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Rebuilding Spinal Circuit Computation Through a Patient-Specific Interneuron Precision Model
Sasi Kumar Jagadeesan
,Ryan Vimukthie Sandarage
,Eve C. Tsai
Spinal interneurons constitute the computational core of spinal circuitry, integrating excitatory and inhibitory inputs to generate the rhythmic patterns that drive locomotor, postural, and autonomic control. Their developmental logic, molecular diversity, and adaptive plasticity make them central determinants of functional recovery after spinal cord injury. Yet most regenerative strategies continue to emphasize cellular replacement rather than the restoration of the computational integrity of spinal networks. In this review, we reframe spinal repair as the reconstitution of circuit computation. We synthesize current insights into how embryonic patterning programs defined by SHH, Wnt, and BMP gradients, refined by Notch and retinoic acid signaling, and consolidated by axon guidance cues, establish interneuron diversity, connectivity, and network symmetry that together encode the logic of motor coordination. Spinal cord injury disrupts this developmental logic, fragmenting excitatory and inhibitory balance and desynchronizing rhythmic modules, while residual circuits retain latent capacity for resynchronization through plasticity and neuromodulation. Building upon this developmental and computational continuum, we propose the Patient Specific Interneuron Precision Model (PIPM), a closed loop framework that links patient specific biological states including progenitor competence, morphogen sensitivity, and metabolic tone to circuit level computation and recovery potential. By bridging molecular, physiological, and clinical insights, the PIPM establishes a systems logic that unifies biological competence with circuit recovery, positioning interneuron computation as the conceptual foundation for precision spinal cord regeneration.
Spinal interneurons constitute the computational core of spinal circuitry, integrating excitatory and inhibitory inputs to generate the rhythmic patterns that drive locomotor, postural, and autonomic control. Their developmental logic, molecular diversity, and adaptive plasticity make them central determinants of functional recovery after spinal cord injury. Yet most regenerative strategies continue to emphasize cellular replacement rather than the restoration of the computational integrity of spinal networks. In this review, we reframe spinal repair as the reconstitution of circuit computation. We synthesize current insights into how embryonic patterning programs defined by SHH, Wnt, and BMP gradients, refined by Notch and retinoic acid signaling, and consolidated by axon guidance cues, establish interneuron diversity, connectivity, and network symmetry that together encode the logic of motor coordination. Spinal cord injury disrupts this developmental logic, fragmenting excitatory and inhibitory balance and desynchronizing rhythmic modules, while residual circuits retain latent capacity for resynchronization through plasticity and neuromodulation. Building upon this developmental and computational continuum, we propose the Patient Specific Interneuron Precision Model (PIPM), a closed loop framework that links patient specific biological states including progenitor competence, morphogen sensitivity, and metabolic tone to circuit level computation and recovery potential. By bridging molecular, physiological, and clinical insights, the PIPM establishes a systems logic that unifies biological competence with circuit recovery, positioning interneuron computation as the conceptual foundation for precision spinal cord regeneration.
