ARTICLE | doi:10.20944/preprints201803.0196.v2
Subject: Earth Sciences, Oceanography Keywords: sea level rise; sea level acceleration; segmented tide gauge records; earthquakes; Guam
Online: 2 April 2018 (05:56:00 CEST)
Many reported sea level records are often not a single measurement. They are then a composition of different records from several tide gauges. Sometimes, they are from the same tide gauge, but the tide gauge stability has been affected by earthquakes. This is the case of Guam as discussed in the present manuscript. The claimed sea level acceleration of Guam is only the result of two earthquakes that have compromised the stability of the tide gauge.
ARTICLE | doi:10.20944/preprints202001.0034.v1
Subject: Earth Sciences, Oceanography Keywords: improving sea level anomaly; satellite altimetry; parameters correction; The Red Sea; coastal
Online: 4 January 2020 (11:16:17 CET)
An improved FSM method is used in geophysical and environmental corrections to enhance the final product of the along track Jason-2 SLA data and extend it near the Red Sea borders. In this study the ionospheric correction range, wet tropospheric correction range, sea state bias correction range and dry tropospheric correction range are enhanced and improved using FSM01, which helped to retrieve three more tracks (106, 170 and 234), earlier neglected by the distribution centers, and extend the tracks towards the coast. The FSM01 SLA is compared with Jason-2 SLA and AVISO SLA for the available 5 tracks, in which the FSM01 SLA show a good agreement and higher correlation with the Jason-2 SLA compared with that of AVISO, in addition to that it fills the gaps in the times series of all tracks. The new retrieved tracks also compared with those retrieved by AVISO, both data show similar variability, with FSM01 SLA show no gaps in the time series. The FSM01 SLA also extended towards the coast and show high correlation with the coastal tide measurements.
REVIEW | doi:10.20944/preprints202101.0052.v1
Subject: Earth Sciences, Atmospheric Science Keywords: submerged speleothem, phreatic speleothem, sea level change, sea caves, GIA.
Online: 4 January 2021 (15:55:39 CET)
The investigation of submerged speleothems for sea level studies has made significant contributions to the understanding of the global and regional sea level variations during the Middle and Late Quateranry. This has been especially the case for the Mediterranean Sea, where more than 300 submerged speleothems sampled in 32 caves have been analysed so far. Here, we present a comprehensive review of the results obtained from the study of submerged speleothems since 1978. The studied speleothems cover the last 1.4 Ma and are focused mainly on Marine Isotope Stages (MIS) 1, 2, 3, 5.1, 5.3, 5.5, 7.1, 7.2, 7.3 and 7.5. Results reveal that submerged speleothems represent extraordinary archives providing accurate information on former sea level changes, also considering that the Mediterranean Sea is devoid of any tropical corals since the Miocene. New results from a stalagmite collected at Palinuro (Campania, Italy) characterized by marine overgrowth are also reported. The measured elevations of speleothems are contaminated by the local response to glacial- and hydro-isostatic adjustment (GIA), and thus might significantly deviate from the global eustatic signal. Age and altitude comparation between Mediterranean speleothems, flowstone from Bahamas with local GIA provide a new scenario for MIS 5 and 7 sea level reconstrutions.
REVIEW | doi:10.20944/preprints202105.0100.v1
Subject: Earth Sciences, Atmospheric Science Keywords: submerged speleothem; phreatic speleothem; sea level change; sea caves; vertical tectonic movements; Ustica; Favignana
Online: 6 May 2021 (15:11:18 CEST)
This study presents a world review as well as new additional data in form of submerged speleothems that are used for paleo sea level reconstructions. Speleothems significantly contributed to the understanding of the global and regional sea level variations during the Middle and Late Quaternary. The studied speleothems cover the last 1.4 Myr and are focused mainly on Marine Isotope Stages (MIS) 1, 2, 3, 5.1, 5.3, 5.5, 7.1, 7.2, 7.3 and 7.5. Results reveal that submerged speleothems represent extraordinary archives providing detailed information on former sea level changes. We present also new results from stalactites collected in central Mediterranean sea, at Favignana and Ustica islands (Sicily, Italy), both characterized by continental, phreatic or marine layers. The study and analysis of the latter speleothems provide results of great interest for relative sea level changes over the last 1000 years.
ARTICLE | doi:10.20944/preprints202206.0006.v1
Subject: Earth Sciences, Oceanography Keywords: Sea Level Rise; coastal flooding; JPM; Gumbel; exceedance; extreme value statistics; flood return period; sea-defences
Online: 1 June 2022 (05:58:45 CEST)
AbstractLocal estimates of coastal flood risk are required for coastal planning and development, including the location and design of sea-defences and coastal buildings, such as harbours and associated infrastructure. This paper discusses the use of three parameters associated with estimating such risks; the flood return period, the instantaneous flood probability and the flood design risk, and it describes the mathematical background for their derivation. The discussion is extended to include the effects of sea level rise and how it can be incorporated into the calculations. Flood height can vary quite rapidly with distance along the coast, being affected by coastal topology, which may magnify or diminish the tidal and surge effects. Similarly land heave influences the local effects of sea level rise and can be influenced by water extraction, tectonic movements and melting ice. Tide gauge measurements provide a local historical record from which the various parameters can be retrieved. This paper discusses the algorithms used to derive these measures from tide-gauge records. The figures have been derived for four tide gauges located on the UK east coast.
ARTICLE | doi:10.20944/preprints201902.0113.v1
Subject: Physical Sciences, General & Theoretical Physics Keywords: Cascais tide gauge; sea level rise; sea level acceleration; sea level projection; SLR probability density function; uplift derived from SLR
Online: 13 February 2019 (10:45:09 CET)
Data collected at the Cascais tide gauge, located on the west coast of Portugal Mainland, have been analyzed and sea level rise rates have been updated. Based on a bootstrapping linear regression model and on polynomial adjustments, time series are used to calculate different empirical projections for the 21st century sea level rise, by estimating the initial velocity and its corresponding acceleration. The results are consistent to an accelerated sea level rise, showing evidence of a faster rise than previous century estimates. Based on different numerical methods of second order polynomial fitting, it is possible to build a set of projection models of relative sea level rise. Appling the same methods to regional sea level anomaly from satellite altimetry, additional projections are also built with good consistency. Both data sets, tide gauge and satellite altimetry data, enabled the development of an ensemble of projection models. The relative sea level rise projections are crucial for national coastal planning and management since extreme sea level scenarios can potentially cause erosion and flooding. Based on absolute vertical velocities obtained by integrating global sea level models, neo-tectonic studies and permanent Global Positioning System (GPS) station time series, it is possible to transform relative into absolute sea level rise scenarios, and vice-versa, allowing the generation of absolute sea level rise projection curves and its comparison with already established global projections. The sea level rise observed at the Cascais tide gauge has always shown a significant correlation with global sea level rise observations, evidencing relatively low rates of composed vertical land velocity from tectonic and post-glacial isostatic adjustment, and residual synoptic regional dynamic effects rather than a trend. An ensemble of sea level projection models for the 21st century is proposed with its corresponding probability density function, both for relative and absolute sea level rise for the west coast of Portugal Mainland.
ARTICLE | doi:10.20944/preprints202008.0586.v1
Subject: Earth Sciences, Oceanography Keywords: Sea level; GNSS; NEMO reanalysis; tide gauges; pressure buoys; geoid model; CMEMS; Copernicus
Online: 26 August 2020 (12:35:30 CEST)
Multimission satellite altimetry (e.g. ERS, Envisat, TOPEX/Poseidon, Jason) data have enabled a synoptic view of ocean variations in the past decades, including sea-level rise and mesoscale circulations. Since 2016, the Sentinel-3 mission has provided better spatial and temporal sampling compared with its predecessors. The Sentinel-3 Ku/C Radar Altimeter (SRAL) is one of the synthetic aperture radar altimeters (SAR Altimeter) which is more precise in coastal and lake observations. In this study, we validate Sentinel-3 Level-2 products in Baltic Sea coastal areas and two lakes in Estonia. Moreover, the Copernicus Marine Environment Monitoring Service (CMEMS) Level-3 sea-level anomaly data and the Nucleus for European Modelling of the Ocean (NEMO) reanalysis model outcomes are compared with measurements from a tide gauge network. A dense in situ water level network deployed along the coast for geodetic observation was utilised to provide ground truths for validating altimetry results. Three validation methods were used for Level-2 data: (i) collocated Sentinel-3 and GNSS ship measurements; (ii) a national geoid model (EST-GEOID2017) with sea-level anomaly correction; (iii) collocated Sentinel-3 and buoy measurements. The validations were carried out in seven Sentinel-3A/B overpasses in 2019. Our results show that the uncertainty of the Sentinel-3 Level-2 altimetry product is below decimetre level on the Estonian coast and the targeted lakes. Results from CMEMS Level-3 showed a correlation of 0.8 (RMSE 0.19 m) and 0.91 (RMSE 0.27 m) when compared against tide gauge measurements and NEMO model, respectively.
ARTICLE | doi:10.20944/preprints202108.0214.v1
Subject: Engineering, Civil Engineering Keywords: sea level rise; climate change; infrastructure; coastal engineering
Online: 10 August 2021 (08:47:00 CEST)
The national study analyzes sea level rise (SLR) impacts based on 36 different SLR and storm surge scenarios across 5.7 million geographic locations and 3 time periods. Taking an approach based on engineering design guidelines and current cost estimates, the study details projected cost impacts for states, counties, and cities. These impacts are presented from multiple perspectives including total cost, cost per-capita, and cost per-square mile. The purpose of the study is to identify specific locations where infrastructure is vulnerable to rising sea levels. The study finds that Sea Level Rise (SLR) and minimal storm surge is a $400 billion threat to the United States by 2040 that includes a need for at least 50,000 miles of protective barriers. The research is limited in its scope to protecting coastal infrastructure with sea walls. Additional methods exist and may be appropriate in individual situations. The study is original in that it is a national effort to identify infrastructure that is vulnerable as well as the cost associated with protecting this infrastructure.
ARTICLE | doi:10.20944/preprints202107.0170.v1
Subject: Earth Sciences, Atmospheric Science Keywords: Marine Isotope Stage 3; sea level; tectonics; GIA; Calabria
Online: 7 July 2021 (08:42:48 CEST)
Investigation of sea-level positions during the highly-dynamic Marine Isotope Stage 3 (MIS 3: 29-61 kyrs BP) proves difficult because: i) in stable and subsiding areas, coeval coastal sediments are currently submerged at depths of few to several tens of meters below present sea level; ii) in uplifting areas, the preservation of geomorphic features and sedimentary records is limited due to the erosion occurred during the Last Glacial Maximum (LGM) with sea level at depth of -130 m, followed by marine transgression that determined the development of ravinement surfaces. This study discusses previous research in the Mediterranean and elsewhere, and describes new fossiliferous marine deposits laying on metamorphic bedrock of Cannitello (Calabria, Italy). Radiocarbon ages of marine shells (about 43 kyrs cal BP) indicate that these deposits, presently between 28 and 30 meters above sea level, formed during MIS 3.1. Elevation correction of the Cannitello outcrops (considered in an intermediate-to-far-field position with respect to the ice sheet) with the local vertical tectonic rate and Glacial Isostatic Adjustment (GIA) rate allows to propose a revision of the eustatic depth for this highstand. Our results are consistent with recently proposed estimates based on a novel ice sheet modelling technique.
ARTICLE | doi:10.20944/preprints201610.0002.v1
Subject: Earth Sciences, Oceanography Keywords: Destriping; Undecimated wavelet transform; Fourier filtering; Sea Surface Temperature; Ocean color
Online: 3 October 2016 (20:39:17 CEST)
This paper introduces a new destriping algorithm for remote sensing data. The method is based on combined Haar Stationary Wavelet transform and Fourier filtering. State-of-the-Art methods based on the discrete wavelet transform (DWT) may not always be effective and may cause different artifacts. Our contribution is three-fold: i) we propose to use the Undecimated Wavelet transform (UWT) to avoid as much as possible shortcomings of the classical DWT; ii) we combine a spectral filtering and UWT using the simplest possible wavelet, the Haar basis, for a computational efficiency; iii) we handle 2D fields with missing data, as commonly observed in ocean remote sensing data due to atmospheric conditions (e.g., cloud contamination). The performances of the proposed filter are tested and validated on the suppression of horizontal strip artifacts in cloudy L2 Sea Surface Temperature (SST) and ocean color snapshots.
ARTICLE | doi:10.20944/preprints201910.0202.v1
Subject: Earth Sciences, Geophysics Keywords: sea level rise; coastlines; 2100; heritage sites; Pyrgi; Mediterranean; UAV; DSM
Online: 17 October 2019 (14:56:12 CEST)
Sea level rise is one of the main factor of risk for the preservation of cultural heritage sites located along the coasts of the Mediterranean basin. Coastal retreat, erosion and storm surges are yet posing serious threats to archaeological and historical structures built along the coastal zones of this region. In order to assess the coastal changes by the end of 2100 under an expected sea level rise of about 1 m, a detailed determination of the current coastline position and the availability of high resolution DSM, is needed. This paper focuses on the use of very high-resolution UAV imagery for the generation of ultra-high resolution mapping of the coastal archaeological area of Pyrgi, near Rome (Italy). The processing of the UAV imagery resulted in the generation of a DSM and an orthophoto, with an accuracy of 1.94 cm/pixel. The integration of topographic data with two sea level rise projections in the IPCC AR5 2.6 and 8.5 climatic scenarios for this area of the Mediterranean, were used to map sea level rise scenarios for 2050 and 2100. The effects of the Vertical Land Motion (VLM) as estimated from two nearby continuous GPS stations located as much as close to the coastline, were included in the analysis. Relative sea level rise projections provide values at 0.30±0.15 cm by 2050 and 0.56±0.22 by 2100, for the IPCC AR5 8.5 scenarios and at 0.13±0.05 cm by 2050 and 0.17±0.22 by 2100, for the IPCC AR5 2.6 scenario. These values of rise will correspond to a potential beach loss between 12.6% and 23.5% in 2100 for RCP 2.6 and 8.5 scenarios, respectively, while during the highest tides the beach will be reduced up to 46.4%. With these sea level rise scenarios, Pyrgi with its nearby Etruscan temples and the medieval castle of Santa Severa will be soon exposed to high risk of marine flooding, especially during storm surges, thus requiring suitable adaptation strategies.
ARTICLE | doi:10.20944/preprints201905.0052.v1
Subject: Earth Sciences, Geophysics Keywords: sea level rise; coastal flood hazard; storm surge; extreme tidal level; GIS
Online: 6 May 2019 (10:57:09 CEST)
Portugal Mainland has hundreds of thousands of people living in the Atlantic coastal zone, with numerous high economic value activities and a high number of infrastructures that must be protected from natural coastal hazard, namely extreme storms and sea level rise (SLR). In the context of climate change adaptation strategies, a reliable and accurate assessment of the physical vulnerability to SLR is crucial. This study is a contribution to the implementation of flooding standards imposed by the European Directive 2007/60/EC, which requires each member state to assess the risk associated to SLR and floods caused by extreme events. Therefore, coastal hazard in the Continental Atlantic coast of Portugal Mainland was evaluated for 2025, 2050 and 2100 in the whole coastal extension with different sea level scenarios for different extreme event return periods and due to SLR. A coastal flooding probabilistic map was produced based on the developed methodology using Geographic Information Systems (GIS) technology. The Extreme Flood Hazard Index (EFHI) was determined on flood probabilistic bases through five probability intervals of 20% of amplitude. For a given SLR scenario, the EFHI is expressed, on the probabilistic flooding maps for an extreme tidal maximum level, by five hazard classes ranging from 1 (Very Low) to 5 (Extreme).
ARTICLE | doi:10.20944/preprints202007.0630.v1
Subject: Engineering, Civil Engineering Keywords: managed retreat; dynamic adaptive policy pathways; sea-level rise; water infrastructure; stormwater; wastewater; coastal flooding; climate change
Online: 26 July 2020 (02:38:50 CEST)
Frequent flooding from sea-level rise (SLR) is one of the immediate climate change impacts affecting low-lying and exposed coastal communities. These communities rely upon the delivery of three-waters services for wastewater, stormwater and water supply. Due to ongoing SLR, managing these networks will increasingly be a challenge. This raises the issue of how local government can reconcile maintaining levels of service as the impacts of climate change and their uncertainties worsen over the coming decades (and beyond). Can they be adapted over time to retain levels of service or will they eventually require retreat and if so at what adaptation threshold? This paper explores managed retreat of two-waters infrastructure (wastewater and stormwater) as an adaptation option using a Dynamic Adaptive Pathway Planning (DAPP) approach. In the study, we use DAPP to frame the retreat of two-water networks, developing a combination of an area specific retreat strategy, pathway portfolios, retreat phases, land use change signaling and identify pathway conflicts and synergies. Repurposing retreated areas by utilizing Water Sensitive Urban Design (WSUD) options was found to extend retreat thresholds for adjacent areas. A systematic ’routine’ developed in this study provides a structured approach for managed retreat of two-water infrastructure with the aim to reduce future disruption from flooding, signal land use changes early and allow for gradual budget adjustments by the agencies to manage expenditure over time. This approach helps inform and improve the decision-making process for the agencies and the communities they serve, by providing a stepwise process that can be communicated spatially and visually, thereby making a retreat adaptation option more manageable.
