays most malware detection methods use only one aforementioned feature, and these methods mostly analysis to detect code, but facing the influence of malware’s code confusion and zero-day attack, aforementioned feature extraction method may cause wrong judge. So, it’s necessary to design an effective technique analysis to prevent malware. In this paper, we use the importance of word from apk, because of code confusion, some malware attackers only rename variables, if using general static analysis wouldn’t judge correctly, then use these importance value to go through our proposed method to generate picture, finally using convolutional neural network to see whether the apk file is malware or not.

In this paper, we propose a novel network representation learning model TransPath to encode heterogeneous information networks (HINs). Traditional network representation learning models aim to learn the embeddings of a homogeneous network. TransPath is able to capture the rich semantic and structure information of a HIN via meta-paths. We take advantage of the concept of translation mechanism in knowledge graph which regards a meta-path, instead of an edge, as a translating operation from the first node to the last node. Moreover, we propose a user-guided meta-path sampling strategy which takes users' preference as a guidance, which could explore the semantics of a path more precisely, and meanwhile improve model efficiency via the avoidance of other noisy and meaningless meta-paths. We evaluate our model on two large-scale real-world datasets DBLP and YELP, and two benchmark tasks similarity search and node classification. We observe that TransPath outperforms other state-of-the-art baselines consistently and significantly.

Recent methodological advances have enabled researchers to track the network structure of the human brain over time. Together, these studies provide novel insights into effective brain function, highlighting the importance of the systems-level perspective in understanding the manner in which the human brain organizes its activity to facilitate behavior. Here, we review a range of recent fMRI and electrophysiological studies that have mapped the relationship between inter-regional communication and network structure across a diverse range of brain states. In doing so, we identify both behavioral and biological axes that may underlie the tendency for network reconfiguration. We conclude our review by providing suggestions for future research endeavors that may help to refine our understanding of the functioning of the human brain.

A road network represents road objects in a given geographic area and their interconnections, and is an essential component of intelligent transportation systems (ITS) enabling emerging new applications such as dynamic route guidance, driving assistance systems, and autonomous driving. As the digitization of geospatial information becomes prevalent, a number of road networks with a wide variety of characteristics coexist. In this paper, we present an area partitioning approach to the conflation of two road networks with a large difference in level of details. Our approach first partitions the geographic area by the Network Voronoi Area Diagram (NVAD) of low-detailed road network. Next, a subgraph of high-detailed road network corresponding to a complex intersection is extracted and then aggregated into a supernode so that a high matching precision can be achieved via 1:1 node matching. To improve the matching recall, we also present a few schemes that address the problem of missing corresponding object and representation dissimilarity between these road networks. Numerical results at Yeouido, Korea's autonomous vehicle testing site, show that our area partitioning approach can significantly improve the performance of road network matching.

Link prediction is an iconic problem in complex networks because deals with the ability to predict nonobserved existing or future parts of the network structure. The impact of this prediction on real applications can be disruptive: from prediction of covert links between terrorists in their social networks to repositioning of drugs in molecular diseasome networks. Here we compare: (1) an ensemble meta-learning method (Ghasemian et al.), which uses an artificial intelligence (AI) stacking strategy to create a single meta-model from hundreds of other models; (2) a structural predictability method (SPM, Lü et al.), which relies on a theory derived from quantum mechanics and does not assume any model; (3) a modelling rule named Cannistraci-Hebb (CH, Muscoloni et al.), which relies on one brain-bioinspired model adapting to the intrinsic network structure.We conclude that brute-force stacking of algorithms by AI does not perform better than (and is often significantly outperformed by) SPM and one simple brain-bioinspired rule such as CH. This agrees with the Gödel incompleteness: stacking is optimal but incomplete, you cannot squeeze out more than what is already in your features. Hence, we should also pursue AI that resembles human-like physical ‘understanding’ of simple generalized rules associated to complexity. The future might be populated by AI that ‘steals for us the fire from Gods’, towards machine intelligence that creates new rules rather than stacking the ones already known.