Posted: 15 December 2025
The Role of Oscillatory Processes in Encoding Information by the Hippocampal System
Valetina Kichigina
,Ivan Mysin
Posted: 15 December 2025
Neuromechanobiology: Bridging Mechanobiology and Neuroscience Through Evidence and Open Questions
Karolina Zimkowska
,Marc Riu-Villanueva
,José A del Río
Posted: 15 December 2025
Individual-Level Behavioral Dataset Linking Trace Eyeblink Conditioning, Contextual Fear Memory, and Home-Cage Activities in rTg4510 and Wild-Type Mice with Doxycycline Treatment
Ryo Kachi
,Yasushi Kishimoto
Posted: 15 December 2025
The Role of Calcium-Permeable Kainate and AMPA Receptors in the Leading Reaction of Gabaergic Neurons to Excitation
The Role of Calcium-Permeable Kainate and AMPA Receptors in the Leading Reaction of Gabaergic Neurons to Excitation
V. P. Zinchenko
,A. M. Kosenkov
,A. I. Sergeev
,F. V. Tyurin
,E. A. Turovsky
,B. K. Kairat
,A. E. Malibayeva
,G. A. Tussupbekova
,S. T. Tuleukhanov
Posted: 12 December 2025
Myelin Basic Protein Post-Translational Modifications Orchestrate Astrocyte Regulatory Networks
Jeremy Ramsden
,Marika Chikviladze
,Nino Mamulashvili
,Lali Shanshiashvili
,David Mikeladze
Multiple sclerosis (MS) pathogenesis involves not only immune-mediated myelin injury but also glial responses. We examined how three charge isomers of myelin basic protein (MBP)—native (C1), phosphorylated (C4), and citrullinated (C8)—modulate rat astrocytes. Cytokines were quantified and grouped (pro/anti-inflammatory, chemotactic, neurotrophic, angiogenic, tissue remodeling), and regulatory markers assessed. C1 strongly upregulated the lipid-sensing receptor LXR, and reduced global DNA methylation; C4 moderately enhanced LXR; C8 failed to activate LXR or alter methylation. Functionally, C1 attenuated IL-1β, IL-6 and GM-CSF while increasing IL-10 and certain chemokines. C4 elicited an intermediate pattern, inducing CX3CL1 (fractalkine), CCL20, VEGF-A and TIMP-1 with minor effects on classical cytokines. In contrast, C8 triggered a robust pro-inflammatory phenotype, increasing IL-1α/β, TNF-α and GM-CSF, with higher IL-10, fractalkine, CCL20, VEGF-A and TIMP-1. All isomers suppressed IFN-γ, IL-4 and CNTF. These data indicate that MBP post-translational modifications drive distinct astrocyte phenotypes through integrated cytokine, metabolic and epigenetic pathways: C1 favours immune regulation and repair, C4 blends inflammatory and reparative cues, and C8 amplifies neuroinflammation. Understanding how modified MBP shapes astrocyte behaviour provides mechanistic insight into lesion evolution in MS and suggests astrocyte-directed strategies to modulate neuroinflammation and promote remyelination.
Multiple sclerosis (MS) pathogenesis involves not only immune-mediated myelin injury but also glial responses. We examined how three charge isomers of myelin basic protein (MBP)—native (C1), phosphorylated (C4), and citrullinated (C8)—modulate rat astrocytes. Cytokines were quantified and grouped (pro/anti-inflammatory, chemotactic, neurotrophic, angiogenic, tissue remodeling), and regulatory markers assessed. C1 strongly upregulated the lipid-sensing receptor LXR, and reduced global DNA methylation; C4 moderately enhanced LXR; C8 failed to activate LXR or alter methylation. Functionally, C1 attenuated IL-1β, IL-6 and GM-CSF while increasing IL-10 and certain chemokines. C4 elicited an intermediate pattern, inducing CX3CL1 (fractalkine), CCL20, VEGF-A and TIMP-1 with minor effects on classical cytokines. In contrast, C8 triggered a robust pro-inflammatory phenotype, increasing IL-1α/β, TNF-α and GM-CSF, with higher IL-10, fractalkine, CCL20, VEGF-A and TIMP-1. All isomers suppressed IFN-γ, IL-4 and CNTF. These data indicate that MBP post-translational modifications drive distinct astrocyte phenotypes through integrated cytokine, metabolic and epigenetic pathways: C1 favours immune regulation and repair, C4 blends inflammatory and reparative cues, and C8 amplifies neuroinflammation. Understanding how modified MBP shapes astrocyte behaviour provides mechanistic insight into lesion evolution in MS and suggests astrocyte-directed strategies to modulate neuroinflammation and promote remyelination.
