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Engineering, Biomedical & Chemical Engineering; blood pressure; oscillometric measurement; statistical analysis; normality; confidence interval; deep belief networks
Online: 21 May 2018 (12:54:26 CEST)
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Oscillometric blood pressure (BP) devices currently estimate a single point but do not identify fluctuations in BP or distinguish them from variations in response to physiological properties. In this paper, to analyze BP normality based on oscillometric measurements, we use statistical approaches including kurtosis, skewness, Kolmogorov-Smirnov, and correlation tests. Then, to mitigate uncertainties, we use a deep neural network (DNN) to determine the confidence limits (CLs) of BP measurements based on their normality. The proposed DNN regression model decreases the standard deviation of error (SDE) of the mean error (ME) and the mean absolute error (MAE) and reduces the uncertainty of the CLs and SDEs of the proposed technique. We validate the normality of the distribution of the BP estimation distribution which fits the Gaussian distribution very well. We use a rank test in the DNN regression model to demonstrate the independence of the artificial SBP and DBP estimations. First, we perform statistical tests to verify the normality of the BP measurements for individual subjects. The proposed methodology provides accurate BP estimations and reduces the uncertainties associated with the CLs and SDEs based on the DNN regression estimator.
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Engineering, Biomedical & Chemical Engineering; VCM suspension polymerization, initiator mixtures, molecular characteristics, morphological properties
Online: 10 May 2018 (13:11:48 CEST)
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Molecular and morphological properties of poly(vinyl chloride) grains produced by suspension polymerization of VCM in the presence of a mixture of three kind of initiators (i.e. fast, mild and slow) (named as Cok process) was experimentally investigated in a pilot-scale reactor. The results obtained here were initially compared with a isothermal regular process (named as control process) and then with those obtained already for other productivity-enhancing polymerization techniques (i.e. nonisothermal and fast initiator dosage process). The results showed that, in contrast to nonisothermal and fast initiator dosage process, the addition of initators mixture at the beginning of the reaction has the smallest influence on molecular weight and polydispersity index compared to control process. It is obvioused that Cok-PVC grains have the lowest cold plasticizer absorption and porosity among these mentioned processes. Scanning electron microscopy (SEM) showed that the particles produced by Cok process are more regularly shaped, with a smoother surface compared with the control product. According to the literatures, all three productivity-enhancing techniques lead to an apparent quality enhancement, higher flowability and greater bulk density of final grains. While both processes of continous initiator dosage and nonisothermal polymerization broaden the particle size distribution of final PVC grains, applying initiator mixture produces particles with the same particle size distribution as control process. The SEM images processing showed that Cok process deccelerates the formation of a three-dimensional skeleton of primary particles relative to the control polymerization. In comparison with nonisothermal trajectory and continous fast initiator dosage system, the Cok polymerization process leads to the most delay of motionless conversions and fusion time as well.
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Engineering, Biomedical & Chemical Engineering; Core-shell nanoparticles; Optimization; Surface properties; Perfluorosilyl methacrylate
Online: 8 May 2018 (15:15:15 CEST)
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In this study, the coating order of two monomers in the shell polymerization process of core–shell nanoparticles was altered to facilitate easy coating and optimize the properties of the coated surface to simplify the additional coating formulation process. To obtain a glass transition temperature suitable for coating, a core was synthesized by the copolymerization of an acryl monomer. A perfluoro monomer and silane monomer were additionally added to synthesize nanoparticles exhibiting both water–oil repellency and anchoring properties. In order to realize various surface properties, the nanoparticles underwent surface modification and cellulose fiber was introduced. Through the various data described in this text, the surface properties improved with the order of introduction of the two monomers.
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Engineering, Biomedical & Chemical Engineering; aerosols; Particulate Matter (PM); PM2.5; nanoparticles; toxicity; source; Organ-on-a-Chip (OoC)
Online: 1 May 2018 (09:54:13 CEST)
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The air is not the same as thousands and hundreds of years ago. In the air, suspended particles originate from natural phenomena like dust storms or volcanic activities, as well as anthropogenic pollutants such as fuel engine exhaust and everyday activities at home. The total particles in the air can be classified by sizes, such as PM10, PM2.5 or ultrafine particles. However, there are many other important factors in addition to the particle size, influencing the particle behavior and affecting our health. The surface area, chemical and biological composition, aspect ratio, and the charge are all factors characteristic of particles. OoC microfluidic chips are very useful for the pollutant toxicity measurements on various body tissues. A better understanding of pollutants will help to trace these to the potential sources. The data from the on-the-ground and satellite monitoring can be integrated into models, helping to predict and prevent pollution exposure.