ARTICLE | doi:10.20944/preprints201912.0366.v1
Subject: Earth Sciences, Environmental Sciences Keywords: European Directive 2007/60/EC; sea level rise; coastal vulnerability; GIS; Portugal Coast; WMS; WebViewer
Online: 27 December 2019 (10:58:21 CET)
The sea level rise, a consequence of climate change, is one of the biggest challenges that countries and regions with coastal lowland areas will face in the medium term. This study proposes a methodology for assessing the vulnerability to sea level rise (SLR) on the Atlantic coast of Portugal mainland. Some scenarios of extreme sea level for different return periods and extreme flooding events were estimated for 2050 and 2100, as proposed by the European Union Directive 2007/60/EC. A set of physical parameters are considered for the multi-attribute analysis technique implemented by the Analytic Hierarchy Process, in order to define a Physical Vulnerability Index fundamental to assess coastal vulnerability. For each SLR scenario, coastal vulnerability maps, with spatial resolution of 20 m, are produced at national scale to identify areas most at risk of SLR, constituting key documents for triggering adaptation plans for such vulnerable regions. For 2050 and 2100, it is estimated 903 km2 and 1146 km2 of vulnerable area, respectively, being the district of Lisbon the most vulnerable district in both scenarios. Results are available through a Web Map Service, for Portuguese public entities, and through a web map viewer for public and communities in general.
Subject: Keywords: central Mediterranean, coastal Plains, sea level at 2100 and 2300, Sardinia, Pontina Plain
Online: 13 August 2021 (08:51:17 CEST)
Mediterranean Sea are dynamic habitats in which human activities have been conducted for centuries and which feature micro-tidal environments with about 0.40 m of range. For this reason, human settlements are still concentrated along a narrow coastline strip, where any change in the sea level and coastal dynamics may impact anthropic activities. We analyzed light detection and ranging (LiDAR) and Copernicus Earth Observation data. Aim of this research is to provide estimates and detailed maps (in three coastal plain of Sardinia (Italy) and in the Pontina Plain (southern Latium, Italy) of: i) the past marine trasgression occurred during MIS 5.5 higstand 119 kyrss BP; ii) the coastline regression occurred during the last glacial maximum MIS 2 (21.5 krs cal BP) and iii) the potential marine submersion for 2100 and 2300. The objective of this multidisciplinary study is to provide maps of sea-level rise future scenarios using the IPCC RCP 8.5 2019 projections and glacio-hydro-isostatic movements for the above selected coastal zones, which are the locations of touristic resorts, railways, and heritage sites. We estimated a potential loss of land for the above areas of between about 146 km2 (IPCC 2019-RCP8.5 scenario ) and 637 km2 along a coastline length of about 268 km.
ARTICLE | doi:10.20944/preprints202209.0427.v1
Subject: Earth Sciences, Environmental Sciences Keywords: sea cucumber; enhancement; Holothuria scabra; sea ranching
Online: 28 September 2022 (03:24:25 CEST)
Holothuria scabra Jaeger 1833, known as sandfish visually, Its visible external body has a soft, flexible texture. Sandfish is included in the Echinodermata phylum and Holothuroidea class, which has an important ecological and economic role. This research proposes to decide the suitability site in an intermediate culture model of sea ranching harvest type based on ecological, socio-cultural and Karimunjawa National Park zoning plan. Data collected has done in March 2020, November 2020 and August 2021. The data analysed on the environmental suitability level was based on several essential criteria matrices used by ArcGIS 10.8.2. They were four classes performed (high suitable, suitable that is enough, suitable with conditionals, and not suitable) based on each variable and matrix classification from main factor (6 variables), supporting factor (5 variables), dan another factors (1 variable). The highest score was 35, and the lowest was 23 during the class interval value. The analysis showed that the aquatic environment that was High Suitable (S1) for sandfish life was Gede Lagoon. It has been determined to be highly suitable for developing sandfish cultivation. Furthermore, the Sea Ranching Harvesting Type development would recommend being carried out in waters that do not have limiting factors.
ARTICLE | doi:10.20944/preprints202103.0100.v1
Subject: Biology, Anatomy & Morphology Keywords: Amphistegina lobifera; Red Sea; pH microsensor; global warming; thermal stress; ocean acidification; large benthic foraminifera; coral reef; LC-MS/MS proteomics; photosymbiotic calcifier
Online: 2 March 2021 (15:52:01 CET)
Reef-dwelling calcifiers face numerous environmental stresses associated with anthropogenic carbon dioxide emissions, including ocean acidification and warming. Photosymbiont-bearing calcifiers, such as large benthic foraminifera, are particularly sensitive. To gain insight into their resistance and adaptive mechanisms to climate change, Amphistegina lobifera from the Gulf of Aqaba were cultured under elevated pCO2 (492, 963, and 3182 ppm) fully-crossed with elevated temperature (28°C and 31°C) for two months. Differential protein abundances in host and photosymbionts amongst treatments were investigated alongside physiological responses and microenvironmental pH variations. Over 1000 proteins were identified, of which one-third varied significantly between treatments. Thermal stress induced protein depletions, along with reduced holobiont growth. Elevated pCO2 caused only minor proteomic alterations and color changes. However, combined stressors reduced pore sizes and increased microenvironmental pH, indicating adaptive modifications to gas exchange. Notably, substantial proteomic variations at moderate-pCO2 and 31°C indicate cellular stress, while stable physiological performance at high-pCO2 and 31°C is scrutinized by putative decreases in test stability. Our experiment shows that the effects of climate change can be missed when stressors are assessed in isolation, and that physiological responses should be assessed across organismal levels to make more realistic predictions for the fate of reef calcifiers.
ARTICLE | doi:10.20944/preprints201808.0276.v1
Subject: Earth Sciences, Oceanography Keywords: typhoon; sea surface temperature; sea surface height anomaly; sea surface cooling; warm eddy; cold eddy
Online: 15 August 2018 (15:41:28 CEST)
Studying the interaction between the upper ocean and the typhoons is crucial to improve our understanding of heat and momentum exchange between the ocean and the atmosphere. In recent years, the upper ocean responses to typhoons have received considerable attention. The sea surface cooling (SSC) process has been repeatedly discussed. In the present work, case studies were examined on five strong and super typhoons that occurred in 2016—LionRock, 1610; Meranti, 1614; Malakas, 1616; Megi, 1617; and Chaba 1618—to search for more evidence and new features of typhoon’s impact on the sea surface environment. The typhoon monitoring data from the Central Meteorological Observatory, the sea surface temperature (SST) data from satellite microwave and infrared remote sensing, and the sea surface height anomaly (SSHA) data from satellite altimeters were used to analyze in detail: the SSC features caused by typhoons, the relationship between the SSC and the typhoon travelling speed, and the variations in cold and warm eddies during typhoon passage. Results showed that: (1) SSC generally occurred during typhoon passage and the degree of SSC was always determined by the strength and the travelling speed of the typhoon, as well as the initial SST. (2) One day before or on the day of typhoon passage, the SSHA slightly increased due to low surface pressure. After the typhoon passed, the SSHA obviously decreased along with the SSC. The pre-existing positive SSHAs, which always represent warm eddies, decreased or disappeared during typhoon passage, whereas negative SSHAs or cold eddies were enhanced. (3) New cold eddies were generated, especially at the turning points of the typhoon path. The presence of warm eddies is suggested to have a strengthening effect on the typhoons.
ARTICLE | doi:10.20944/preprints201801.0157.v1
Subject: Engineering, Civil Engineering Keywords: Coagulation; Desalination; Salton Sea; Sea Water Reverse Osmosis; Treatability
Online: 17 January 2018 (12:09:05 CET)
As freshwater sources of drinking water become limited cities and urban areas must consider higher-salinity waters as potential sources of drinking water. The Salton Sea in the Imperial Valley of California has a very high salinity (43 ppt), total dissolved solids (70,000 mg/L) and color (1440 CU). Proposals to desalinate the Salton Sea are expected to lower the equilibrium salinity from 45 ppt to 3 ppt yielding significant benefits for ecological restoration. High salinity eutrophic waters such as the Salton Sea are difficult to treat yet more desirable sources of drinking water are not always available. Jar tests were performed to evaluate the treatability of Salton Sea water for potential urban water use by coagulation using aluminum chlorohydrate, ferric chloride and alum. Coagulation-sedimentation proved to be relatively ineffective for lowering turbidity with no clear optimum dose for any of the coagulants tested. Alum was most effective for color removal (28 percent) at a dose of 40 mg/L. Turbidity was removed effectively with 0.45 m and 0.1 m microfiltration. Bench tests of Salton Sea water using Sea Water Reverse Osmosis (SWRO) achieved rejections of 99 percent salinity, 97.7 percent conductivity, 98.6 percent total dissolved solids, 98.7 percent chloride, 65 percent sulfate, and 99.3 percent turbidity.
ARTICLE | doi:10.20944/preprints202206.0161.v1
Subject: Earth Sciences, Environmental Sciences Keywords: Bedono Village; GPDRR UNDRR 2022; the Bali Agenda for Resilience; the Sendai Framework; sea level rise
Online: 10 June 2022 (11:04:07 CEST)
The recent global calamity of sea level rise and flooding is a major disaster. Some settlements on Java Island, Indonesia, have been reported to be sinking. Bedono Village is one village on the Central Java Coast that is vulnerable to sea level rise. Aside from the possibility of sea level rise, the calamity in this village is linked to prior mangrove degradation and fish pond expansion. This tragedy has displaced 78.63% of the population over a decade, and the remaining population is still surviving in the remaining lands. This study aims to investigate the effects of sea-level rise-related permanent inundation on the lives of the remaining residents in Bedono Village, with a focus on their adaptation and resilience methods. The results disclosed that remaining populations have taken active initiation by adopting multiple strategies that include structural prevention measures and nature based solution through mangrove reforestations. As a result based on mangrove assessment using Geographic Information Systems, mangrove cover increased from 1 ha in 2010 to 9.5 ha in 2012. This achievement has provided an alternative income through mangrove ecotourism. Women and multi stakeholder participation have also contributed to the implementation of adaptation strategy. Despite those significant achievements, the adaptation and resilience was challenged by lack of education and awareness towards sea level rise issues and their confounding disasters. The nature-based solution and local wisdom in Bedono Village is an example that is in line with GPDRR UNDRR 2022, the Sendai Framework, and The Bali Agenda for Resilience that ensures a whole-of-society approach to sea-level rise by ensuring that no one is left behind, creating an inclusive environment, and promoting gender.
ARTICLE | doi:10.20944/preprints202105.0396.v1
Subject: Earth Sciences, Atmospheric Science Keywords: ensemble modelling; seafloor mapping; sediment change analysis; seafloor sediment distribution; North Sea; seafloor classification; acoustic mapping; small sample size; ensemble map
Online: 17 May 2021 (16:58:50 CEST)
Recent studies on seafloor mapping have presented different modelling methods for the automatic classification of seafloor sediments. However, most of these studies have applied these models to seafloor data with appropriate number of ground-truth samples, which raises the question whether these methods are applicable to studies with smaller numbers of ground-truth data. In this study, we aim to address this issue by conducting sediment class-specific predictions using ensemble modelling to map areas with limited or without ground-truth data and combined with hydro-acoustic datasets. The resulting class-specific maps were then assembled into one map, where the most probable class was assigned to the appropriate location. Our approach was able to predict sediment classes without bias to the class with more ground-truth data and produced reliable seafloor sediment distributions maps that can be used for seafloor monitoring. Sediment shifts of a heterogenous seafloor in the Sylt Outer Reef, German North Sea were also assessed to understand the sediment dynamics in the area. The analyses of sediment shifts showed that the western area of the Sylt Outer Reef is highly active, and the results of the analyses assisted in providing recommendations on future seafloor monitoring activities.
ARTICLE | doi:10.20944/preprints201704.0045.v1
Subject: Earth Sciences, Environmental Sciences Keywords: ports, waste management, Baltic Sea, cruise ships, sea environment, recycling
Online: 7 April 2017 (12:44:20 CEST)
The cruise ship industry has become a well-implemented industry in the Baltic Sea area, and each year, the number of cruise ship passengers rises steadily. Efficient waste management in cruising ports around the Baltic Sea is a crucial element in minimizing environmental impacts. This research involves the four selected ports of Copenhagen, Helsinki, Stockholm and Tallinn. The study applies statistics and interview data to the analysis of waste management systems for cruise ship-generated waste. The interview data involves 14 executives and professionals responsible for environmental issues and decision making in their respective ports. The interviews highlighted the need for standardized environmental legislation and related procedures, which would result in coherent measurement systems. These systems would enable transparent environmental monitoring, thus maintaining the ports’ competitiveness. A common environmental legislation would support the emerging waste management system for the whole Baltic Sea area. We suggest that ports should focus on handling specific types of wastes and collaborate as a spatial network. Specialization to allow discharge of certain fractions of waste is essential. The paper concludes by addressing demands for future research, particularly vessel- and customer behavior focused studies.
ARTICLE | doi:10.20944/preprints201905.0309.v1
Subject: Earth Sciences, Oceanography Keywords: MODIS; oceanography; remote sensing; Saildrone; sea surface salinity; sea surface temperature; SMAP; validation
Online: 27 May 2019 (10:19:17 CEST)
Traditional ways of validating satellite-derived sea surface temperature (SST) and sea surface salinity (SSS) products, using comparisons with buoy measurements, do not allow for evaluating the impact of mesoscale to submesoscale variability. Here we present the validation of remotely-sensed SST and SSS data against the unmanned surface vehicle (USV) – Saildrone – measurements from the Spring 2018 Baja deployment. More specifically, biases and root mean square differences (RMSD) were calculated between USV-derived SST and SSS values, and six satellite-derived SST (MUR, OSTIA, CMC, K10, REMSS, and DMI) and three SSS (JPLSMAP, RSS40, RSS70) products. Biases between the USV SST and OSTIA/CMC/DMI were approximately zero while MUR showed a bias of 0.2C. OSTIA showed the smallest RMSD of 0.36C while DMI had the largest RMSD of 0.5C. An RMSD of 0.4C between Saildrone SST and the satellite-derived products could be explained by the daily variability in USV SST which currently cannot be resolved by remote sensing measurements. For SSS, values from the JPLSMAP product showed saltier biases of 0.2 PSU, while RSS40 and RSS70 showed fresh biases of 0.3 PSU. An RMSD of 0.4 PSU could not be explained solely by the daily variability of the USV-derived SSS. Coherences were significant at the longer wavelengths, with a local maximum at 100 km that is most likely associated with the mesoscale turbulence in the California Current System.
ARTICLE | doi:10.20944/preprints201805.0442.v2
Online: 27 July 2018 (06:19:37 CEST)
Oil spills are adverse events that may be very harmful to ecosystems and food chain. In particular, large sea oil spills are very dramatic occurrence often affecting sea and coastal areas. Therefore the sustainability of oil rig infrastructures and oil transportation via oil tankers are linked to law enforcement based on proper monitoring techniques which are also fundamental to mitigate the impact of such pollution. Within this context, in this study a meaningful showcase is analyzed using remotely sensed measurements collected by the Synthetic Aperture Radar (SAR) operated by the COSMO-SkyMed (CSK) constellation. The showcase presented refers to the Deepwater Horizon (DWH) oil incident that occurred in the Gulf of Mexico in 2010. It is one of the world's largest incidental oil pollution event that affected a sea area larger than 10,000 km2. In this study we exploit, for the first time, dual co-polarization SAR data collected by the Italian CSK X-band SAR constellation showing the key benefits of HH-VV SAR measurements in observing such a huge oil pollution event, especially in terms of the very dense revisit time offered by the CSK constellation.
ARTICLE | doi:10.20944/preprints202106.0207.v1
Subject: Earth Sciences, Oceanography Keywords: striations; satellite data; sea surface temperature; sea surface salinity; chlorophyll-a; eastern boundaries; Pacific Ocean
Online: 8 June 2021 (10:31:07 CEST)
Eastern boundary upwelling systems feature strong zonal gradients of physical and biological ocean properties between cool, productive coastal oceans and warm, oligotrophic subtropical gyres. Zonal currents and jets (striations) are therefore likely to contribute to the transport of water properties between coastal and open oceanic regions. Multi-sensor satellite data are used to characterize the signatures of striations in sea surface temperature (SST), salinity (SSS), and chlorophyll-a (Chl-a) in subtropical eastern North/South Pacific (ENP/ESP) upwelling systems. In the ENP, tracers exhibit striated patterns extending up to ~2500 km offshore. Striations in SST and SSS are highly correlated with quasi-zonal jets, suggesting that these jets contribute to SST/SSS mesoscale patterns via zonal advection. Chl-a striations are collocated with sea surface height (SSH) bands, a possible result of mesoscale eddy trains trapping nutrients and forming striated signals. In the ESP, striations are only found in SST and coincide with SSH bands, consistently with quasi-zonal jets located outside major zonal tracer gradients. An interplay between large-scale SST/SSS advection by the quasi-zonal jets, mesoscale SST/SSS advection by the large-scale meridional flow and eddy advection may explain the persistent ENP hydrographic striations. These results underline the importance of quasi-zonal jets for surface tracer structuring at the mesoscale.