Posted: 12 December 2025
From Acute Stress to Long-Term Dysregulation: Changes in Hematological and Hormonal Parameters in the Long-Term Post-Stress Period in a Modified SPS&S Model
Darya I. Gonchar
,Tatiana Anatolievna Shmigol
,Dmitri N. Lyakhmun
,Aleksandra Soloveva
,Svetlana Kirillovna Yankovskaya
,Olga Vasilievna Krendeleva
,Veriko Dmitrievna Vizgalina
,Ekaterinaa Vladimirovn Efimova
,Aiarpi A. Ezdoglian
,Nina M. Kiseleva
+1 authors
Existing animal models of post-traumatic stress disorder (PTSD) are often methodologically complex and produce variable outcomes. The aim of this study was to develop a modified PTSD model that accurately recapitulates the clinical progression of the disorder incorporating both behavioral features and objective physiological parameters. We utilized a modified Single Prolonged Stress with Subsequent Stress (SPS&S) protocol, supplemented by a stress reminder phase (without re-exposure to primary stressors) and an evaluation of stress response extinction. Eighty Wistar rats were subjected to the stress protocol, followed by comprehensive behavioral, hematological (leukocytes, hemoglobin, hematocrit), and hormonal (corticosterone, ACTH) assessments 4-5 weeks post-stress. The model produced a PTSD-like phenotype in 25% of animals, characterized by persistent alterations in the investigated biomarkers. The PTSD group exhibited sustained behavioral impairments (increased anxiety), hematological changes (neutrophilic leukocytosis), and endocrine dysregulation (decreased corticosterone, ACTH, and epinephrine). This modified SPS&S model demonstrates validity for studying the long-term consequences of stress, with PTSD markers remaining stable throughout the 28-day observation period.
Existing animal models of post-traumatic stress disorder (PTSD) are often methodologically complex and produce variable outcomes. The aim of this study was to develop a modified PTSD model that accurately recapitulates the clinical progression of the disorder incorporating both behavioral features and objective physiological parameters. We utilized a modified Single Prolonged Stress with Subsequent Stress (SPS&S) protocol, supplemented by a stress reminder phase (without re-exposure to primary stressors) and an evaluation of stress response extinction. Eighty Wistar rats were subjected to the stress protocol, followed by comprehensive behavioral, hematological (leukocytes, hemoglobin, hematocrit), and hormonal (corticosterone, ACTH) assessments 4-5 weeks post-stress. The model produced a PTSD-like phenotype in 25% of animals, characterized by persistent alterations in the investigated biomarkers. The PTSD group exhibited sustained behavioral impairments (increased anxiety), hematological changes (neutrophilic leukocytosis), and endocrine dysregulation (decreased corticosterone, ACTH, and epinephrine). This modified SPS&S model demonstrates validity for studying the long-term consequences of stress, with PTSD markers remaining stable throughout the 28-day observation period.
Posted: 12 December 2025
First Computational Characterization of HTR5A-AS1: A Schizophrenia-Linked Antisense RNA with Synaptic Functions
Grant H. Ruttenberg
Posted: 11 December 2025
Endocannabinoids Modulate Olfactory System Development and Function
Thomas Heinbockel
,Edward A. Brown
Posted: 11 December 2025
Parametric Resonance, Arithmetic Geometry, and Adelic Topology of Microtubules: A Bridge to Orch OR Theory
Michel Planat
Posted: 09 December 2025
Peroxiredoxin 6 Modulates Mitochondrial Function and Mitophagy in PINK1-Deficient Cells Under Oxidative Stress
Kristina Kritskaya
,Alexey Berezhnov
,Mars Sharapov
,Valentina Maltseva
,Evgenia Fedotova
Posted: 08 December 2025
Therapeutic Potential Target of Adenosine for Epilepsy from Bench to Bed: Interaction with the Molecular Epileptogenic Network
Xiaoning Zhao
,Jiahui Deng
,Zhonghua Xiong
,Tianfu Li
Posted: 08 December 2025
Modelling the Gut-Bain Axis in Neurodegeneration: A Comprehensive Review of Organoids and Organ-on-Chip Systems
Ayan Dharod
According to the World Health Organisation (WHO), conditions linked to the brain account for 28% of the social burden of all diseases, the largest sector, surpassing cancer and cardiovascular disease (CVD). Our incomplete understanding of human neurodegeneration biology is at the center of the devastating impacts it brings on our societies. A fundamental translational effect in those therapies is evident in that none have succeeded in registration-sized clinical trials. The outcome are coexisting therapies that remain largely palliative, managing symptoms or slowing decline but not providing hope for a reversal or cure. Increasing evidence has positioned the gut-brain axis (GBA) as a key modulator of neurodegeneration hallmarks, often inducing or progressing disorders such as Alzheimer’s, Parkinson’s and Multiple Sclerosis. Traditional research tools fail to recapitulate the accurate physiology of organ systems in humans, leading to the development of organoid technologies and organ-on-a-chip platforms. This literature review comprehensively analyses efforts to model neurodegenerative disorders through in vitro models, evaluating advancements in intestinal, cerebral, GBA, blood-brain barrier and other multi-organ systems. Further, the paper ties back to the known pathophysiology of such diseases and the GBA’s influence to evaluate limitations of current disease modelling approaches, offering future directions that enable applications in drug discovery. These technologies mark a transformative shift in methods to understand both the mechanistic causation and therapeutic strategies for previously incurable diseases, expanding the possibilities to improve the lives of millions of diagnosed patients.
