ARTICLE
|
doi:10.20944/preprints202003.0267.v1
Subject:
Chemistry And Materials Science,
Physical Chemistry
Keywords:
COVID-19; SARS-CoV-2; RNA-dependent RNA polymerase (RdRp); remdesivir; homology model; molecular dynamics; free energy perturbation
Online: 17 March 2020 (04:07:15 CET)
ARTICLE
|
doi:10.20944/preprints202002.0061.v1
Subject:
Medicine And Pharmacology,
Medicine And Pharmacology
Keywords:
Coronavirus; Deep learning; Drug screening; homology modeling; main protease
Online: 5 February 2020 (10:59:09 CET)
ARTICLE
Subject:
Biology And Life Sciences,
Virology
Keywords:
Sars-CoV-2; homology modelling; envelope membrane glycoprotein; Bat; Pangolin; Sars-CoV
Online: 9 May 2020 (08:43:08 CEST)
ARTICLE
|
doi:10.20944/preprints202005.0407.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
SARS-CoV-2; spike protein; D614G mutation; genotype distribution; furin cleavage site; secondary structure; sequence analysis; homology modeling
Online: 24 May 2020 (20:31:16 CEST)
ARTICLE
|
doi:10.20944/preprints201701.0040.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Sarcocystis neurona; EPM; docking; apicomplexans; phylogeny; homology modeling
Online: 9 January 2017 (05:19:32 CET)
ARTICLE
|
doi:10.20944/preprints201901.0198.v1
Subject:
Computer Science And Mathematics,
Information Systems
Keywords:
Dark Proteome, Molecular Structure, Homology Modelling
Online: 21 January 2019 (08:50:48 CET)
ARTICLE
|
doi:10.20944/preprints202007.0132.v1
Subject:
Biology And Life Sciences,
Biology And Biotechnology
Keywords:
coronavirus; spike protein; database; sequence alignment; mutation; homology model; hydrophobic amino acids
Online: 7 July 2020 (16:49:04 CEST)
REVIEW
|
doi:10.20944/preprints202008.0516.v1
Subject:
Medicine And Pharmacology,
Epidemiology And Infectious Diseases
Keywords:
Coronavirus, sequence homology, transmission, virology, diagnosis, virus control, vaccination.
Online: 24 August 2020 (09:31:38 CEST)
ARTICLE
|
doi:10.20944/preprints201908.0320.v2
Subject:
Computer Science And Mathematics,
Signal Processing
Keywords:
Electrocardiography Analysis; Persistence Landscape; Signal Analysis; Machine Learning; Topological Data Analysis; Topological Signal Signature; Classification; Time Series Analysis; Biomedical Signal Analysis; Persistence Homology
Online: 2 August 2023 (10:33:09 CEST)
ARTICLE
|
doi:10.20944/preprints201805.0234.v1
Subject:
Biology And Life Sciences,
Cell And Developmental Biology
Keywords:
non-coding RNA; telomerase RNA; secondary structure; synteny; homology search; yeast
Online: 16 May 2018 (11:58:28 CEST)
ARTICLE
|
doi:10.20944/preprints202009.0006.v2
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
COVID-19; SARS-CoV-2; protein design; complementarity; competitive inhibitor; homology-based threading in rational protein design
Online: 4 March 2021 (10:14:39 CET)
ARTICLE
|
doi:10.20944/preprints201811.0310.v1
Subject:
Medicine And Pharmacology,
Pathology And Pathobiology
Keywords:
tessellation; forensic picture; bullets; homology; proximity
Online: 13 November 2018 (10:41:14 CET)
REVIEW
|
doi:10.20944/preprints202101.0626.v1
Subject:
Biology And Life Sciences,
Anatomy And Physiology
Keywords:
BTB and CNC homology 1 BACH1; mitochondrial metabolism; glycolysis; heme oxygenase 1 (HMOX1); mitochondrial electron transport chain (ETC); Nrf2 (encoded by Nfe2l2); metformin; hemin; breast cancer; lung cancer
Online: 29 January 2021 (13:57:41 CET)
ARTICLE
|
doi:10.20944/preprints201809.0466.v1
Subject:
Computer Science And Mathematics,
Information Systems
Keywords:
topological data analysis; text mining; computational topology; style; persistent homology
Online: 24 September 2018 (15:33:02 CEST)
ARTICLE
|
doi:10.20944/preprints201902.0160.v1
Subject:
Computer Science And Mathematics,
Computer Science
Keywords:
holes; grid; shapes; homology; uncertainty
Online: 18 February 2019 (10:49:02 CET)
ARTICLE
|
doi:10.20944/preprints202012.0281.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
covid-19; drug repurposing; topological data analysis; persistent homology
Online: 11 December 2020 (12:57:28 CET)
CONCEPT PAPER
|
doi:10.20944/preprints202106.0578.v1
Subject:
Biology And Life Sciences,
Animal Science, Veterinary Science And Zoology
Keywords:
homology; developmental mechanism; evidential integration; eumetazoan body plan; phylogenetics
Online: 23 June 2021 (11:45:06 CEST)
ARTICLE
|
doi:10.20944/preprints202008.0470.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Amyotrophic Lateral Sclerosis (ALS); Fronto-Temporal-Lobar-Dementia; Tauopathies; synaptic plasticity; long-term potentiation; spatial learning; inositol signaling; neurexin; K-homology RNA-binding domain; Fragile-X-associated Tremor-Ataxia syndrome
Online: 21 August 2020 (04:39:19 CEST)
ARTICLE
|
doi:10.20944/preprints201807.0085.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
CagA; phosphatidylserine; phosphatidylserine mutations; conservation N-terminal CagA; homology modeling; molecular docking
Online: 5 July 2018 (08:34:40 CEST)
CONCEPT PAPER
|
doi:10.20944/preprints202005.0182.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
Coronavirus Nsp proteins; ribosomal proteins homology; inhibition of ribosome turn over; rRNA methyltransferase; protein synthesis inhibition; low ATP formation; blood clotting; low blood pressure and coma
Online: 10 May 2020 (18:14:55 CEST)
REVIEW
|
doi:10.20944/preprints202204.0156.v1
Subject:
Biology And Life Sciences,
Biophysics
Keywords:
nanovesicles; flow; homology; vortex; Betti number; Borsuk–Ulam theorem
Online: 18 April 2022 (06:14:33 CEST)
ARTICLE
|
doi:10.20944/preprints202011.0446.v1
Subject:
Chemistry And Materials Science,
Medicinal Chemistry
Keywords:
Alkaloids; Anti-Onchocercal; Bisindoles; Docking; Homology Modeling; Monoindoles.
Online: 17 November 2020 (11:13:54 CET)
ARTICLE
|
doi:10.20944/preprints201812.0184.v1
Subject:
Computer Science And Mathematics,
Mathematical And Computational Biology
Keywords:
Metagenomics; Metatranscriptomics; Environmental sample; Homology searches; Taxonomic profile; Functional profile
Online: 17 December 2018 (09:51:22 CET)
ARTICLE
|
doi:10.20944/preprints201911.0366.v1
Subject:
Computer Science And Mathematics,
Computational Mathematics
Keywords:
neural networks; topology; directed graphs; directed flag complexes; persistent homology; computaional software
Online: 29 November 2019 (03:03:36 CET)
ARTICLE
|
doi:10.20944/preprints202107.0191.v1
Subject:
Computer Science And Mathematics,
Algebra And Number Theory
Keywords:
topology; simplicial complex; homology; Mayer-Vietoris sequence; RNA; secondary structure
Online: 8 July 2021 (10:43:11 CEST)
ARTICLE
|
doi:10.20944/preprints201912.0069.v1
Subject:
Computer Science And Mathematics,
Computational Mathematics
Keywords:
statistical mirroring; genomic mirrors; comparative optinalysis; multiple comparison; inferences; homology
Online: 5 December 2019 (11:36:25 CET)
ARTICLE
|
doi:10.20944/preprints201912.0374.v1
Subject:
Biology And Life Sciences,
Biophysics
Keywords:
alpha-fetoprotein; estrogens; selective estrogen receptor modulators; homology-based modeling; molecular docking; protein-ligand interaction; amino acid substitutions
Online: 29 December 2019 (08:08:23 CET)
ARTICLE
|
doi:10.20944/preprints202206.0201.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
human coronaviruses; envelope protein; PDZ-binding motif (PBM), homology-based modelling; docking; HADDOCK; protein-protein interaction; PALS1; pathogenesis; SARS-CoV-2
Online: 14 June 2022 (09:52:47 CEST)
ARTICLE
|
doi:10.20944/preprints202111.0108.v1
Subject:
Chemistry And Materials Science,
Medicinal Chemistry
Keywords:
Plasmodium; malaria; type III beta phosphatidylinositol 4-kinase; virtual screening; homology modeling; molecular dynamics
Online: 5 November 2021 (08:44:31 CET)
ARTICLE
|
doi:10.20944/preprints201912.0083.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
hydrogenases; hydrogen fuel cells; homology modeling; fes clusters; transmembrane helices; molecular docking; molecular tunnels
Online: 6 December 2019 (11:47:06 CET)
ARTICLE
|
doi:10.20944/preprints202003.0068.v1
Subject:
Computer Science And Mathematics,
Geometry And Topology
Keywords:
Tournaments; Semi-Simplicial Sets; Neural networks; Persistent homology
Online: 4 March 2020 (11:40:12 CET)
ARTICLE
|
doi:10.20944/preprints202306.0194.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
insect viruses; arthropod virus; distant homology detection; remote homology detection; virulence factor; tospovirus; structure prediction; cypovirus; small protrusion domain
Online: 2 June 2023 (11:45:35 CEST)
ARTICLE
|
doi:10.20944/preprints202301.0093.v1
Subject:
Computer Science And Mathematics,
Artificial Intelligence And Machine Learning
Keywords:
Variational Auto-Encoder; topological machine learning; nonlinear dimensionality reduction; Topological Data Analysis; data visualization; representation learning; Betti number; persistence homology; simplicial complex; simplicial regularization
Online: 5 January 2023 (02:47:49 CET)
REVIEW
|
doi:10.20944/preprints202312.0260.v1
Subject:
Computer Science And Mathematics,
Applied Mathematics
Keywords:
topological data analysis; cardiovascular signals; alegbraic topology; persistent homology; mapper algorithm
Online: 5 December 2023 (11:00:09 CET)
ARTICLE
|
doi:10.20944/preprints202310.0396.v1
Subject:
Biology And Life Sciences,
Life Sciences
Keywords:
Pyrimidine; Homology Modelling; Pharmacophore Mapping; 3D-QSAR; Molecular Docking; ADMET; Drug Design
Online: 9 October 2023 (09:36:05 CEST)
ARTICLE
|
doi:10.20944/preprints202312.1043.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
ARHGAP12; GRB2; NCK1; proline-rich motifs; protein-protein interaction; SH3 domain; signal transduction; SOS1; SRC homology 3; WRCH1/RHOU.
Online: 14 December 2023 (05:54:01 CET)
ARTICLE
|
doi:10.20944/preprints202209.0283.v1
Subject:
Medicine And Pharmacology,
Veterinary Medicine
Keywords:
Wolinella; Virulence genes; Helicobacter pylori; genomic homology
Online: 20 September 2022 (02:06:43 CEST)
ARTICLE
|
doi:10.20944/preprints202309.2178.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
leucyl-aminopeptidase; Bacillus cereus; expression; homology modeling; molecular docking
Online: 2 October 2023 (11:18:37 CEST)
Subject:
Life Sciences,
Biology And Life Sciences
Keywords:
convergent evolution, genetic toolkit, deep homology, vision, eyes, metaphor
Online: 19 April 2024 (08:17:22 CEST)