REVIEW | doi:10.20944/preprints202209.0303.v1
Subject: Medicine & Pharmacology, Dermatology Keywords: Ultraviolet irradiation; Dead Sea; psoriasis; photoclimatotherapy
Online: 20 September 2022 (10:23:03 CEST)
The Dead Sea basin is the lowest terrestrial site on the globe and is internationally recognized as a photoclimatotherapy center. Since the last century, questions raised regarding the possible presence of a unique incident ultraviolet irradiation, allowing successful treatment of psoriasis, atopic dermatitis and other dermatological diseases. Aim: Determine the characteristics of the solar ultraviolet irradiation and understand the mechanism of action of photoclimatotherapy while applying the results to clinical protocols of treatment. Methods: A meteorological station was established at the Dead Sea basin to continuously measure global, UVB and UVA irradiation. The same irradiation parameters are also being monitored continuously by a set of identical ultraviolet irradiation instruments installed on the campus of the Ben-Gurion University of the Negev, in Beer Sheva. Results: This study details the results of these long-term measurements, ae well as their correlation with the success obtained by clinicians treating psoriasis patients. Conclusions: A database of more than 25 years has enabled the medical staff to establish tailor-made protocols for sun-exposure time intervals as a function of particular month and hour of day. The availability of such information has significantly improved the results of photoclimatotherapy for psoriasis and at the same time increasing the safety of sun-exposure at the Dead Sea.
ARTICLE | doi:10.20944/preprints202103.0177.v1
Subject: Earth Sciences, Atmospheric Science Keywords: Sea fog; Formation; Evolution; Dissipation; Turbulence
Online: 5 March 2021 (09:20:04 CET)
Sea fog event over the Eastern Yellow Sea on 15–16 April 2012 was reproduced in the Weather Research and Forecasting (WRF) simulation with high-resolution to investigate the roles of phys-ical processes and synoptic-scale flows on advection fog with sea surface warming. Initially, longwave radiative cooling (LRC) with negative sensible heat flux (SHF) due to the turbulence af-ter sunset triggered a formation of cloud at the surface under the moist advection with a southerly wind. This is a conventional type of advection fog. At night, continuous cooling due to longwave radiation and SHF near the surface modulated the change of the SHF from negative to positive, resulting in a drastic increase in the latent heat flux (LHF) that provided sufficient moisture at lower atmosphere (self-moistening). This is a favorable condition for advection fog with sea sur-face heating (ssH), and this transition represents advection fog with ssH. Enhanced turbulent mixing driven by a buoyancy force increased the depth of the sea fog with a gradual rise in the marine atmospheric boundary layer (MABL) height, even at nighttime. In addition, cold advec-tion with a prevailing northerly wind at the top of the MABL led to a drastic increase in turbulent mixing and the MABL height, which resulted in rapid growth of the height of sea fog due to ver-tical diffusion. After sunrise, shortwave radiative warming in the fog layers offsetting the LRC near the surface weakened thermal instability, which contributed to the reduction in the MABL height, even during the daytime. In addition, dry advection of northerly wind induced dissipa-tion of the fog via evaporation. An additional sensitivity test of sea surface salinity showed weaker and shallower sea fog than the control due to the decrease in both the LHF and local self-moistening.
ARTICLE | doi:10.20944/preprints201807.0577.v1
Online: 30 July 2018 (10:08:16 CEST)
The data assimilation method to improve sea fog forecast over the Yellow Sea is usually three-dimensional variational assimilation (3DVAR), whereas ensemble Kalman filter (EnKF) has not yet been applied on this weather phenomenon. In this paper, two sea fog cases over the Yellow sea, one spread widely and the other spread narrowly along the coastal area, are studied in detail by a series of numerical experiments with 3DVAR and EnKF based on the Grid-point Statistical Interpolation (GSI) system and the Weather Research and Forecasting (WRF) model. The results show that the assimilation effect of EnKF outperforms that of 3DVAR: for the widespread-fog case, the probability of detection and equitable threat scores of the forecasted sea fog area get improved respectively by ~57.9% and ~55.5%; the sea fog of the other case completely mis-forecasted by 3DVAR is produced successfully by EnKF. These improvements of EnKF relative to 3DVAR are benefited from its flow-dependent background error, resulting in more realistic depiction of sea surface wind for the widespread-fog case and better moisture distribution for the other case in the initial conditions. More importantly, the correlation between temperature and humidity in the background error of EnKF plays a vital role in the response of moisture to the assimilation of temperature, which leads to a great improvement on the initial moisture conditions for sea fog forecast.
COMMUNICATION | doi:10.20944/preprints201706.0074.v1
Subject: Chemistry, Medicinal Chemistry Keywords: deep-sea; actinomycete; Microbacterium sp.; indole
Online: 16 June 2017 (04:40:54 CEST)
A novel indole, microindolinone A (1), was isolated from a deep-sea-derived actinomycete Microbacterium sp. MCCC 1A11207, together with 18 known compounds (2–19). By detailed analysis of the 1H, 13C, HSQC, COSY, HMBC, HRESIMS, and CD data, the absolute configuration of 1 was elucidated as 5R-hydroxy-4,5,6,7-tetrahydroindole-4-one. Noteworthily, 1 is the second example of a saturated indole isolated from nature.
TECHNICAL NOTE | doi:10.20944/preprints202208.0506.v1
Online: 30 August 2022 (04:44:08 CEST)
Sea ice roughness can serve as a proxy for other sea ice characteristics such as ice thickness and ice age. Arctic-wide maps that represent spatial patterns of sea ice roughness can be used to better characterize spatial patterns of ice convergence and divergence processes. Sea ice surface roughness can also control and quantify turbulent exchange between sea ice surface and atmosphere and therefore influence surface energy balance at the basin scale. We have developed a data processing system that produces georeferenced sea ice roughness rasters that can be mosaicked to produce Arctic-wide maps of sea ice roughness. This approach starts with Top-of-Atmosphere radiance data from the Multi-angle Imaging SpectroRadiometer (MISR). We used red-band angular data from three MISR cameras (Ca, Cf, An). We created a training data set in which MISR pixels were matched with co-located and concurrent lidar-derived roughness measurements from the Airborne Topographic Mapper (ATM). We used a K-nearest neighbor algorithm with the training data to calibrate the multi-angle data to values of surface roughness and then applied the algorithm to Arctic-wide MISR data for two 16-day periods in April (spring) and July (summer). After georeferencing the roughness rasters, we then mosaicked each 16-day roughness dataset to produce Arctic-wide maps of sea ice roughness for spring and summer. Assessment of the results shows good agreement with independent ATM roughness data, not used in model development. A preliminary exploration of spatial and seasonal changes in sea ice roughness for two locations shows the ability to characterize the roughness of different ice types and the results align with previous studies. This processing system and its data products can help the sea ice research community to gain insights into the seasonal and interannual changes in sea ice roughness over the Arctic.
ARTICLE | doi:10.20944/preprints202112.0511.v1
Subject: Mathematics & Computer Science, Information Technology & Data Management Keywords: real sea surface; object detection; performance detection
Online: 31 December 2021 (11:16:15 CET)
The video images captured at long range usually have low contrast floating objects of interest on a sea surface. A comparative experimental study of the statistical characteristics of reflections from floating objects and from the agitated sea surface showed the difference in the correlation and spectral characteristics of these reflections. The functioning of the recently proposed modified matched subspace detector (MMSD) is based on the separation of the observed data spectrum on two subspaces: relatively low and relatively high frequencies. In the literature the MMSD performance has been evaluated in generally and moreover using only a sea model (additive Gaussian background clutter). This paper extends the performance evaluating methodology for low contrast object detection and moreover using only the real sea dataset. This methodology assumes an object of low contrast if the mean and variance of the object and the surrounding background are the same. The paper assumes that the energy spectrum of the object and the sea are different. The paper investigates a scenario in which an artificially created model of a floating object with specified statistical parameters is placed on the surface of a real sea image. The paper compares the efficiency of the classical Matched Subspace Detector (MSD) and MMSD for detecting low-contrast objects on the sea surface. The article analyzes the dependence of the detection probability at a fixed false alarm probability on the difference between the statistical means and variances of a floating object and the surrounding sea.
ARTICLE | doi:10.20944/preprints202102.0036.v1
Subject: Earth Sciences, Atmospheric Science Keywords: alkalinity; carbon; coast; Wadden Sea; German Bight
Online: 1 February 2021 (13:52:55 CET)
High alkalinity values on the seaside can influence the exchange of carbon dioxide between seawater and the atmosphere. Still, there are many uncertainties about biogeochemical processes responsible for alkalinity generation in the coastal area. One example of coastal areas with high alkalinity is the German Bight. The German Bight is the south-east part of the North Sea. The literature suggests that high summer alkalinity values in the German Bight result from the exchange of the German Bight with the Wadden Sea (an intertidal zone along Dutch, German, and Danish coasts). We show that the origin of high alkalinity values in the German Bight can be sulfate reduction in sediments of the Wadden Sea and that it can increase alkalinity from March to August up to approximately 220 micromoles per liter. Also, we show that sulfate reduction does not cause any significant year alkalinity flux from the Wadden Sea to the German Bight; instead, nitrogen compounds ( and ) are responsible for it and cause an alkalinity flux about 13 GM a year from the Wadden Sea to the German Bight.
ARTICLE | doi:10.20944/preprints202005.0336.v1
Online: 21 May 2020 (05:59:34 CEST)
In this paper, we focus on developing a novel method to extract sea ice cover (i.e., discrimination/classification of sea ice and open water) using Sentinel-1 (S1) cross-polarization (vertical-horizontal, VH or horizontal-vertical, HV) data in extra wide (EW) swath mode based on the machine learning algorithm support vector machine (SVM). The classification basis includes the S1 radar backscatter coefficients and texture features that are calculated from S1 data using the gray level co-occurrence matrix (GLCM). Different from previous methods where appropriate samples are manually selected to train the SVM to classify sea ice and open water, we proposed a method of unsupervised generation of the training samples based on two GLCM texture features, i.e. entropy and homogeneity, that have contrasting characteristics on sea ice and open water. We eliminate the most uncertainty of selecting training samples in machine learning and achieve automatic classification of sea ice and open water by using S1 EW data. The comparison shows good agreement between the SAR-derived sea ice cover using the proposed method and a visual inspection, of which the accuracy reaches approximately 90% - 95% based on a few cases. Besides this, compared with the analyzed sea ice cover data Ice Mapping System (IMS) based on 728 S1 EW images, the accuracy of extracted sea ice cover by using S1 data is more than 80%.
ARTICLE | doi:10.20944/preprints201707.0066.v1
Subject: Earth Sciences, Oceanography Keywords: spatial precision; sea surface temperature; VIIRS; AVHRR
Online: 24 July 2017 (12:15:05 CEST)
The primary measure of the quality of sea surface temperature (SST) fields obtained from satellite-borne infrared sensors has been the bias and variance of matchups with co-located in-situ values. Because such matchups tend to be widely separated, these bias and variance estimates are not necessarily a good measure of small scale (several pixels) gradients in these fields because one of the primary contributors to the uncertainty in satellite retrievals is atmospheric contamination, which tends to have large spatial scales compared with the pixel separation of infrared sensors. Hence, there is not a good measure to use in selecting SST fields appropriate for the study of submesoscale processes and, in particular, of processes associated with near-surface fronts, both of which have recently seen a rapid increase in interest. In this study, two methods are examined to address this problem, one based on spectra of the SST data and the other on their variograms. To evaluate the methods, instrument noise was estimated in Level-2 VIIRS and AVHRR SST fields of the Sargasso Sea. The two methods provided very nearly identical results for AVHRR: along-scan values of approximately 0.18 K for both day and night and along-track values of 0.21 K also for day and night. By contrast, the instrument noise estimated for VIIRS varied by method, scan geometry and day-night. Specifically, daytime, along-scan (along-track), spectral estimates were found to be approximately 0.05 K (0.08 K) and the corresponding nighttime values of 0.02 K (0.03 K). Daytime estimates based on the variogram were found to be 0.08 K (0.10 K) with the corresponding nighttime values of 0.04 K (0.06 K). Taken together: AVHRR instrument noise is significantly larger than VIIRS instrument noise, along-track noise is larger than along-scan noise and daytime levels are higher than nighttime levels. Given the similarity of results and the less stringent preprocessing requirements, the variogram is the preferred method although there is a suggestion that this approach overestimates the noise for high quality data in dynamically quiet regions. Finally, simulations of the impact of noise on the determination of SST gradients show that on average the gradient magnitude for typical ocean gradients will be accurately estimated with VIIRS but substantially overestimated with AVHRR.
ARTICLE | doi:10.20944/preprints202102.0513.v1
Subject: Earth Sciences, Atmospheric Science Keywords: Sea-Level Rise; GIS; Open-Source Software; Modeling
Online: 23 February 2021 (12:39:09 CET)
Sea-level rise is a problem increasingly affecting coastal areas worldwide. The existence of Free and Open-Source Models to estimate the sea-level impact can contribute to better coastal man-agement. This study aims to develop and to validate two different models to predict the sea-level rise impact supported by Google Earth Engine (GEE) – a cloud-based platform for planetary-scale environmental data analysis. The first model is a Bathtub Model based on the uncertainty of projections of the Sea-level Rise Impact Module of TerrSet - Geospatial Monitoring and Modeling System software. The validation process performed in the Rio Grande do Sul coastal plain (S Brazil) resulted in correlations from 0.75 to 1.00. The second model uses Bruun Rule formula implemented in GEE and is capable to determine the coastline retreat of a profile through the creation of a simple vector line from topo-bathymetric data. The model shows a very high cor-relation (0.97) with a classical Bruun Rule study performed in Aveiro coast (NW Portugal). The GEE platform seems to be an important tool for coastal management. The models developed have been openly shared, enabling the continuous improvement of the code by the scientific commu-nity.
ARTICLE | doi:10.20944/preprints202102.0421.v1
Subject: Earth Sciences, Atmospheric Science Keywords: Sea-Level Rise; GIS; Open-Source Software; Modeling
Online: 18 February 2021 (13:52:49 CET)
Sea-level rise is a problem increasingly affecting coastal areas worldwide. The existence 15 of Free and Open-Source Models to estimate the sea-level impact can contribute to better coastal 16 management. This study aims to develop and to validate two different models to predict the 17 sea-level rise impact supported by Google Earth Engine (GEE) – a cloud-based platform for plan-18 etary-scale environmental data analysis. The first model is a Bathtub Model based on the uncer-19 tainty of projections of the Sea-level Rise Impact Module of TerrSet - Geospatial Monitoring and 20 Modeling System software. The validation process performed in the Rio Grande do Sul coastal 21 plain (S Brazil) resulted in correlations from 0.75 to 1.00. The second model uses Bruun Rule for-22 mula implemented in GEE and is capable to determine the coastline retreat of a profile through the 23 creation of a simple vector line from topo-bathymetric data. The model shows a very high correla-24 tion (0.97) with a classical Bruun Rule study performed in Aveiro coast (NW Portugal). The GEE 25 platform seems to be an important tool for coastal management. The models developed have been 26 openly shared, enabling the continuous improvement of the code by the scientific community.
ARTICLE | doi:10.20944/preprints202101.0477.v1
Subject: Earth Sciences, Atmospheric Science Keywords: Microplastic; harbor; trace metal; Mediterranean Sea; biofilm; bioconcentration
Online: 25 January 2021 (10:46:35 CET)
The Mediterranean Sea is one of the most impacted basin in terms of microplastics pollution. Land-based activities are the major sources of plastic litter to the ocean, with harbors probably representing significant hotspots. In the framework of the SPlasH! project (Stop alle Plastiche in H2O, Interreg Marittimo project), microplastics were sampled in three north-western Mediterranean harbors during summer and winter. In this study, the areal concentrations of microplastics ranged from 5,576 to 379,965 items.km-2. A decreasing gradient was observed from the inner to the outer zones of the studied harbors, pointing out these enclosed systems as hotspots regarding microplastic pollution. During the summer, because of an enhancement of port activities, the areal concentrations of microplastics were higher than in winter. The investigation microplastics size classes distribution in the surface waters revealed that microplastic within a size range between 300 µm and 500 µm were depleted. During this study, we assessed trace metal partitioning (Pb, Fe, Cu, V, Cd and As) between the dissolved phase and biofilm, thus highlighting concentrations within the biofilm two and six orders higher than those in the dissolved phase. This result strongly suggest trace metal bioaccumulation within the biofilm. When trace metal concentrations are normalized over the corresponding surface of microplastics and microplastics, higher values were obtained for microplastics evidencing their enhanced capacities to bioaccumulate contaminants with respect to macroplastics.
ARTICLE | doi:10.20944/preprints202011.0063.v1
Subject: Earth Sciences, Atmospheric Science Keywords: water vapor; local rainstorm; southern Xinjiang; Arabian Sea.
Online: 2 November 2020 (16:20:31 CET)
Based on NCEP FNL 1°*1° analysis data and Xinjiang meteorological bureau area numerical operation prediction, a local precipitation event in southern Xinjiang on June 26 was analyzed, and the results showed that the water vapor involved in this process originated from the northwestern Gangetic Plain and was transported along the Indus River plain and over the northwestern end of the mountains. Driven by the Iranian low-pressure trough, water vapor at 500 hPa was transported across the northwestern end of the Gangdise Mountains, past Georgoli Peak, and northwest over the Kunlun Mountains to arrive in southern Xinjiang.