According to the World Health Organisation (WHO), conditions linked to the brain account for 28% of the social burden of all diseases, the largest sector, surpassing cancer and cardiovascular disease (CVD). Our incomplete understanding of human neurodegeneration biology is at the center of the devastating impacts it brings on our societies. A fundamental translational effect in those therapies is evident in that none have succeeded in registration-sized clinical trials. The outcome are coexisting therapies that remain largely palliative, managing symptoms or slowing decline but not providing hope for a reversal or cure. Increasing evidence has positioned the gut-brain axis (GBA) as a key modulator of neurodegeneration hallmarks, often inducing or progressing disorders such as Alzheimer’s, Parkinson’s and Multiple Sclerosis. Traditional research tools fail to recapitulate the accurate physiology of organ systems in humans, leading to the development of organoid technologies and organ-on-a-chip platforms. This literature review comprehensively analyses efforts to model neurodegenerative disorders through in vitro models, evaluating advancements in intestinal, cerebral, GBA, blood-brain barrier and other multi-organ systems. Further, the paper ties back to the known pathophysiology of such diseases and the GBA’s influence to evaluate limitations of current disease modelling approaches, offering future directions that enable applications in drug discovery. These technologies mark a transformative shift in methods to understand both the mechanistic causation and therapeutic strategies for previously incurable diseases, expanding the possibilities to improve the lives of millions of diagnosed patients.
Posted: 05 December 2025
Epigenetic Dysregulation in Rett Syndrome: Multisystem Pathophysiology, MECP2 Isoform-Specific Mechanisms, and Targeted Therapeutic Strategies
S.T. Gopukumar
,Madhumita Saha
,Sahil Bhardwaj
,Kesavaperumal Gopalakrishnan
,Tanveen Kaur Soni
,Samer Shamshad
,Uddalak Das
Posted: 05 December 2025
Consciousness Is Evolution in Real Time: A Deterministic Accessibility Account
Salar Yousefzadeh
Posted: 05 December 2025
Neuromodulatory Fragility Is an Upstream Breakpoint for Alzheimer’s Disease Pathogenesis
Alfie Wearn
,Kate M. Onuska
,Taylor W. Schmitz
,Gary R. Turner
,R. Nathan Spreng
Sporadic Alzheimer’s disease (AD) is associated with numerous risk factors, yet its precise cause remains unclear. Here, we describe a novel framework for AD pathogenesis, whereby diverse risk factors converge on neuromodulatory subcortical systems to confer AD risk or resilience. Neuromodulatory projection neurons are uniquely fragile due to their large size, sparse myelination, and high basal metabolic demands. We propose that the increased prevalence of AD in older adult populations likely reflects a universal weakness within these projection systems, which is increasingly exposed as cellular transport and maintenance mechanisms deteriorate with age. The key insight of this ‘neuromodulatory fragility framework’ is that neuromodulatory system dysfunction is sufficient to explain both tau hyperphosphorylation and b-amyloid (Ab) plaque formation, the two pathological hallmarks of AD. We therefore predict that strengthening or preserving the endogenous functions of these systems in midlife represents the most effective strategy for preventing AD.
Sporadic Alzheimer’s disease (AD) is associated with numerous risk factors, yet its precise cause remains unclear. Here, we describe a novel framework for AD pathogenesis, whereby diverse risk factors converge on neuromodulatory subcortical systems to confer AD risk or resilience. Neuromodulatory projection neurons are uniquely fragile due to their large size, sparse myelination, and high basal metabolic demands. We propose that the increased prevalence of AD in older adult populations likely reflects a universal weakness within these projection systems, which is increasingly exposed as cellular transport and maintenance mechanisms deteriorate with age. The key insight of this ‘neuromodulatory fragility framework’ is that neuromodulatory system dysfunction is sufficient to explain both tau hyperphosphorylation and b-amyloid (Ab) plaque formation, the two pathological hallmarks of AD. We therefore predict that strengthening or preserving the endogenous functions of these systems in midlife represents the most effective strategy for preventing AD.
Posted: 05 December 2025
The Impact of Hemichannel-Mediated Neuroinflammation at Early Stages of CNS Ontogeny in the Development of Adult Neuropsychiatric Diseases
Francisco J. Ocaranza
,Juan Carlos Saez
In pathological conditions, elevated activity of connexin and pannexin hemichannels facilitates Adenosine triphosphate (ATP) efflux and Ca2+ influx, activating metabolic pathways of neuroinflammation. While a small insult could result in a protective inflammatory response, more intense and/or prolonged insults induce cell death, causing tissue dysfunction. In the brain, different stressors elevate glucocorticoid (GC) levels that are sensed by mast cells and microglia, and this response persists for a long time, causing continuous inflammasome activation and release of IL-1β and IL-18. These proinflammatory cytokines, together with those released by mast cells, activate astrocytes and oligodendrocytes, which in turn release glutamate and ATP, and altogether reduce neuronal functionality and survival. The extent of neuroinflammation also depends on host features that result in different degrees of alterations during brain ontogeny, consequently changing the brain cytoarchitecture and leading to spectrums of behavioral diseases. Selective hemichannel blockers have been recently discovered and shown to reduce neuroinflammation, as well as neuronal suffering and symptoms linked to adult models of depression and epilepsy. These blockers can serve as tools to dissect the role of neuroinflammation in behavioral diseases. Early treatment during brain ontogeny could reduce detrimental impacts on the brain cytoarchitecture, inducing behavioral alterations elicited in adulthood.
In pathological conditions, elevated activity of connexin and pannexin hemichannels facilitates Adenosine triphosphate (ATP) efflux and Ca2+ influx, activating metabolic pathways of neuroinflammation. While a small insult could result in a protective inflammatory response, more intense and/or prolonged insults induce cell death, causing tissue dysfunction. In the brain, different stressors elevate glucocorticoid (GC) levels that are sensed by mast cells and microglia, and this response persists for a long time, causing continuous inflammasome activation and release of IL-1β and IL-18. These proinflammatory cytokines, together with those released by mast cells, activate astrocytes and oligodendrocytes, which in turn release glutamate and ATP, and altogether reduce neuronal functionality and survival. The extent of neuroinflammation also depends on host features that result in different degrees of alterations during brain ontogeny, consequently changing the brain cytoarchitecture and leading to spectrums of behavioral diseases. Selective hemichannel blockers have been recently discovered and shown to reduce neuroinflammation, as well as neuronal suffering and symptoms linked to adult models of depression and epilepsy. These blockers can serve as tools to dissect the role of neuroinflammation in behavioral diseases. Early treatment during brain ontogeny could reduce detrimental impacts on the brain cytoarchitecture, inducing behavioral alterations elicited in adulthood.