ARTICLE | doi:10.20944/preprints202010.0547.v1
Subject: Mathematics & Computer Science, Algebra & Number Theory Keywords: Remote sensing; Multisensor systems; Information theory; Sea Ice
Online: 27 October 2020 (11:27:40 CET)
Automatic ice charting can not be achieved using only SAR modalities. It is fundamental to combine information from other remote sensors with different characteristics for more reliable sea ice characterization. In this paper, we employ principal feature analysis (PFA) to select significant information from multimodal remote sensing data. PFA is a simple yet very effective approach that can be applied to several types of data without loss of physical interpretability. Considering that different homogeneous regions require different types of information, we perform the selection patch-wise. Accordingly, by exploiting the spatial information, we increase the robustness and accuracy of PFA.
ARTICLE | doi:10.20944/preprints202010.0171.v1
Subject: Biology, Anatomy & Morphology Keywords: Densovirus; Picornavirus; Nodavirus; Sea Star Wasting Disease; Asteroidea
Online: 8 October 2020 (09:51:04 CEST)
Sea star wasting disease (SSWD) is a condition that has affected asteroids for over 120 years, yet mechanistic understanding of wasting etiology remains elusive. We investigated temporal virome variation in two Pisaster ochraceus specimens that wasted in the absence of external stimuli and two specimens that did not experience SSWD for the duration of our study, and compared viromes of wasting lesion margin tissues to both artificial scar margins and grossly normal tissues over time. Global assembly of all SSWD-affected tissue libraries resulted in 45 viral genome fragments represented in >1 library. Genome fragments mostly matched densoviruses and picornaviruses with fewer matching nodaviruses, narnaviruses and sobemoviruses. Picornavirus-like and densovirus-like genome fragments were most similar to viral genomes recovered in metagenomic study of other marine invertebrates. Read recruitment revealed only 2 picornavirus-like genome fragments that recruited from only SSWD-affected specimens, but neither was unique to wasting lesions. Wasting lesion margin reads recruited to a greater number of viral genotypes (i.e. richness) than did either scar tissue and grossly normal tissue reads. Taken together, these data suggest that no single viral genome fragment was associated with SSWD. Rather, wasting lesion margins may generally support viral proliferation.
ARTICLE | doi:10.20944/preprints202005.0300.v1
Subject: Earth Sciences, Oceanography Keywords: synthetic aperture radar; sea surface wind; neural network
Online: 18 May 2020 (10:50:03 CEST)
In this paper, we presented a method of retrieving sea surface wind speed from Sentinel-1 synthetic aperture radar (SAR) horizontal-horizontal (HH) polarization data in extra-wide mode, which have been extensively acquired over the Arctic for sea ice monitoring. In contrast to the conventional algorithm, i.e., using a geophysical model function (GMF) to retrieve sea surface wind by spaceborne SAR, we introduced an alternative method based on physical model guided neural network. Parameters of SAR normalized radar cross section, incidence angle, and wind direction are used as the inputs of the backward propagation (BP) neural network, and the output is the sea surface wind speed. The network is developed based on more than 11,000 HH-polarized EW images acquired in the marginal ice zone (MIZ) of the Arctic and their collocations with scatterometer measurements. Verification of the neural network based on the testing dataset yields a bias of 0.23 m/s and a root mean square error (RMSE) of 1.25 m/s compared to the scatterometer wind speed. Further comparison of the SAR retrieved sea surface wind speed with independent buoy measurements shows a bias and RMSE of 0.12 m/s and 1.42 m/s, respectively. We also analyzed the uncertainty of retrieval when the wind direction data of a reanalysis model are used as inputs to the neural network. By combining the detected sea ice cover information based on the EW data, one can expect to derive simultaneously sea ice and marine-meteorological parameters by spaceborne SAR in a high spatial resolution in the Arctic.
REVIEW | doi:10.20944/preprints202208.0396.v1
Subject: Biology, Ecology Keywords: non-indigenous species; ballast water; Greek seas; Mediterranean Sea
Online: 23 August 2022 (05:28:17 CEST)
The Greek seas as a part of the Eastern Mediterranean Sea, have been considered as a hotspot for the entrance of non-indigenous species (NIS). Ballast water functions as a major pathway for the spread of NIS in new environments, posing significant threats to both the ecosystems and human health. Nine non-indigenous fish species, originating from the Red Sea, have been introduced to the Greek seas since 1925. Despite the implemented laws for limiting the spread of NIS and the subsequent impacts, current global environmental issues, such as climate change and micro-plastic pollution, could result in a rapid spread and establishment of NIS in hot-spot regions, including the Greek seas. A more systematic use of advanced tools for the systematic monitoring of all NIS in the Mediterranean Sea is necessary.
ARTICLE | doi:10.20944/preprints202208.0319.v1
Subject: Earth Sciences, Oceanography Keywords: annual cyckle; complex EOFs; statistical analysis; South China Sea
Online: 17 August 2022 (10:11:52 CEST)
We present a method to study the interannual variability of the annual cycle. The method consists of first determining the amplitude and phase of segments of 12 monthly means at all spatial points, resulting in one complex number per grid point and per year. The complex fields, once per year, are then subject to a complex EOF (CEOF) analysis. We consider as an example the barotropic stream function in the South China Sea as simulated with an ocean general circulation model across 6 decades of years, driven my realistic (NCEP) weather forcing. We find 3 to 4 to “significant” CEOFs, which account for about 53 to 62% of variance. These CEOFs go with large-scale patterns. Their time coefficients are mostly stationary, but point to some inhomogeneities related to instationarities in the forcing. In particular, the simulation since 1950-1958 deviates from the remainder of the simulation. The first CEOF describes variations in the center of the South China Sea. Its principal component describes a systematic, albeit noisy shift by almost 180o from 1960 to about the year 2000. When overlaid the long-term mean annual mean, the overall change consists of an amplification of the annual cycle in the 1960s and 1990s, whereas In the 1970s, the amplitude was reduced. Phase shifts in the anomaly (given by the CEOFs) have a small effect, because of the dominance of the mean annual cycle. These variations are not related to ENSO variability but may origin in variations of the Southeast monsoon. The second EOF represents strong changes, both in terms of intensity and phase, in the Luzon strait.
TECHNICAL NOTE | doi:10.20944/preprints202202.0341.v1
Subject: Biology, Animal Sciences & Zoology Keywords: Ctenophora; breeding; comb jelly; cultivation; husbandry; protocol; sea walnut
Online: 25 February 2022 (15:26:33 CET)
Ctenophores are marine organisms attracting significant attention from evolutionary, molecular biology and ecological research. Here we describe an easy and affordable set-up to maintain a stable culture of the ctenophore Mnemiopsis leidyi. The challenging delicacy of the lobate ctenophores can be met by monitoring the water quality, providing the right nutrition, and adapting the handling and tank set-up to their fragile gelatinous body plan. Following this protocol allows stable laboratory lines, a continuous supply of embryos for molecular biological studies, and independence from population responses to environmental fluctuations.
ARTICLE | doi:10.20944/preprints202008.0424.v1
Subject: Earth Sciences, Oceanography Keywords: seagrass; fuzzy inference system; modeling; species abundance; Mediterranean Sea
Online: 20 August 2020 (04:39:47 CEST)
A Mamdani-type fuzzy-logic model has been developed to link Mediterranean seagrass abundance to the prevailing environmental conditions. Big Databases, as UNEP-WCMC (seagrass abundance), CMEMS and EMODnet (oceanographic/environmental) and human-impact parameters were utilized for this expert system. Model structure and input parameters were tested according to their capacity to accurately predict seagrass families at specific locations. The optimum FIS comprised of four input variables: water depth, sea surface temperature and nitrates and bottom chlorophyll-a concentration, exhibiting fair accuracy (76%). Results illustrated that Posidoniaceae prefers cool (16-18oC) and low chlorophyll-a presence (< 0.2 mg/m3); Zosteraceae favors cool (16-18oC) and mesotrophic waters (Chl-a > 0.2 mg/m3), but also slightly warmer (18-19.5 oC) with lower Chl-a levels (< 0.2 mg/m3); Cymodoceaceae lives from warm, oligotrophic (19.5-21.0oC and Chl-a < 0.3 mg/m3) to moderately warm mesotrophic sites (18-21.3oC and 0.3 – 0.4 mg/m3 Chl-a). Finally, Hydrocharitaceae thrives in warm Mediterranaean waters (21-23oC) of low chlorophyll-a content (< 0.25 mg/m3). Climate change scenarios showed that Posidoniaceae and Zosteraceae tolerate bathymetric changes, Posidoniaceae and Zosteraceae are mostly affected by sea temperature rise, while Hydrocharitaceae exhibits tolerance in higher sea temperature rise. This FIS could be used by national and regional policy-makers and public authorities.
ARTICLE | doi:10.20944/preprints201912.0234.v1
Online: 18 December 2019 (03:41:18 CET)
Abstract: Many countries around the world suffer from the lack of a sea port directly linked to the rest of the world. Such countries are called "landlocked countries". This leads to Weak competitiveness of their products in the global market, as well as to the high cost of the imports. Africa has the largest share of these countries, with 16 of the 43 landlocked countries around the world. The aim of this paper is to propose a general framework for criteria that can be used to choose between ports in transit countries that can be used for import or export. These criteria are related to the assessment of the sea ports in terms of infrastructure and tariffs. It is also related to transport infrastructure from the transit country to the landlocked country and the level of safety. The study identified nine criteria that could be used to compare between ports in transit countries. Using Full Consistency Method (FUCOM) to evaluate those criteria showed that the number of navigation lines is the most important criteria followed by the port service level.
ARTICLE | doi:10.20944/preprints201706.0104.v1
Subject: Earth Sciences, Environmental Sciences Keywords: sea-level rise; coastal hazard assessment; uncertainty; coastal adaptation
Online: 22 June 2017 (11:41:46 CEST)
Coastal inundation is an increasing problem. Sea-level rise will greatly increase the frequency and depth of inundation, forcing vulnerable communities to adapt. Communities will need to decide when and how to adapt. The process of decision-making along adaptive pathways is now being used internationally to plan for adaptation over time by anticipating decision points in the future however it unfolds. This process requires risk and uncertainty considerations to be transparent in the scenarios used in such planning. We outline a framework for uncertainty identification and management within coastal hazard assessments which recognizes different types of decision and identifies the types of uncertainty that must be accounted for, such as statistical, scenario and deep uncertainty types. We show how coastal-inundation hazard can be mapped and presented in a way that clearly separates sources of uncertainty, so that they are transparent within a dynamic adaptive pathways planning process. Traditional coastal inundation maps show inundated area only. We present maps of inundation depth and frequency which clearly show the degree of exposure, where that exposure occurs, and how much sea-level rise can be tolerated. The new uncertainty framework and mapping techniques can better identify decision points and their expected time range, which provides more useful input to the adaptation process than traditional coastal inundation assessments.
TECHNICAL NOTE | doi:10.20944/preprints202112.0250.v1
Subject: Earth Sciences, Oceanography Keywords: regional sea level; satellite altimetry; tide gauge; validation; mission bias; North Sea; Sentinel-3A; Jason-1; Jason-2; Jason-3; Envisat; Saral
Online: 15 December 2021 (09:25:54 CET)
Consistent calibration and monitoring is a basic prerequisite for providing reliable time series of global and regional sea level variations from altimetry. The precision of sea level measurements and regional biases for six altimeter missions (Jason-1/2/3, Envisat, Saral, Sentinel-3A) is assessed at eleven GNSS-controlled tide gauge stations in the German Bight (SE North Sea) for the period 2002 to 2019. The gauges are partly located at the open water, partly at the coast close to mudflats. The altimetry is extracted at virtual stations with distances from 2 to 24 km from the gauges. The processing is optimized for the region and adjusted for the comparison with instantaneous tide gauges readings. An empirical correction is developed to account for mean height gradients and slight differences of the tidal dynamics between gauge and altimetry which improves the agreement between the two data sets by 15-75%. The precision of the altimeters is depending on location and mission and is shown to be at least 1.8 to 3.7 cm based on an assumed precision of 2 cm for the gauges. The accuracy of the regional mission biases is strongly dependent on the mean sea surface heights near the stations. The most consistent biases are obtained based on the CLS2011 model with mission dependent accuracies from 1.3 to 3.4 cm. Hence, the GNSS-controlled tide gauges operated operationally by WSV might complement the calibration and monitoring activities at dedicated CalVal stations.
ARTICLE | doi:10.20944/preprints202203.0004.v2
Subject: Earth Sciences, Oceanography Keywords: sea ice; Cryosphere; Arctic Ocean; Arctic sea ice change; Arctic climate change; remote sensing retrieval; satellite remote sensing; APP; APP-x; trend study
Online: 28 March 2022 (04:13:23 CEST)
Arctic sea ice characteristics have been changing rapidly and significantly in the last few decades. Using a long-term time series of sea ice products from satellite observations - the extended AVHRR Polar Pathfinder (APP-x), trends in sea ice concentration, ice extent, ice thickness, and ice volume in the Arctic from 1982 to 2020 are investigated. Results show that the Arctic has become less ice-covered in all seasons, especially in summer and autumn. Arctic sea ice thickness has been decreasing at the rate of -3.24 cm per year, resulting in about a 52% reduction in thickness from 2.35 m in 1982 to 1.13 m in 2020. Arctic sea ice volume has been decreasing at the rate of -467.7 km3 per year, resulting in about a 63% reduction in volume, from 27590.4 km3 in 1982 to 10305.5 km3 in 2020. These trends are further examined from a new perspective, where the Arctic Ocean is classified into open water, perennial, and seasonal sea ice-covered areas based on the sea ice persistence. The loss of the perennial sea ice-covered area is the major factor in the total sea ice loss in all seasons. If the current rates of sea ice changes in extent, concentration, and thickness continue, the Arctic is expected to have ice-free summer by the early 2060s.
ARTICLE | doi:10.20944/preprints202205.0013.v1
Subject: Physical Sciences, Acoustics Keywords: sea water; bubbles; plankton; sound scattering; sound attenuation; acoustic spectroscopy
Online: 4 May 2022 (14:16:08 CEST)
The presence of bubbles near the sea surface under certain conditions leads to abnormal sound scattering and a significant change in the acoustic properties of the upper layer of the sea. The article presents some results of sound scattering studies under various sea conditions, up to stormy conditions, when extensive bubble clouds arise. By the method of unsteady acoustic spectroscopy, data on the size distribution of bubbles at various depths have been obtained, which can be described by a power function with exponential decay at small bubble sizes of the order of 10 microns. Estimates of the gas content in bubble clouds and their influence on the acoustic characteristics of the upper layer of the sea have been carried out. It is shown that at sufficiently high concentrations, sharp increases in absorption and dispersion of the sound velocity are observed. Modeling of sound propagation in the presence of a quasi-homogeneous bubble layer shows that it leads both to a change in the laws of the average decay of the sound field along the sound propagation path and to a change in the shallow spatial structure of the field.
ARTICLE | doi:10.20944/preprints202202.0260.v1
Subject: Earth Sciences, Oceanography Keywords: sea surface salinity; sampling mismatch; sub footprint variability; uncertainty; validation
Online: 22 February 2022 (02:44:05 CET)
Validation of satellite sea surface salinity (SSS) products is typically based on comparisons with in-situ measurements at a few meters depth, that are mostly done at a single location and time. The difference in term of spatio-temporal resolution between the in-situ near-surface salinity and the two-dimensional satellite SSS results in a sampling mismatch uncertainty. The Climate Change Initiative (CCI) project has merged SSS from three satellite missions. Using an optimal interpolation, weekly and monthly SSS and their uncertainties are estimated at a 50 km spatial resolution over the global ocean. Over the 2016-2018 period the mean uncertainty on weekly CCI SSS is 0.13, whereas the standard deviation of weekly CCI minus in-situ Argo salinities is 0.24. Using high resolution SSS simulations, we estimate the expected uncertainty due to the CCI versus Argo sampling mismatch. Most of the largest spatial variability of the satellite minus Argo salinity are observed in regions with large mismatch. A quantitative validation is performed by considering the statistical distribution of the CCI minus Argo salinity normalized by the sampling and retrieval uncertainties. This quantity should follow a Gaussian distribution with a standard deviation of 1, if all uncertainty contributions are properly considered. We find that 1) the sampling mismatch can explain most of the observed differences between Argo and CCI data, especially for monthly products and in dynamical regions (river plumes, fronts), 2) overall, the uncertainties are well estimated in CCI version 3, much better compared to CCI version 2. There are a few dynamical regions where discrepancies remain, and where the satellite SSS, their associated uncertainties and the sampling mismatch estimates should be further validated.
ARTICLE | doi:10.20944/preprints202012.0649.v1
Subject: Biology, Anatomy & Morphology Keywords: Ophiura sarsii; the Barents Sea; brittle stars; barcoding; COI gene
Online: 25 December 2020 (10:24:23 CET)
Ophiura sarsii is a common brittle star species across Arctic and subarctic regions of Atlantic and Pacific oceans. In the Barents Sea O. sarsii is among the dominant echinoderms. We studied genetic diversity of O. sarsii by sequencing the 548 bp fragment of mitochondrial COI gene. O.sarsii demonstrated high genetic diversity in the Barents Sea. Both major Atlantic mtDNA lineages were present in the Barents Sea and were evenly distributed between the northern waters around Svalbard archipelago and the southern part near Murmansk coast of Kola Peninsula. Both regions, as well as other parts of the O.sarsii range, were characterized by high haplotype diversity with a significant number of private haplotypes, being mostly satellites to the two dominant haplotypes, each belonging to a different mtDNA clade. Demographic analyses indicated that the demographic and spatial expansion of Ophiura sarsii in the Barents Sea most plausibly has started during the Bølling–Allerød interstadial, during the deglaciation of the western margin of the Barents Sea.