Posted: 04 December 2025
Distinct Role of γ-Synuclein in the Regulation of Motor Performance and Behavioral Responses in Mice
Iuliia S. Sukhanova
,Kirill D. Chaprov
,Olga A. Morozova
,Ruslan K. Ovchinnikov
,Olga A. Kukharskaya
,Valeria N. Zalevskaya
,Nadezhda M. Yusupova
,Anastasia A. Lugovskaya
,Natalia N. Ninkina
,Michail S. Kukharsky
Posted: 04 December 2025
Cell Motility Dynamics in Glaucoma: Mechanisms, Pathogenic Roles, and Therapeutic Targeting
Dario Rusciano
,Caterina Gagliano
,Alessandro Avitabile
,José Fernando Maya-Vetencourt
Cell motility—the dynamic process encompassing migration, adhesion modulation, cytoskeletal remodeling, and extracellular matrix (ECM) interactions—is fundamental to ocular homeostasis. In glaucoma, disrupted motility of trabecular meshwork (TM) and Schlemm’s canal (SC) cells contributes to impaired aqueous humor outflow and elevated intraocular pressure (IOP), while reactive motility of optic nerve head (ONH) glial cells promotes fibrosis and neurodegeneration. Mechanistically, TM/SC motility is regulated by Rho GTPase and ROCK signaling, focal adhesion dynamics, and ECM interactions, while glial cells respond to mechanical stress and cytokines such as TGF-β2. Cytoskeletal alterations, ECM stiffening, and endothelial–mesenchymal transition (EndMT) contribute to glaucomatous damage by reducing normal cell motility and tissue remodeling capacity. Aberrant motility at the ONH, including heterogeneous astrocytic reactivity, leads to lamina cribrosa remodeling and retinal ganglion cell degeneration. Therapeutically, ROCK inhibitors improve TM/SC motility and outflow, suppress EndMT, and may confer neuroprotection. Stem cell–based strategies and modulation of TGF-β2 or mechanotransduction pathways represent emerging approaches to restore physiological motility and regenerative potential. Despite promising advances, challenges remain in ensuring targeted, durable, and safe modulation of cellular dynamics. Understanding and therapeutically harnessing cell motility offers a unifying framework to address both pressure-dependent and neurodegenerative mechanisms in glaucoma.
Cell motility—the dynamic process encompassing migration, adhesion modulation, cytoskeletal remodeling, and extracellular matrix (ECM) interactions—is fundamental to ocular homeostasis. In glaucoma, disrupted motility of trabecular meshwork (TM) and Schlemm’s canal (SC) cells contributes to impaired aqueous humor outflow and elevated intraocular pressure (IOP), while reactive motility of optic nerve head (ONH) glial cells promotes fibrosis and neurodegeneration. Mechanistically, TM/SC motility is regulated by Rho GTPase and ROCK signaling, focal adhesion dynamics, and ECM interactions, while glial cells respond to mechanical stress and cytokines such as TGF-β2. Cytoskeletal alterations, ECM stiffening, and endothelial–mesenchymal transition (EndMT) contribute to glaucomatous damage by reducing normal cell motility and tissue remodeling capacity. Aberrant motility at the ONH, including heterogeneous astrocytic reactivity, leads to lamina cribrosa remodeling and retinal ganglion cell degeneration. Therapeutically, ROCK inhibitors improve TM/SC motility and outflow, suppress EndMT, and may confer neuroprotection. Stem cell–based strategies and modulation of TGF-β2 or mechanotransduction pathways represent emerging approaches to restore physiological motility and regenerative potential. Despite promising advances, challenges remain in ensuring targeted, durable, and safe modulation of cellular dynamics. Understanding and therapeutically harnessing cell motility offers a unifying framework to address both pressure-dependent and neurodegenerative mechanisms in glaucoma.
Posted: 03 December 2025
From Stress to Substance Use Disorders: The Expanding Role of Microglia-Astrocytes Cross-Talk in Neuroimmune and Glutamate Alterations in the Nucleus Accumbens
Liliana Marina Cancela
,Bethania Mongi-Bragato
,María Paula Avalos
,Flavia Andrea Bollati
Posted: 03 December 2025
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