ARTICLE | doi:10.20944/preprints202009.0126.v1
Subject: Materials Science, General Materials Science Keywords: calcium oxide; calcium hydroxide; kinetics; lime; magnesium hydroxide; sea water
Online: 5 September 2020 (07:49:12 CEST)
The reaction kinetics of burnt lime (CaO) in contact with sea water has been elucidated and compared to its behaviour in fresh water. In the first minutes of contact between burnt lime and water, it "slaked" as CaO reacted with water to yield calcium hydroxide (Ca(OH)2). Subsequently, calcium hydroxide reacted with magnesium, sulphate and carbonate from the sea water to yield magnesium hydroxide (Mg(OH)2), calcium sulphate dihydrate (gypsum, CaSO4·2H2O) and calcium carbonate (CaCO3), respectively. In a closed system of 1% CaO in natural sea water (where the supply of sulphate, magnesium and carbonate is limited), more than 90% reacted within the first 5 hours. It is foreseen that in an open system, like a marine fjord, it will react even faster. The pH 8 of sea water close to the CaO particle surface will immediately increase to a theoretical value of about 12.5 but will, in an open system with large excess of sea water, rapidly fall back to pH 10.5 being equilibrium pH of magnesium hydroxide. This is further reduced to < 9 due to the common ion effect of dissolved magnesium in sea water and then be diluted to the sea water background pH, about 8. Field test dosing CaO particles to sea water showed that the pH of water between the particles stayed around 8.
COMMUNICATION | doi:10.20944/preprints202008.0465.v1
Subject: Biology, Animal Sciences & Zoology Keywords: Red ants; Ex-situ; Conservation; Hatchery; Sea turtles; Lepidochelys olivacea
Online: 20 August 2020 (13:20:44 CEST)
Abstract: Predation of eggs and emerging hatchlings of olive ridley turtle (Lepidochelys olivacea) by wild animals and feral dogs are known. They reduce the hatching success rate considerably affecting the conservation management of this vulnerable species. Hatchery management is practised in India to overcome predation. Ant predation is a serious threat to turtle nest protected by ex situ or in situ erected hatchery. This article reports the first direct evidence of turtle eggs predation by Dorylus orientalis Westwood, 1835 commonly called red ants. Native to India, Oriental, Indo Australian and Palearctic regions they are notorious as an agricultural pest. Chlorpyrifos pesticides recommended for their control could become fatal for the developing embryos of turtles if applied near the hatchery. In the turtle nesting site of the west coast of India, D. orientalis has more of an ecological role than as a pest. Natural pesticide such as Neem powder (Azadirachta indica) shows promising results for preventing their infestation.
ARTICLE | doi:10.20944/preprints202007.0164.v1
Subject: Engineering, Civil Engineering Keywords: wave overtopping; coastal safety; flow velocity; flow depth; sea dikes
Online: 9 July 2020 (02:01:46 CEST)
Design criteria for coastal defenses exposed to wave overtopping are usually assessed by mean overtopping discharges and maximum individual overtopping volumes. However, it is often difficult to give clear and precise limits of tolerable overtopping for all kind of layouts. A few studies analyzed the relationship between wave overtopping flows and hazard levels for people on sea dikes, confirming that one single value of admissible mean discharge or individual overtopping volume is not a sufficient indicator of the hazard, but detailed characterization of flow velocities and depths is required. This work presents the results of an experimental campaign aiming at characterizing the flow characteristics associated to maximum individual overtopping volumes for an urbanized stretch of a town along the Catalan coast, where a walking and bike path and a railway run along the coastline are exposed to significant overtopping events every stormy season. The work compares different safety criteria for pedestrian. Results prove that safety of pedestrian on a sea dike can be still guaranteed even for overtopping volumes larger than 1000 l/m. Pedestrian hazard is rather proved to be linked to the combination of overtopping flow velocity and flow depth.
ARTICLE | doi:10.20944/preprints201904.0276.v1
Subject: Earth Sciences, Oceanography Keywords: copepoda; secondary production; mortality rates; Baltic sea; gulf of Gdańsk
Online: 25 April 2019 (08:05:58 CEST)
The main objective of this paper was description of seasonal and interannual trends in secondary production and mortality rates of the three most important Copepoda taxa in the Gulf of Gdańsk (southern Baltic Sea). Samples were collected monthly from 6 stations located in the western part of the Gulf of Gdańsk during three research periods: 1998-2000, 2006-2007 and 2010-2012. Production was computed basing on copepod biomass and mortality rates estimated according to vertical life table approach. Redundancy analysis was used to investigate relationship between secondary production and environmental conditions. Considering the entire research period there was significant interannual and seasonal variability of secondary production, mortality rate as well as abundance and biomass anomalies. Conducted analysis revealed correlation between increasing temperature and production of Acartia spp. and T.longicornis developmental stages, while older copepodites of P.acuspes showed almost negative correlation with temperature. The mortality rate estimations obtained for Acartia spp. Were highest in summer, while for T.longicornis peak was usually noted in spring-summer period. Lowest mortality rate estimations were noted in autumn and winter for almost all stages of investigated taxa.
ARTICLE | doi:10.20944/preprints201902.0185.v1
Subject: Earth Sciences, Oceanography Keywords: C-band SAR; sea surface wind speed retrieval; full polarimetry
Online: 20 February 2019 (09:07:35 CET)
In this paper, sea surface wind speed (SSWS) retrieval from Gaofen-3 (GF-3) quad-polarization stripmap (QPS) data in vertical-vertical (VV), horizontal-horizontal (HH) and vertical-horizontal (VH) polarizations is investigated in detail based on 3,170 scenes acquired from October 2016 to May 2018. The radiometric calibration factor of the VV polarization data is examined first. This calibration factor generally meets the requirement of SSWS retrieval accuracy with an absolute bias of less than 0.5 m/s but shows highly dispersed characteristics. These results lead to SSWS retrievals with a small bias of 0.18 m/s but a rather high root mean square error (RMSE) of 2.36 m/s compared with the ERA-Interim reanalysis model data. Two refitted polarization ratio (PR) models for the QPS HH polarization data are presented. Based on a combination of the incidence angle- and azimuth angle-dependent PR model and CMOD5.N, the SSWS derived from the QPS HH data shows a bias of 0.07 m/s and an RMSE of 2.26 m/s relative to the ERA-Interim reanalysis model wind speed. A linear function relating SSWS and the normalized radar cross section (NRCS) of QPS VH data is derived. The SSWS data retrieved from the QPS VH data show good agreement with the WindSat SSWS data, with a bias of 0.1 m/s and an RMSE of 2.02 m/s. We also apply the linear function to the GF-3 Wide ScanSAR data acquired for the typhoon SOULIK, which surprisingly yields a very good agreement with the model results. A comparison of SSWS retrievals among three different polarization datasets is also presented. The current study and our previous work demonstrate that the general accuracy of the SSWS retrieval based on GF-3 QPS data has an absolute bias of less than 0.3 m/s and an RMSE of 2.0 ±0.2 m/s relative to various datasets. Further improvement will depend on dedicated radiometric calibration efforts.
ARTICLE | doi:10.20944/preprints201810.0113.v1
Subject: Chemistry, Food Chemistry Keywords: Sea Squirts; Metabolites; GC-MS; Anti-bacterial; Zika vector; larvicidal
Online: 6 October 2018 (11:18:31 CEST)
In this present study, we conducted untargeted metabolic profiling using Gas Chromatography-Mass Spectrometry (GC-MS) analysis of ascidian Didemnum bistratum to assess the chemical constituents by searching in NIST library with promising biological properties against anti-bacterial and Zika virus vector mosquitocidal Properties. Metabolites, steroids and fatty acids are abundant in crude compounds of ascidian D. bistratum and showed potential zone growth inhibition against bacterial strains Kluyvera ascorbate (10 mm). The active crude compounds of D. bistratum exhibited prominent larvicidal activity against the Zika vector mosquitoes of Aedes aegypti and Cluex quinquefasciatus (LC50 values of 0.4436 to 2.23 mg/mL). The findings of this study provide a first evidence of the biological properties exhibited by D. bistratum extracts, thus increasing the knowledge about the Zika virus vector mosquitocidal properties of ascidian. Overall, ascidian D. bistratum are promising and biocontrol or eco-friendly tool against A. aegypti and C. quinquefasciatus with prospective toxicity against non-target organisms.
ARTICLE | doi:10.20944/preprints202111.0469.v1
Subject: Earth Sciences, Atmospheric Science Keywords: land-sea contrast; topography; propagating convective system; early morning convection; Java
Online: 25 November 2021 (11:00:57 CET)
The movement direction of propagating convective systems originating from both inland and offshore over the north coast of West Java in Indonesia is determined primarily by the prevailing wind. However, the role of a land-sea contrast and a rugged topography over southern West Java is also expected to affect propagating convective systems by increasing land-sea breezes and enhancing upward motion. These hypotheses are tested using a weather prediction model incorporating convection (up to 3 km height) to simulate the heavy rainfall event during 26–29 January associated with the 2002 Jakarta flood. First, we addressed the influence of land-sea contrast and topography on the local circulation, particularly in the area surrounding Jakarta, by replacing the inland topography over western Indonesia (96°–119°E, 17°S–0°) with a water body with an altitude of 0 m. We then compared the results of model simulations with and without topography. The results show that the main role of the topography here is enhancing the upward motion and generating a deep convective cloud in response to the land-based convective system during 26–27 January 2002, which then continuously and rapidly propagates offshore due to the cold pool mechanism. Furthermore, the land-sea contrast has a significant role in increasing sea breeze under the rapidness of the landward propagation system during 28–29 January 2002, which was strengthened by the gravity waves and resulted in early morning convection over coastal regions.
ARTICLE | doi:10.20944/preprints202108.0261.v1
Subject: Earth Sciences, Atmospheric Science Keywords: sea ice; atmospheric circulation; Rossby waves; climate changes; Arctic; numerical modeling
Online: 11 August 2021 (13:17:14 CEST)
The amplified Arctic warming is one of several factors influencing atmospheric dynamics. In this work, we consider a series of numerical experiments to identify the direct role of the Arctic sea ice reduction process in forming climatic trends in the northern hemisphere. Aimed at this, we used two more or less independent mechanisms of ice reduction. The first is traditionally associated with increasing the concentration of carbon dioxide in the atmosphere from the historic level of 360 ppm to 450 ppm and 600 ppm. This growth increases air temperature and decreases the ice volume. The second mechanism is associated with a reduction in the reflectivity of ice and snow. We assume that comparing the results of these two experiments allows us to judge the direct role of ice reduction. The most prominent consequences of ice reduction, as a result, were the weakening of temperature gradient at the tropopause level in mid-latitudes, the slower zonal wind at 50-60∘N, intensification of wave activity in Europe, Western America, and Chukotka, and its weakening in the south of Siberia and Kazakhstan. We also consider how climate change may alter regimes such as blocking and stationary Rossby waves. The study used the INM-CM48 climate system model .
Subject: Biology, Anatomy & Morphology Keywords: Fish size; otolith shape; head side; Sargocentron spiniferum; Red Sea; asymmetry
Online: 26 July 2021 (10:55:07 CEST)
Otolith morphology analysis is one of the main tools used for fish or fish stock identification. Moreover, otolith shape can also be used in fish dietary studies (stomach content) for the identi-fication of prey fishes and their size according to the relationship between fish and otolith sizes. In the present study, the relationship between fish length and otolith morphological dimensions was investigated for the sabre squirrelfish, Sargocentron spiniferum (Forsskål, 1775) (family: Hol-ocentridae). Samples of 185 fish were collected from the coast of the Red Sea, Egypt. To analyze the relationship between fish and otolith, otolith morphometric measurements (length, width, area, perimeter, weight, sulcus, and ostium) and shape factors (aspect ratio, compactness, form factor, rectangularity, roundness, ellipticity, squareness) describing outline shape were extracted using image analysis. Generalized linear models were applied for the relationship between body length and each otolith morphology feature. From the relationships between the total length of fish and fourteen morphology features, only otolith length, caudal length, and squareness were significantly correlated with fish size. Our results provide more information for the relationship between fish length and otolith morphometric features.
ARTICLE | doi:10.20944/preprints202104.0092.v1
Subject: Biology, Anatomy & Morphology Keywords: Fish size; otolith shape; head side; Sargocentron spiniferum; Red Sea; Egypt
Online: 5 April 2021 (10:26:13 CEST)
Otolith morphology analysis is one of the main tools used for fish or fish stock identification. Moreover, otolith shape can also be used in fish dietary studies (stomach content) for the identification of prey fishes and their size according to the relationship between fish and otolith sizes. In the present study, the relationship between fish length and otolith morphological dimensions was investigated for the sabre squirrelfish, Sargocentron spiniferum (Forsskål, 1775) (family: Holocentridae). Samples of 185 fish were collected from the coast of the Red Sea, Egypt. To analyze the relationship between fish and otolith, otolith morphometric measurements (length, width, area, perimeter, weight, sulcus, and ostium) and shape factors (aspect ratio, compactness, form factor, rectangularity, roundness, ellipticity, squareness) describing outline shape were extracted using image analysis. Generalized linear models were applied for the relationship between body length and each otolith morphology feature. From the relationships between the total length of fish and fourteen morphology features, only otolith length, caudal length, and squareness were significantly correlated with fish size. Our results provide more information for the relationship between fish length and otolith morphometric features.
ARTICLE | doi:10.20944/preprints202102.0235.v1
Subject: Life Sciences, Biochemistry Keywords: Sea turtles; tumour; fibropapillomatosis; Chelonid alphaherpesvirus 5; Chelonia mydas papillomavirus 1
Online: 9 February 2021 (11:07:04 CET)
Characterised by the growth of benign tumours, fibropapillomatosis (FP) is a debilitating disease that predominantly afflicts the endangered green turtle (Chelonia mydas). A growing body of histological and molecular evidence has consistently associated FP tumours with Chelonid alphaherpesvirus 5 (ChHV5), leading this virus to be considered the most likely aetiological agent of FP. However, a recent study which detected both ChHV5 and Chelonia mydas papillomavirus 1 (CmPV1) DNA in FP tumour tissues has challenged this hypothesis. The present study aimed to establish the wider prevalence of CmPV1 and co-occurrence with ChHV5 in marine turtles in waters adjacent to the east coast of Queensland, Australia. This comprehensive molecular survey screened a total of 353 samples from 275 foraging turtles using probe-based qPCR. Three sample categories were used in this study: Group A (FP tumours), Group B (non-tumoured skin from turtles with FP tumours) and Group C (non-tumoured skin from turtles without FP tumours). Concurrent detection of ChHV5 and CmPV1 DNA is reported for all three categories, with the highest rate of concurrent detection reported for Group A samples (43.5%). Collectively, these results pivot the way we think about FP; as an infectious disease where two separate viruses may be at play.
ARTICLE | doi:10.20944/preprints202007.0495.v1
Subject: Chemistry, Medicinal Chemistry Keywords: In silico target prediction; dihydrochalcones; SEA; SwissTargetPrediction; SuperPred; polyphamracology; virtual screening
Online: 21 July 2020 (13:43:40 CEST)
Natural products comprise a rich reservoir for innovative drug leads and are a constant source of bioactive compounds. To find pharmacological targets for new or already known natural products using modern computer-aided methods is a current endeavor in drug discovery. Nature’s treasures, however, could be used more effectively. Yet, reliable pipelines for large scale target prediction of natural products are still rare. We have developed an in silico workflow consisting of four independent, stand-alone target prediction tools and evaluated its performance on dihydrochalcones (DHCs) – a well-known class of natural products. Thereby, we revealed four previously unreported protein targets for DHCs, namely 5-lipoxygenase, cyclooxygenase-1, 17β- hydroxysteroid dehydrogenase 3, and aldo-keto reductase 1C3. Moreover, we provide a thorough strategy on how to perform computational target prediction and guidance on using the respective tools.
ARTICLE | doi:10.20944/preprints201909.0157.v1
Subject: Biology, Other Keywords: schistosomiasis; monophosphoryl lipid A (MPLA); chemotherapy; oxidative stress; antioxidant enzymes; SEA
Online: 16 September 2019 (01:27:58 CEST)
Schistosomiasis, a crippling ailment that afflicts over 220 million people worldwide. Yet or up till now, there is no vaccine for schistosomiasis, and chemotherapy relies heavily on a single drug, the praziquantel. The present study was undertaken to investigate the therapeutic effect of Monophosphoryl Lipid A (MPLA) as an adjuvant in soluble egg antigen (SEA) vaccinated mice against the deleterious pathological impacts induced in hepatic tissues of mice by Schistosoma mansoni infection. In addition, to study the associated parasitological, immunological and biochemical parameters. Parasitological parameters showed that intraperitoneal injection of MPLA into SEA-vaccinated and S. mansoni-infected mice was effective to a significant degree in reducing the worm and egg burden, granuloma count and diameter as well as the total area of infection in their livers versus SEA-untreated but infected ones. In addition, MPLA showed ameliorative action on the elevated liver oxidative stress marker, including malondialdehyde (MDA) and decrease in the level of the antioxidant enzymes, reduced glutathione (GSH) and catalase (CAT) which may have a role in the liver damage and fibrosis due to S. mansoni infection. In conclusion, treatment with MPLA has multi-functions in attenuating the deleterious impacts of S. mansoni infection in mice livers. Its effects are mediated through a reduction of ova count, worm burden, granuloma diameter and amelioration of antioxidant defense systems, and liver function biomarkers.
REVIEW | doi:10.20944/preprints201908.0018.v1
Subject: Earth Sciences, Geophysics Keywords: glacial isostatic adjustment; sea level change; fingerprints of past ice melting
Online: 2 August 2019 (08:45:05 CEST)
Along with density and mass variations of the oceans driven by global warming, Glacial Isostatic Adjustment (GIA) in response to the last deglaciation still contributes significantly to present-day sea-level change. Indeed, in order to reveal the impacts of climate change, long term observations at tide gauges and recent absolute altimetry data need to be decontaminated from the effects of GIA. This is now realized by means of global models constrained by the observed evolution of the paleo-shorelines since the Last Glacial Maximum, which account for the complex interactions between the solid Earth, the cryosphere and the oceans. In the recent literature, past and present-day effects of GIA are often expressed in terms of fingerprints describing the spatial variations of several geodetic quantities like crustal deformation, the harmonic components of the Earth's gravity field, relative and absolute sea level. However, since it is driven by the sluggish readjustment occurring within the viscous mantle, GIA shall taint the pattern of sea-level variability also during the forthcoming centuries. The shapes of the GIA fingerprints reflect inextricable deformational, gravitational, and rotational interactions occurring within the Earth system. Using up-to-date numerical modeling tools, our purpose is to revisit and to explore some of the physical and geometrical features of the fingerprints, their symmetries and intercorrelations, also illustrating how they stem from the fundamental equation that governs GIA, i.e., the Sea Level Equation.
ARTICLE | doi:10.20944/preprints201807.0550.v1
Subject: Chemistry, Food Chemistry Keywords: Mercury, Pelagic Fish, Direct Mercury Analyzer, Mediterranean Sea, Tolerable Weekly Intake
Online: 27 July 2018 (17:23:58 CEST)
Mercury (Hg) fish and seafood contamination is a global concern and needs worldwide sea investigations in order to protect consumers. The aim of this study was to investigate the Hg concentration by means of a rapid and simple analytical technique with direct Mercury Analyzer (DMA-80) in pelagic fish species, Tetrapturus belone (spearfish), Thunnus thynnus (tuna) and Xiphias gladius (swordfish) caught in the Mediterranean Sea. Hg contents were evaluated also in Salmo salar (salmon) as pelagic fish not belonging to the Mediterranean area. The results obtained were variable ranging between 0,015-2,562 mg kg-1 for T. thynnus specie, 0,477-3,182 mg kg-1 for X. gladius, 0,434-1,730 mg kg-1 for T. belone and 0,004-0,019 mg kg-1 for S. salar, respectively. The total Hg tolerable weekly intake (TWI) and % tolerable weekly intake (TWI%) values according to the European Food Safety Authority (EFSA) were calculated. The results highlighted that the pelagic species caught in the Mediterranean Sea should be constantly monitored due to their high Hg contents as well as their TWI and TWI% with respect to S. salar samples.
ARTICLE | doi:10.20944/preprints201711.0159.v1
Subject: Earth Sciences, Atmospheric Science Keywords: atmospheric mercury; Baltic Sea; mapping of TGM levels; long range transport
Online: 24 November 2017 (09:00:15 CET)
Mercury is a toxic pollutant emitted from both natural sources and through human activities. A global interest in atmospheric mercury has risen ever since the discovery of the Minamata disease in 1956. Properties of gaseous elemental mercury enable long range transport which can cause pollution even in pristine environments. Total gaseous mercury (TGM) was measured from winter 2016 to spring 2017 over the Baltic Sea. A Tekran 2357A mercury analyser was installed aboard the research and icebreaking vessel Oden for the purpose of continuous measurements of gaseous mercury in ambient air. Measurements were performed during a campaign along the Swedish east coast and in the Bothnian Bay near Lulea during the icebreaking season. Data was evaluated from Gothenburg using a plotting software and back trajectories for air masses were calculated. The TGM average of 1.365 ± 0.054 ng/m3 during winter and 1.288 ± 0.140 ng/m3 during spring was calculated as well as a total average of 1.362 ± 0.158 ng/m3. Back trajectories showed a possible correlation of anthropogenic sources elevating the mercury background level in some areas. There were also indications of depleted air, i.e., air with lower concentrations than average, being transported from the Arctic to northern Sweden resulting in a drop in TGM levels.
ARTICLE | doi:10.20944/preprints202104.0349.v1
Subject: Earth Sciences, Atmospheric Science Keywords: Sea level changes; Luminescence dating; coastal archaeology; landscape reconstruction; Bronze age; Crete
Online: 13 April 2021 (11:42:17 CEST)
Understanding the processes that govern the transformation of the landscape through time is essential for exploring the evolution of a coastal area. Coastal landscapes are dynamic sites, with their evolution strongly linked with waves and sea-level variations. Geomorphological features in the coastal area, such as beachrock formations and dune fields, can function as indicators of the coastal landscape evolution through time. However, our knowledge of the chronological framework of coastal deposits on the Aegean coasts is limited. Optically stimulated luminescence dating techniques are deemed to be very promising indirect dating of the coastal sediments, especially when they are linked with archaeological evidence. The dating of the sediments from different sediment core depths, as they are determined by the method of luminosity, allows us to calculate the rate of sediment deposition over time. Additionally, the coastal evolution and stability were studied from 1945 until today, with the use of aerial photographs and satellite images. This paper presents the 6000 ka years evolution of a coastal landscape based on geomorphological, archaeological, and radio-chronological data. Based on the results, the early stages of the Ammoudara beach dune field appear to be formed ~9.0 – 9.6 ka BP, while the OSL ages from 6 m depth represented the timing of its stabilization (OSL ages ~5–6 ka). This indicates that the dune field appears to already have been formed long before the Bronze Age (5-10 ka BP) and became stabilized with only localized episodes of dune reactivation occurring, while high coastal erosion rates are found in modern times.
ARTICLE | doi:10.20944/preprints202009.0738.v1
Subject: Physical Sciences, Acoustics Keywords: coastal wind jets; Red Sea; Lagrangian pathways; hydraulics; dust storms; hydraulic jumps
Online: 30 September 2020 (10:41:43 CEST)
The Lagrangian and Eulerian structure and dynamics of a strong wind event in the Tokar Gap region are described using a WRF model hindcast for 2008. Winds in the Tokar Gap reach 25 m s-1 and remain coherent as a jet far out over the Red Sea, whereas equally strong wind jets occurring in neighboring gaps are attenuated abruptly by a jump-like hydraulic transition that occur just offshore of the Sudan coast. The transition is made possible by the supercritical nature of the jets, which are fed by air that spills down from passes at relatively high elevation. By contrast, the spilling flow in the ravine-like Tokar Gap does not become substantially supercritical and therefore does not undergo a jump, and also carries more total horizontal momentum. The Tokar Wind Jet carries some air parcels across the Red Sea and into Saudi Arabia, whereas air parcel trajectories in the neighboring jets ascend as they cross through the jumps, then veer sharply to the southeast and do not cross the Red Sea. The mountain parameter Nh/U is estimated to lie in the rage 1.0-4.0 for the general region, a result roughly consistent with a primary gap jet having a long extension, and supercritical jets spilling down from higher elevation passes. The strong event is marked by the formation of a cyclonic cell near the upstream entrance to the Tokar Gap, a feature absent from the more moderate events that occur throughout the summer. The cell contains descending air parcels that are fed into the primary and secondary jets. An analysis of the Bernoulli function along air parcel trajectories reveals an approximate balance between the loss of potential energy and gain of internal energy and pressure, with surprisingly little contribution from kinetic energy, along the path of the descending flow. All jets attain the critical wind speed nominally required to loft dust into the atmosphere, though only the Tokar Gap has a broad, delta region with plentiful deposits of silt.
ARTICLE | doi:10.20944/preprints202007.0574.v1
Subject: Biology, Ecology Keywords: Reconstruction techniques; population dynamics; seagrass; ocean acidification; volcanic CO2 seeps; Mediterranean Sea
Online: 24 July 2020 (09:00:00 CEST)
We used population reconstruction techniques to assess for the first time the population dynamics of a seagrass, Cymodocea nodosa, exposed to long-term elevated CO2 near three volcanic seeps and compare them with reference sites away from the seeps. Under high CO2, the density of shoots and of individuals (apical shoots), and the vertical and horizontal elongation and production rates, were higher. Nitrogen effects on rhizome elongation and production rates and on biomass, were stronger than CO2 as these were highest at the location where the availability of nitrogen was highest. At the seep where the availability of CO2 was highest and nitrogen lowest, density of shoots and individuals were highest, probably due to CO2 effects on shoot differentiation and induced reproductive output, respectively. In all three seeps there was higher short- and long-term recruitment and growth rates around zero, indicating that elevated CO2 increases the turnover of C. nodosa shoots.
ARTICLE | doi:10.3390/sci2030051
Subject: Keywords: climate change; sea-level rise; mangrove soils; surface elevation change; carbon storage
Online: 5 July 2020 (00:00:00 CEST)
The conservation of coastal wetland ecosystems, like mangrove forests and salt marshes, represents a critical strategy for mitigating atmospheric emissions and climate change in the 21st century. Yet the existence of these environments is threatened by human-induced disturbances, namely deforestation and accelerated sea-level rise. Coastal systems maintain surface elevation in response to sea-level rise through a combination of physical and biological processes both above and below the ground surface. The quantification and relative contribution of belowground process controls (e.g., seasonal water content, organic matter decomposition) on surface elevation change is largely unexplored but crucial for informing coastal ecosystem sustainability. To address this knowledge deficit, we integrated measurements of surface elevation change of the live root zone (0.5 to 1 m depth) with geotechnical data from co-located sediment cores in the Sundarbans mangrove forest (SMF) of southwest Bangladesh. Core data reveal that the primary belowground controls on surface elevation change include seasonal fluctuations in pore-water content and the relative abundance of fine-grained sediments capable of volumetric expansion and contraction, supporting an elevation gain of ~2.42 ± 0.26 cm yr−1. In contrast to many mangrove environments, the soils of the SMF contain little organic matter and are dominantly composed (>90%) of inorganic clastic sediments. The mineral-rich soil texture likely leads to less compaction-induced subsidence as compared to organic-rich substrates and facilitates surface equilibrium in response to sea level rise. Despite a relatively high soil bulk density, soil carbon (C) density of the SMF is very low owing to the dearth of preserved organic content. However, rates of C accumulation are balanced out by locally high accretion rates, rendering the SMF a greater sink of terrestrial C than the worldwide mangrove average. The findings of this study demonstrate that C accumulation in the SMF, and possibly other alluvial mangrove forests, is highly dependent on the continued delivery of sediment to the mangrove platform and associated settings.
ARTICLE | doi:10.20944/preprints201910.0304.v1
Subject: Earth Sciences, Environmental Sciences Keywords: dust transport; Australia; Tasman Sea; New Zealand; Antarctica; WRF-Chem; CALIPSO; MODIS
Online: 27 October 2019 (11:03:38 CET)
Between 11 to 15 February 2019, a dust storm originating from Central Australia with persistent westerly and south westerly winds caused high particles concentration at many sites in the state of New South Wales (NSW), both inland and along the coast. The dust continued on to New Zealand and to Antarctica in the south east. This study uses observed data from air quality monitoring stations in NSW and New Zealand, MODIS 3km AOD (Aerosol Optical Depth) product from Terra/Aqua and lidar aerosol profile from CALIPSO (Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations) satellite data, and the Weather Research Forecast WRF-Chem model based on GOCART-AFWA (Goddard Chemistry Aerosol Radiation and Transport – Air Force and Weather Agency) dust scheme and GOCART aerosol and gas-phase MOZART (Model for Ozone And Related chemical Tracers) chemistry model to study the long-range transport of aerosols for the period 11 to 15 February 2019 across eastern Australia and onto New Zealand and Antarctica. Wild fires also happened in northern NSW at the same time and their emissions are taken into account in WRF-Chem model by using Fire Inventory from NCAR (FINN) as emission input. Modelling results by the WRF-Chem model show that for the Canterbury region of South Island of New Zealand, peak concentration of PM10 (and PM2.5) as measured on 14 February 2019 at 05:00 UTC at the monitoring stations of Geraldine, Ashburton, Timaru and Woolston (Christchurch), which are more than 100km from each other and at Rangiora, Kaiapoi about 2 hours later, correspond to the prediction of high PM10 due to intrusion of dust to ground level from transported dust layer above. The Aerosol Optical Depth (AOD) observation data from MODIS Terra/Aqua and CALIOP lidar measurements on board CALIPSO satellite also indicate that high altitude of dust, originated from this dust storm event in Australia, was located above Antarctica. This study suggests that at present dust storms in Australia can transport dust from sources in Central Australia to the Tasman sea, New Zealand and Antarctica. This process has been going on for at least the last 170k years as indicated by dust found in ice cores from Antarctica and sediment records in the Tasman Sea.
ARTICLE | doi:10.20944/preprints201907.0299.v1
Subject: Life Sciences, Biotechnology Keywords: VNNV; mass-immunization; sea bass; recombinant bacterins; spinycterins; DNA-damaged; repair-less
Online: 26 July 2019 (11:46:15 CEST)
This work describes practical immunization of European sea bass (Dicentrarchus labrax) juveniles against viral nervous necrosis virus (VNNV), a betanodavirus causing worldwide mortalities in many fish species. Protection was obtained with the so called spinycterin vehicles consisting in irreversibly DNA-damaged DNA-repair-less E.coli displaying at their surface a downsized antigen. In this work we, i) maximized bacterial expression levels by downsizing the C protein to a fragment (frgC91-220) containing most of its antigenicity, ii) developed an scalable autoinduction bacterial media based in soy-bean increasing membrane display and reproducibility, iii) enriched surface expression by screening different anchors from several prokaryotic origins (anchor+frgC91-220), iv) preserved frgC91-220 antigenicity by inactivating bacteria by irreversible DNA-damage by means of Ciprofloxacin, and v) increased safety using a repair-less E.coli strain as spinycterin chassis. These second generation of spinycterins protected fish against VNNV challenge with partial (Nmistic+frgC91-220) or 100 % (YBEL+frgC91-220 ) protection, in contrast to those fish immunized with frgC91-220 spinycterins. The proposed spinycterin platform has high levels of environmental safety and cost effectiveness, thus providing potential for small fish vaccines for sustainable aquaculture.
ARTICLE | doi:10.20944/preprints201704.0035.v2
Subject: Earth Sciences, Atmospheric Science Keywords: Cold air outbreaks; Air–sea interaction; Polar climate; Wind speed; polar lows
Online: 2 May 2017 (17:45:56 CEST)
Marine cold air outbreaks (MCAOs) are large-scale events in which cold air masses are advected over open ocean. It is well-known that these events are linked to the formation of polar lows and other mesoscale phenomena associated with high wind speeds, and that they therefore in some cases represent a hazard to maritime activities. However, it is still unknown whether MCAOs are generally conducive to higher wind speeds than normal. Here this is investigated by comparing ocean near-surface wind speeds during MCAOs in atmospheric reanalysis products with different horizontal grid spacings, along with two case studies using a convection-permitting numerical weather prediction model. The study regions are the Labrador Sea and the Greenland–Iceland–Norwegian (GIN) Seas, where MCAOs have been shown to be important for air–sea interaction and deep water formation. One of the main findings is that wind speeds during the strongest MCAO events are higher than normal and higher than wind speeds during less severe events. Limited evidence from the case studies suggests that reanalyses with grid spacings of more than 50 km underestimate winds driven by the large ocean–atmosphere energy fluxes during MCAOs. The peak times of MCAO usually occur when baroclinic waves pass over the regions. Therefore, the strong wind episodes during MCAOs generally last for just a few days. However, MCAOs can persist for 50 days or more.
ARTICLE | doi:10.20944/preprints202205.0043.v1
Subject: Engineering, Energy & Fuel Technology Keywords: North Sea region; offshore grid; offshore hydrogen; offshore wind; system integration; IESA-NS
Online: 5 May 2022 (15:45:35 CEST)
The North Sea Offshore Grid concept has been envisioned as a promising alternative to: 1) ease the integration of offshore wind and onshore energy systems, and 2) increase the cross-border capacity between the North Sea region countries at low cost. In this paper we explore the techno-economic benefits of the North Sea Offshore Grid using two case studies: a power-based offshore grid, where only investments in power assets are allowed (i.e. offshore wind, HVDC/HVAC interconnectors); and a power-and-hydrogen offshore grid, where investments in offshore hydrogen assets are also permitted (i.e. offshore electrolysers, new hydrogen pipelines and retrofitted natural gas pipelines). We compare these scenario results with a business as usual scenario, in which offshore wind is connected radially to the shore and no offshore grid is deployed. All scenarios are run with the IESA-NS model, without any specific technology ban and under open optimization. This paper also presents a novel methodology, combining Geographic Information Systems and Energy System Models, to cluster offshore spatial data and define meaningful offshore regions and offshore hub locations. This novel methodology is applied to the North Sea region to define nine offshore clusters taking into account offshore spatial claims, and identifying suitable areas for single-use and multi-use of space for renewable energy purposes. The scenario results show that the deployment of an offshore grid provides relevant cost savings, ranging from 1% to 4.1% of relative cost decrease (2.3 bn € to 8.7 bn €) in the power-based, and ranging from 2.8% to 7% of relative cost decrease (6 bn € to 14.9 bn €) in the power-and-hydrogen based. In the most extreme scenario (H2) an offshore grid permits to integrate 283 GW of HVDC connected offshore wind and 196 GW of HVDC meshed interconnectors. Even in the most conservative scenario (P1) the offshore grid integrates 59 GW of HVDC connected offshore wind capacity and 92 GW of HVDC meshed interconnectors. When allowed, the deployment of offshore electrolysis is considerable, ranging from 61 GW to 96 GW, with capacity factors of around 30%. Finally, we also find that, when imported hydrogen is available at 2 €/kg (including production and transport costs), large investments in an offshore grid are not optimal anymore. In contrast, at import costs over 4 €/kg imported hydrogen is not competitive.
ARTICLE | doi:10.20944/preprints202203.0210.v1
Subject: Arts & Humanities, Archaeology Keywords: oysters; eastern Baltic Sea; zooarchaeology; archaeomalacology; written sources; archaeological finds; medieval; early modern
Online: 15 March 2022 (11:23:59 CET)
Along most of the European littoral, oysters were appreciated as a wholesome and palatable food since the Stone Age, yet were transported much further from their natural habitats when long-distance trade in marine foodstuffs began in medieval times. The brackish waters of the Baltic Sea are not considered a suitable environment for this mussel, and therefore all archaeological oyster shell finds are the result of import to the eastern Baltic. In this study, over 1000 shells found in different medieval and early modern archaeological contexts in Estonia were analysed and the obtained data recorded in a data repository. Some conclusions are set out, based on shell size and shape, and breakage traces, but more detailed taphonomic studies are left for the future. The study identifies the earliest imports of oysters recorded by archaeological material and written sources. Both show records not much earlier than the 16th century AD. Although no information is preserved about the exact origin of oysters imported to Estonia, the oyster beds most probably exploited are those in the central eastern North Sea, i.e. the Wadden Sea.
REVIEW | doi:10.20944/preprints202202.0104.v3
Subject: Medicine & Pharmacology, Sport Sciences & Therapy Keywords: EMG; muscle; spontaneous electrical activity (SEA); spasm; pain; CMECD protocol; phenoxybenzamine-lidocaine mixture
Online: 28 February 2022 (12:10:27 CET)
: This article was not intended to be a complete report of a standard clinical trial. It is a report of the outcomes of preliminary data for validation of the CMECD procedure (Coletti Method of EMG ChemoDenervation) protocol for the treatment of chronic pain resulting from chronic muscle spasm. Methods are here detailed on how to approach the patient with chronic pain, identify the presence of chronic muscle spasm, undertake the treatment protocol and how to perform the follow up process to confirm that chronic pain secondary to chronic muscle spasm was the accurate diagnosis. Furthermore, this article presents the results of a cohort of more than 90 patients treated by the CMECD procedure regarding location and duration of prior pain, prior treatment strategies, degree of success in resolving pain and duration of relief. Outcome data consisting of patient and staff reporting of specific situations in which the chronic pain treatment was successful has been included to help establish the “believability” of outcome successes and to elucidate the potential life altering effects of successful treatment of chronic pain secondary to chronic muscle spasm. This article will hopefully increase the interest in this treatment protocol and increase the chance that a classical international clinical trial will be undertaken.
ARTICLE | doi:10.20944/preprints202109.0084.v1
Subject: Earth Sciences, Atmospheric Science Keywords: mesoscale convective complex; heavy rainfall; warm front; sea surface temperature; eastern Maritime Continent
Online: 6 September 2021 (11:06:17 CEST)
A severe flash flood hit Luwu, Sulawesi, Indonesia, on 13 July 2020. This flood was preceded by persistent heavy rainfall from 11 to 13 July 2020. In this study, we explore both the physical and dynamical processes that caused the heavy rainfall using a convection-permitting model with 1-km resolution. The heavy rainfall was modulated by the development of a pair of Mesoscale Convective Complexes (MCCs) during the night. The pair of MCCs was triggered by an anti-cyclonic vorticity anomaly over the Makassar Strait and was maintained by the warm front passing between the sea and land over central Sulawesi. This front was characterized by moist-warm and cold-dry low-level air, which may have helped to extend the lifetime of the MCCs. The northwestward propagation of the MCCs was due to the interaction between predominantly southeasterly monsoon and sea surface temperature anomalies.
ARTICLE | doi:10.20944/preprints202105.0215.v1
Subject: Life Sciences, Biochemistry Keywords: Cymothoida; marine fish parasite; South China Sea; east coast Malaysia; crustacean fish parasite
Online: 10 May 2021 (15:32:00 CEST)
A checklist of parasitic cymothoids from Malaysian waters is presented based on available literature and material collected from 2010 to 2020. Most of the collected specimens were recorded from waters of Terengganu, east coast of Peninsular Malaysia (facing South China Sea), whereas literature records were represented from Sarawak, along the Miri coast of northwest Borneo. The checklist comprises 18 species under 10 genera, seven of which are new records from Malaysia, which includes Anilocra nemipteri Bruce, 1987; Ceratothoa barracuda Martin, Bruce and Nowak, 2015; Ceratothoa carinata (Bianconi, 1869); Cymothoa epimerica Avdeev, 1979; Elthusa sigani Bruce, 1990; Joryma engraulidis (Barnard, 1936) and Renocila richardsonae Williams and Bunkley-Williams, 1992. Eight new host records are based on collected specimens: Anilocra nemipteri was dorsally attached on Nemipterus nemurus (Bleeker 1857), Nemipterus nematophorus (Bleeker 1854), Nemipterus tambuloides (Bleeker 1853), and Nemipterus thosaporni Russell 1991 (family Nemipteridae); Ceratothoa carinata was found in the buccal cavity of Decapterus macrosoma Bleeker 1851 (family Carangidae); Cymothoa eremita (Brunnich, 1783) was attached in the buccal cavity of Nemipterus tambuloides and Nemipterus furcosus (Valenciennes 1830); Elthusa sigani was found attached on Pterois russelli Bennett 1831 (family Scorpaenidae); and Renocila richardsonae was attached on the caudal fin of Upeneus japonicus (Houttuyn 1782) (family Mullidae). All cymothoid species listed here are known to have a Central Indo Pacific distribution, with some ranging as far as the western Indian Ocean. The cymothoid-host association is here listed from 28 fish families, with the most common reported from Carangidae (pompanos, jack mackerels, runners, scads), Engraulidae (anchovies) and Leiognathidae (ponyfishes, slipmouths). This paper is the first comprehensive treatment to update both verified literature data and deposited specimens, with a key for the family Cymothoidae in Malaysian waters.
ARTICLE | doi:10.20944/preprints202002.0319.v1
Subject: Earth Sciences, Oceanography Keywords: altimeter; sea surface wind speed; significant wave height; mean wave period; atmospheric instability
Online: 23 February 2020 (11:09:10 CET)
Spaceborne altimeters are an important data source for obtaining global sea surface wind speeds (U10). Although many altimeter U10 algorithms have been proposed and they perform well, there is still room for improvement. In this study, the data from ten altimeters were collocated with buoys to investigate the error of the altimeter U10 retrievals. The U10 residuals were found to be significantly dependent on many oceanic and atmospheric parameters. Because these oceanic and atmospheric parameters are inter-correlated, an asymptotic strategy was used to isolate the impact of different parameters and establish a neural-network-based correction model of altimeter U10. The results indicated that significant wave heights and mean wave periods are effective in correcting U10 retrievals, probably due to the tilting modulation of long-waves on the sea surface. After the wave correction, the root-mean-square error of the retrieved U10 was reduced from 1.42 m/s to 1.24 m/s and the impacts of thermodynamic parameters, such as sea surface (air) temperate, became negligible. The U10 residuals after correction showed that the atmospheric instability can lead to errors on extrapolated buoy U10. The buoy measurements with large air-sea temperature differences need to be excluded in the Cal/Val of remotely sensed U10.
ARTICLE | doi:10.20944/preprints201912.0318.v1
Subject: Engineering, Marine Engineering Keywords: Hull-propeller interaction; Full-scale CFD; Scale effect; Self-propulsion; Statistical sea trails
Online: 24 December 2019 (11:16:25 CET)
Accurate prediction of the self-propulsion performance is one of the most important factors for energy-efficient design of a ship. In general, the hydrodynamic performance of a full-scale ship could be achieved by model-scale simulation or towing tank test with extrapolations. With the development of CFD methods and computing power, directly predict ship performance with full-scale CFD is an important approach. In this article, a numerical study on the full-scale self-propulsion performance with propeller operating behind ship at model- and full-scale is presented. The study includes numerical simulations using RANS method with double-model and VOF model respectively and scale effect analysis based on overall performance, local flow fields and detailed vortex identification. Verification study on grid convergence is also performed for full-scale simulation with global and local mesh refinements. And a series of sea trail tests were performed to collect reliable data for the validation of CFD predictions. The analysis of scale effect on hull-propeller interaction shows that the difference on hull boundary layer and flow separation is the main source of scale effect on ship wake. And the results of the fluctuations of propeller thrust and torque along with circulation distribution and local flow field show that propeller’s loading is significantly higher for model-scale ship. It is suggested that the difference on vortex evolution and interaction is more pronounced and have larger effects on ship’s powering performance at model-scale than full-scale according to the simulation results. From the study on self-propulsion prediction, it could be concluded that the simplification on free surface treatment does not only affect the wave-making resistance for bare hull but also the propeller performance and propeller induced ship resistance which can produced up to 5% uncertainty to the power prediction. Roughness is another important factor in full-scale simulation because it has up to approximately 7% effect on the delivery power. As a result of validation study, the numerical simulations of full-scale ship self-propulsion shows good agreement with the sea trail data especially for cases that have considered both roughness and free surface effects. This result will largely enhance our confidence to apply full-scale simulation in the prediction of ship’s self-propulsion performance in the future ship designs.
ARTICLE | doi:10.20944/preprints201908.0306.v1
Subject: Biology, Ecology Keywords: fisheries; fish farming; demersal fish; sea trout; stock collapse; three-mile fishing limit
Online: 29 August 2019 (05:39:29 CEST)
Salmon farming has been blamed for the collapse of the sea trout (Salmo trutta) fishery in Loch Maree on Scotland’s west coast despite the absence of any direct evidence. Stocks of west coast demersal marine fish, especially around the Clyde Estuary have also declined over a similar time span. The decline of these marine fish stocks can be attributed to the removal of the “three-mile fishing limit” in 1984 by UK Government legislation. Sea trout inhabit the same inshore waters as targeted demersal fish and can be caught as by-catch. Comparisons of the decline of demersal species and the sea trout from Loch Maree and the west coast show a high degree of correlation. Stocks of whiting (Merlangius merlangus) from inshore waters have found to consist of small fish which mirrors the stock makeup of the Loch Maree sea trout stock.
ARTICLE | doi:10.20944/preprints201906.0167.v1
Subject: Earth Sciences, Oceanography Keywords: air-sea interface; wind–waves; turbulent currents; Reynolds stress; vertical mixing; eddy viscosity
Online: 18 June 2019 (05:44:29 CEST)
The aim of work is to derive an explicit expression for a function of vertical mixing induced by wind-waves. To this end, in the Navier-Stokes equations, a current is decomposed into four constituents: the mean flow, the wave-orbital motion, the wave-induced turbulent and the background turbulent currents. This decomposition allows separating the wave-induced Reynolds stress, Rw, from the background one, Rb. To make a statistical closure for Rw, the Prandtl approach for the background turbulent fluctuations is used that results in an implicit expression for the wave-induced vertical mixing function, Bv. Expression for Bv is specified based on the author’s results for the eddy viscosity found earlier in the frame of the three-layer concept for a wavy air–sea interface, used for modelling wind-drift currents . Finally, the explicit parameterization for Bv(a, u*, z) is found as a linear function in both the wave amplitude at depth z, a(z), and the friction velocity in the air, u*. The linear dependence of function Bv(a) on the wave amplitude provides the enhanced vertical mixing induced by wind–waves in comparison with function Bv(a) having the cubic dependence found in , as far as the wind-wave amplitude a(z) decays exponentially with depth.
ARTICLE | doi:10.20944/preprints201804.0336.v1
Subject: Earth Sciences, Atmospheric Science Keywords: typhoon Durian; tropical cyclone; wind-pressure relationships; South China Sea; sensitivity analysis; WRF
Online: 26 April 2018 (08:59:09 CEST)
Typhoon Durian forming over the Western North Pacific Ocean and entering into the South China Sea (SCS), caused extreme and widespread damages in 2006. In this research, sensitivity analyses on different physical parameterization schemes of the Weather Research and Forecasting Atmospheric Model (WRF-ATM) have been utilized to study typhoon Durian. Model accuracy and performance testing were investigated with different initial conditions during the tropical cyclone simulation in the SCS. The initial and boundary conditions (IBCs) for all experiments were derived from the European Centre for Medium Range Weather Forecasts (ECMWF), Re-Analysis Interim (ERAI), and the National Centers for Environmental Prediction (NCEP) with Final (FNL) analysis data compiled through the WRF-ATM model. The sensitivity analysis results indicated a major improvement for the cumulus scheme by using the Grell-Devenyi scheme along with the PBL scheme of Yonsei University, mixed-phase microphysics scheme of the WRF Single Moment 5-class and IBCs for ECMWF-ERAI of TC simulation under the context of Wind-Pressure Relationships. This predicted better track and intensity comparing with these of the Joint Typhoon Warning Center. The results revealed that the TC track and intensity were well simulated by the WSM5-GD combination for the WRF-ATM model with an intensity error of 1.69 hPa for minimum surface level pressure, maximum wind speed of 1.83 knots and average track error of 25 km in 72 hours. The simulations showed that the potential track and intensity error decreased with the delayed IBCs, suggesting that the model simulation is more dependable when the coast is approached by the TC.
ARTICLE | doi:10.20944/preprints201803.0144.v1
Subject: Medicine & Pharmacology, Oncology & Oncogenics Keywords: sea anemone; drug discovery; cancer; antiangiogenic; endothelial cells; RGD motif; Kunitz type inhibitor
Online: 19 March 2018 (08:15:38 CET)
Sea anemones are a remarkable source of active principles due to a decentralized venom system. Blood vessel formation or angiogenesis is a very promising target against cancer, but the few available anti-angiogenic compounds have a limited efficacy. In this study, a protein fraction was purified from tentacles of Anemonia viridis able to limit endothelial cells proliferation and vessel network formation or angiogenesis at low concentration (14 nM). The sequences in this protein fraction were determined with Edman degradation and Mass Spectrometry In Source Decay and revealed homologies with BDS sea anemones. The presence of a two turn alpha helix observed with Circular Dichroism and a trypsin activity inhibition suggested that the active principle could be a Kunitz-type inhibitor, which may interact with an integrin due to a RGD motif well exposed to the solvent as revealed by Molecular Modeling. This active principle could improve antiangiogenic therapy from existing antiangiogenic compounds binding on the VEGF.
ARTICLE | doi:10.20944/preprints202206.0200.v1
Subject: Engineering, Mechanical Engineering Keywords: Augmentation,; exoskeleton; lifting strategy; lumbar support; SEA; series elastic actuator; spiral spring; machine design
Online: 14 June 2022 (08:50:27 CEST)
Lumbar support exoskeletons with active and passive actuators are currently the cutting-edge technology for preventing back injuries in workers while lifting heavy objects. However, many challenges still exist in both types of exoskeletons, including rigid actuators, risks of human-robot interaction, high battery consumption, bulky design, and limited assistance. In this paper, the design of a compact, lightweight energy storage device combined with rotary series elastic (ES-RSEA) is proposed for use in a lumbar support exoskeleton to increase the level of assistance and exploit the human bioenergy during the two stages of the lifting task. ES takes the responsibility to store and release passive mechanical energy while RSEA provides excellent compliance and prevents injury from the human body's undesired movement. The experimental tests on the spiral spring showed excellent linear characteristics (above 99%) with an actual spring stiffness of 9.96 Nm/rad. The results demonstrate that ES-RSEA can provide maximum torque assistance in the ascent phase with 66.6 Nm while generating nearly 21 Nm of spring torque during descent without turning on the DC motor. Ultimately, the proposed design can maximize the energy storage of human energy, exploit the biomechanics of lifting tasks, and reduce the burden on human effort to perform lifting tasks.
ARTICLE | doi:10.20944/preprints202009.0080.v1
Subject: Earth Sciences, Geophysics Keywords: earthquake; source observations; body wave modeling; seismicity; ionian sea; gnss; machine learning; neural network
Online: 4 September 2020 (04:08:49 CEST)
During the period January 2014 – October 2018, four strong earthquakes occurred in the Ionian Sea, Greece. A rich aftershock sequence followed each event of them. More analytically, according to the manual solutions of National Observatory of Athens, the first event (K1), occurred on 26 January 2014 in Kefallinia Island with magnitude ML = 5.8, which was followed by another in the same region (K2) on 3 February 2014 with magnitude ML = 5.7. The third event occurred on 17 November 2015, ML = 6.0 in Lefkas Island (L1) and the last on 25 October 2018, ML = 6.6 in Zande Island (Z1). The first three of these earthquakes caused moderate structural damages mainly in houses and produced particular unrest to the local population. This work presents first the calculation of the source parameters of the strong events as well as for all earthquakes with magnitude ML > 4.0, using the methodology of the Moment tensor inversion and secondary data from permanent GPS stations were analyzed to confirm the findings from seismological data and to investigate the displacement due to the earthquakes.
REVIEW | doi:10.20944/preprints201911.0067.v1
Subject: Engineering, Energy & Fuel Technology Keywords: sector coupling; energy system modelling; North Sea energy system; energy transition; open science; Oemof
Online: 6 November 2019 (14:03:54 CET)
Sector coupling is one of the emerging topics in recent energy and climate change policy discussions. It can play a significant role in creating the pathway of a renewable-based energy system in the European energy sector. The North Sea region is very likely to play a key role in the transition to a sustainable energy system. Though different energy modelling approaches allow a versatile use, they lead to the problem of an unclear understanding of specific aspects of sector coupling, and the relevance of existing tools and techniques to model and analyze such a system. This paper is aimed at providing a comprehensive understanding of sector coupling and its incorporation in energy system models. Followed by a thorough literature review on sector coupling and energy system modelling, the paper outlines an approach to select an appropriate tool based on the specific rationales of the research. The paper also presents ‘Oemof’ as an open model tool to address the complex challenges of energy systems. The conclusions from the literature review provide a detailed understanding of the concept of sector coupling and indicate that it can be advantageous from the viewpoints of decarbonization, flexibility, network optimization, and system efficiency. To solve the coupling barriers, diversified techno-socio-economic circumstances should be taken into account through the use of model collaboration. It is also demonstrated how a list of appropriate tools for model collaboration can be picked up methodologically from an available wide range of models. Finally, ‘Oemof’ is hypothesized as a progressive tool to design a sector-coupled and renewable-based energy system in the North Sea region.
ARTICLE | doi:10.20944/preprints201806.0304.v1
Subject: Earth Sciences, Atmospheric Science Keywords: monsoon, maritime continent, ocean-atmospheric phenomena, Southeast Asia, biomass burning, sea surface temperature, rainfall.
Online: 19 June 2018 (15:31:51 CEST)
Maritime Continent (MC) positions in between Asian and Australian summer monsoons zone. Its complex topography and shallow seas around it is a major challenge for the climate researchers to model and understand it. Monsoon in this area is affected by inter-scale ocean-atmospheric interactions like El-Niño Southern Oscillation (ENSO), Indian Ocean Dipole (IOD) and Madden-Julian Oscillation. Monsoon rainfall in MC (especially in Indonesia and Malaysia) profoundly exhibits its variability dependency on ocean-atmospheric phenomena in this region. This monsoon shift often introduces to dreadful events like biomass burning (BB) in Southeast Asia (SEA) which sometimes leads to severe trans-boundary haze pollution. In this study, the episode of BB in 2015 of SEA is highlighted and discussed. Observational satellite datasets are tested by performing simulations with numerical weather prediction (NWP) model using WRF-ARW (Advanced research WRF). Observed and model datasets are compared to study the sea surface temperature (SST) and precipitation (rainfall) anomalies influenced by ENSO, IOD and MJO. Correlations have been recognised which explains the delayed rainfall of regular monsoon in MC due to the influence of ENSO, IOD and MJO during 2015 BB episode, eventually leading to intensification of fire and severe haze.
ARTICLE | doi:10.20944/preprints201704.0067.v1
Subject: Earth Sciences, Other Keywords: ice algae; brine channels; organic chemistry; Arctic sea ice; CICE model; mechanism development; biomacromolecules
Online: 12 April 2017 (05:12:28 CEST)
A numerical mechanism connecting ice algal ecodynamics with the buildup of organic macromolecules is tested within modeled pan-Arctic brine channels. The simulations take place offline in a reduced representation of sea ice geochemistry. Physical driver quantities derive from the global sea ice code CICE, including snow cover, thickness and internal temperature. The framework is averaged over ten boreal biogeographic zones. Computed nutrient-light-salt limited algal growth supports grazing, mortality and carbon flow. Vertical transport is diffusive but responds to pore structure. Simulated bottom layer chlorophyll maxima are reasonable, though delayed by about a month relative to observations due to uncertainties in snow variability. Upper level biota arise intermittently during flooding events. Macromolecular concentrations are tracked as proxy proteins, polysaccharides, lipids and refractory humics. The fresh biopolymers undergo succession and removal by bacteria. Baseline organics enter solely through cell disruption, so that the internal carbon content is initially biased low. By including exudation, agreement with dissolved organic or individual biopolymer data is achieved given strong release coupled to light intensity. Detrital carbon then reaches hundreds of micromolar, sufficient to support structural changes to the ice matrix.
ARTICLE | doi:10.20944/preprints202110.0051.v1
Subject: Biology, Animal Sciences & Zoology Keywords: Longman’s beaked whale; Indopacetus pacificus; Mesoplodon spp.; tuna gillnet fishery; bycatch; citizen science; Arabian Sea
Online: 4 October 2021 (11:40:47 CEST)
Beaked whales (Ziphiidae) are rarely reported in the Arabian Sea. Four new cases (five individuals) were documented in deep waters offshore Pakistan through a pilot programme in 2015-2018 where trained fishers video-recorded net entanglements in the pelagic tuna drift gillnet fishery. Videos were analysed frame-by-frame. The large body size (est. 5-6m) of one specimen, its moderately bulbous melon, long tubular rostrum and a large falcate dolphin-like dorsal fin, indicated Longman’s beaked whale Indopacetus pacificus. It represents the first record for Pakistan (EEZ), and with a stranding at Gujarat, India, a second for the northern Arabian Sea. The other 4 ziphiids were significantly smaller (est. 3– 4.5m), with a decidedly non-bulbous melon, variable short to moderately short rostra, falcate to subtriangular dorsal fin and a nondescript greyish colouration, identified as Mesoplodon spp. Video quality was poor but none of the specimens showed tusks, arched mandible lines or noticeable linear tooth rakes, practically excluding adult males. The successful release of all net-entangled beaked whales is unprecedented. The simultaneous bycatch of two mesoplodonts in the same net set is equally exceptional. This citizen science strategy adds to our understanding of the distribution of I. pacificus and mesoplodonts, which may be more common in the Arabian Sea than the scarce literature suggests. If significant bycatch of beaked whales is confirmed, the massive tuna gillnet fishing effort in the Arabian Sea could have negative implications for their conservation status.
ARTICLE | doi:10.20944/preprints202104.0065.v1
Subject: Earth Sciences, Atmospheric Science Keywords: sea surface pCO2; ocean color remote sensing; CatBoost algorithm; temporal and spatial distribution; influencing factors
Online: 2 April 2021 (13:58:50 CEST)
Sea surface partial pressure of CO2 (pCO2) is a critical parameter in the quantification of air-sea CO2 flux, which plays an important role in calculating the global carbon budget and ocean acidification. In this study, we use chlorophyll-a concentration (Chla), sea surface temperature (SST), absorption due to dissolved and particulate detrital matter (Adg), diffuse attenuation coefficient of downwelling irradiance at 490nm (Kd) and mixed layer depth (MLD) as input data for retrieving the sea surface pCO2 in the North Atlantic based on a remote sensing empirical approach with the Categorical Boosting (CatBoost) algorithm. The results show that the root mean square error (RMSE) is 8.25μatm, the mean bias error (MAE) is 4.92μatm and the coefficient of determination (R2) can reach 0.946 in the validation set, which mean that the CatBoost model makes an improvement compared to other models in the published studies. In the further analysis of the spatial and temporal distribution of the sea surface pCO2 in the North Atlantic, it can be found that the North Atlantic sea surface pCO2 has a clear trend with latitude variations and have strong seasonal changes. Furthermore, the sea surface pCO2 in this area is mainly affected by sea temperature and salinity, and influenced by biological activities in some sub-regions.
Subject: Earth Sciences, Atmospheric Science Keywords: cross-shore profile; sediment transport rates; semi-enclosed sea; sandy coast; coastal erosion; dune development.
Online: 15 December 2020 (10:22:52 CET)
We report cross-shore profile evolution at Palanga, eastern Baltic Sea where short period waves dominate. Cross-shore profile studies began directly after a significant coastal erosion caused by storm “Anatoly” in December of 1999 and continued for a year. Further measurements were undertaken sixteen years later. Cross-shore profile ∆V(x) changes were described, and cross-shore transport rates Q(x) were calculated. A K-means clustering technique was applied to determine sections of the profile with the same development tendencies. Profile evolution was strongly influenced by the depth of closure which is constrained by a moraine layer and the presence of a groyne. The method used divided the profile into four clusters: the 1st cluster in the deepest water represents profile evolution limited by the depth of closure, and the 2nd and 3rd mostly are affected by processes induced by wind, wave and sea-water level changes. The most intensive sediment volume changes were observed directly after the coastal erosion. The largest sand accumulation was in the 4th profile cluster, which includes the upper beach and dunes. Seaward extension of the dune system caused a narrowing of the visible beach which has led to an increased sand volume (accretion) being misinterpreted as erosion
ARTICLE | doi:10.20944/preprints202008.0675.v1
Subject: Earth Sciences, Geology Keywords: wave impact assessment; characteristic wave height; Salento peninsula; Taranto Gulf; Mediterranean Sea; November 2019 storm
Online: 30 August 2020 (15:53:07 CEST)
The storm of November 12th-13th, 2019 provoked the displacements of boulders in a central Mediterranean rocky coast; with reference to a selected area, prone to the boulder production and geomorphologically monitored for years, a field-oriented study approach was applied for the phenomenon, by collating data concerning pre-storm locations and kinematics of these boulders. The number of displaced boulders is 11, that is, in terms of morphological imprint of a specific storm, one of the major study cases for the Mediterranean. In addition, based on widely used hydrodynamic equations, the minimum wave height required to displace the boulders is assessed. The values conform with the expected values for the wave climate dominating during the causative meteorological event and give a measure of the energy of the storm slamming the coast. Boulder dislodgements usually have plays a key role in determining the rate of the coastal recession, likely also in the investigated area. In view of an adverse climate evolution with a possible increase of energy and frequency of severe storms, the results deriving from the study of this morphodynamics should be considered for the hazard assessment and coastal management.
ARTICLE | doi:10.20944/preprints201712.0107.v1
Subject: Earth Sciences, Other Keywords: climate change; cryosphere; Arctic; permafrost; sea ice; tipping elements; climate impacts; climate policy; Paris agreement
Online: 15 December 2017 (12:51:43 CET)
Arctic feedbacks will accelerate climate change and could jeopardise mitigation efforts. The permafrost carbon feedback releases carbon to the atmosphere from thawing permafrost and the sea ice albedo feedback increases solar absorption in the Arctic Ocean. A constant positive albedo feedback and zero permafrost feedback have been used in nearly all climate policy studies to date, while observations and models show that the permafrost feedback is significant and that both feedbacks are nonlinear. Using novel dynamic emulators in the integrated assessment model PAGE-ICE, we investigate nonlinear interactions of the two feedbacks with the climate and economy under a range of climate scenarios consistent with the Paris Agreement. The permafrost feedback interacts with the land and ocean carbon uptake processes, and the albedo feedback evolves through a sequence of nonlinear transitions associated with the loss of Arctic sea ice in different months of the year. The US’s withdrawal from the current national pledges could increase the total discounted economic impact of the two Arctic feedbacks until 2300 by $25 trillion, reaching nearly $120 trillion, while meeting the 1.5 °C and 2 °C targets will reduce the impact by an order of magnitude.
ARTICLE | doi:10.20944/preprints201706.0021.v1
Subject: Earth Sciences, Oceanography Keywords: sea surface temperature (SST); radial basis function network (RBFN); improved nearest neighbor cluster (INNC) algorithm
Online: 5 June 2017 (05:01:17 CEST)
A radial basis function network (RBFN) method is proposed to reconstruct daily Sea surface temperatures (SSTs) with limited SST samples. For the purpose of evaluating the SSTs using this method, non-biased SST samples in the Pacific Ocean (10°N–30°N, 115°E–135°E) are selected when the tropical storm Hagibis arrived in June 2014, and these SST samples are obtained from the OISST products according to the distribution of AVHRR L2p SST and in-situ SST data. Furthermore, an improved nearest neighbor cluster (INNC) algorithm is designed to search the optimal hidden knots for RBFNs from both the SST samples and the background fields. Then the reconstructed SSTs from the RBFN method are compared with the results from the optimum interpolation (OI) method. The statistical results show that the RBFN method has a better performance of reconstructing SST than the OI method in the study, and the average RMSE is 0.48°C for the RBFN method, which is quite smaller than the value of 0.69°C for the OI method. Additionally, the RBFN methods with different basis functions and clustering algorithms are tested, and we discover that the INNC algorithm with multi-quadric function is quite suitable for the RBFN method to reconstruct SSTs when the SST samples are sparsely distributed.
ARTICLE | doi:10.20944/preprints202206.0322.v1
Subject: Life Sciences, Virology Keywords: Viral Ecology; APMV; wild birds; Surveillance of Avian Paramyxoviruses; phylogenetics; MinION; Azov-Black Sea region in Ukraine
Online: 23 June 2022 (09:33:18 CEST)
Emerging RNA virus infections are a growing concern among domestic bird and poultry industries due to the severe impact it can have on the flock health and economic livelihoods. Avian paramyxoviruses (APMV) are pathogenic, negative sense RNA viruses that cause serious infections in the respiratory and central nervous system. APMV was detected in multiple avian species during the 2017 migration season in Ukraine, and studied using PCR, virus isolation, and sequencing. Of the 4090 wild bird samples, eleven swabs were isolated in chicken embryos and identified for APMV serotype by hemagglutinin inhibition test: APMV-1, APMV-4, APMV-6, APMV-7. At a variety of sites in Ukraine we characterized the virulence of the virus and further analyzed and predicted the potential risks of spillover to immunologically naïve populations. RNA was extracted and amplified using a multiplex-tiling primer approach to encompass full cDNA genomes. Full-length APMV-1 (n=5) and APMV-6 (n=2) genomes were sequenced on an Oxford Nanopore MinION device in Ukraine. All APMV-1 and APMV-6 fusion (F) proteins possessed a monobasic cleavage site, suggesting these APMV were likely low virulence, annually circulating strains. Utilization of this low-cost method will identify gaps in viral evolution and circulation in this understudied but important critical region for Eurasia.
ARTICLE | doi:10.20944/preprints202007.0081.v1
Subject: Biology, Animal Sciences & Zoology Keywords: Dryophytes immaculatus; Dryophytes suweonensis; Dryophytes flaviventris; Yellow sea; North East Asia; threat; amphibian; recommendation IUCN Red List
Online: 5 July 2020 (15:17:27 CEST)
Threat assessment is important to prioritize species conservation projects and planning. The taxonomic resolution regarding the status of the “Dryophytes immaculatus group” and the description of a new species in the Republic of Korea resulted in a shift in ranges and population sizes. Thus, reviewing the IUCN Red List status of the three species from the group: D. immaculatus, D. suweonensis and D. flaviventris and recommending an update is needed. While the three species have similar ecological requirements and are distributed around the Yellow sea, they are under contrasting anthropological pressure and threats. Here, based on the literature available, I have applied all IUCN Red List criteria and tested the fit of each species in each criteria to recommend listing under the adequate threat level. This resulted in the recommendation of the following categories: Near Threatened for D. immaculatus, Endangered following the criteria C2a(i)b for D. suweonensis and Critically Endangered following the criteria E for D. flaviventris. All three species are declining, mostly because of landscape changes as a result of human activities, but the differences in range, population dynamics and already extirpated sub-populations result in different threat levels for each species. Dryophytes flaviventris is under the highest threat category mostly because of its limited range, segregated into two sub-populations and several known historical sub-populations are now extirpated. Immediate actions for the conservation of this species are required. Dryophytes suweonensis is present in both the Republic of Korea and the Democratic Republic of Korea and is under lower ecological pressure in DPR Korea. Dryophytes immaculatus is present in the People’s Republic of China, on a very large range despite a marked decline. I recommend joint efforts for the conservation of these species.
Subject: Earth Sciences, Oceanography Keywords: radionuclide; tracer; data collection; antimony 125 (125Sb), tritium (3H), dispersion; modelling; English Channel; North Sea; Biscay Bay
Online: 24 January 2020 (16:03:50 CET)
Significant amounts of anthropogenic radionuclides were introduced in ocean waters following nuclear atmospheric tests and development of the nuclear industry. Dispersion of artificial dissolved radionuclides has been extensively measured for decades over the European continental shelf. The radionuclide measurement and release fluxes databases provided here represent an exceptional opportunity to validate dispersion hydrodynamic models. MARS hydrodynamic model have been applied at different scales to reproduce in realistic conditions the measured dispersion. Specific methods have been developed to obtain qualitative and quantitative results and perform model/measurement comparisons. Model validation concerns short to large scales with dedicated surveys following the dispersion: it was performed within two and three dimensions framework and from minutes and hours following a release up to several years. Results are presented concerning the dispersion of radionuclides in marine systems deduced from standalone measurements, or according to model comparisons. It allows characterising dispersion over the continental shelf, pathways, transit times, budgets and source terms. This review exhibits the main features retained from the point of view of radiotracers, hydrodynamic models and model/measurement methods with perspectives of applications in other areas or oceanographic domains.