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Engineering, Biomedical & Chemical Engineering; network inference; data integration; regulatory networks; transcription factor; gene expression
Online: 27 April 2018 (06:34:12 CEST)
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Data generation using high throughput technologies has led to the accumulation of diverse types of molecular data.These data have different types (discrete,real,string etc.) and occur in various formats and sizes. Datasets including gene expression, miRNA expression, protein-DNA binding data (ChIP-Seq/ChIP-ChIP), mutation data(copy number variation, single nucleotide polymorphisms), GO annotations, protein-protein interaction and disease-gene association data are some of the commonly used genomic datasets to study biological processes. Each of them provides a unique, complementary and partly independent view of the genome and hence embed essential information about their regulatory mechanisms. In order to understand the functions of genes, proteins and analyze mechanisms arising out of their interactions, information provided by each of these datasets individually may not be sufficient. Therefore integrating these multi-omic data and inferring regulatory interactions from the integrated dataset provides a system level biological insights in predicting gene functions and their phenotypic outcomes. To study genome functionality through interaction networks, different methods have been proposed for collective mining of information from an integrated dataset. We survey here data integration approaches using state-of-the-art techniques such as network integration, Bayesian networks, regularized regression (LASSO) and multiple kernel learning methods.
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Engineering, Biomedical & Chemical Engineering; respiratory sinus arrhythmia (RSA); R-peak amplitude (RPA); QRS amplitude
Online: 29 March 2018 (05:17:58 CEST)
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We propose an electrocardiogram (ECG) signal-based algorithm to estimate the respiratory rate is a significant informative indicator of physiological state of a patient. The consecutive ECG signals reflect the information about the respiration because inhalation and exhalation make transthoracic impedance vary. The proposed algorithm extracts the respiration-related signal by finding out the commonality between the frequency and amplitude features in the ECG pulse train. The respiration rate can be calculated from the principle components after the procedure of the singular spectrum analysis. We achieved 1.7569 breaths per min of root-mean-squared error and 1.7517 of standard deviation with a 32-seconds signal window of the Capnobase dataset, which gives notable improvement compared with the conventional Autoregressive model based estimation methods.
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Engineering, Biomedical & Chemical Engineering; metabolic strain design; heuristic optimization; constraint-based modeling
Online: 27 March 2018 (05:55:32 CEST)
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To date, several independent methods and algorithms exist exploiting constraint-based stoichiometric models to find metabolic engineering strategies that optimize microbial production performance. Optimization procedures based on metaheuristics facilitate a straightforward adaption and expansion of engineering objectives as well as fitness functions, while being particularly suited for solving problems of high complexity. With the increasing interest in multi-scale models and a need for solving advanced engineering problems, we strive to advance genetic algorithms, which stand out due to their intuitive optimization principles and proven usefulness in this field of research. A drawback of genetic algorithms is that premature convergence to sub-optimal solutions easily occurs if the optimization parameters are not adapted to the specific problem. Here, we conducted comprehensive parameter sensitivity analyses to study their impact on finding optimal strain designs. We further demonstrate the capability of genetic algorithms to simultaneously handle (i) multiple, non-linear engineering objectives, (ii) the identification of gene target-sets according to logical gene-protein-reaction associations, (iii) minimization of the number of network perturbations, and (iv) the insertion of non-native reactions, while employing genome-scale metabolic models. This framework adds a level of sophistication in terms of strain design robustness, which is exemplarily tested on succinate overproduction in Escherichia coli.
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Aarón Cruz-Ramírez,
Raúl Sánchez-Olvera,
Diego Zamarrón-Hernández,
Mathieu Hautefeuille,
Lucia Cabriales,
Edgar Jiménez-Díaz,
Beatriz Díaz-Bello,
Jehú López-Aparicio,
Daniel Pérez-Calixto,
Mariel Cano-Jorge,
Genaro Vázquez-Victorio
Engineering, Biomedical & Chemical Engineering; laser micromachining; scaffold; biomimetics; microadditive manufacturing; microsubtractive manufacturing
Online: 23 March 2018 (08:00:52 CET)
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The development of organ-on-chip and biological scaffolds is currently requiring simpler methods to microstructure biocompatible materials in three dimensions, fabricate structural and functional elements in biomaterials or modify the physicochemical properties of desired substrates. Aiming at addressing this need, a low-power CD-DVD-Blu-ray laser pickup head was mounted on a programmable three-axis micro-displacement system in order to modify the surface of polymeric materials in a local fashion. Thanks to a specially-designed method using a strongly absorbing additive coating the materials of interest, it has been possible to establish and precisely control processes useful in microtechnology for biomedical applications. The system was upgraded with blu-ray laser for additive manufacturing and ablation on a single platform. In this work, we present the application of these fabrication techniques to the development of biomimetic cellular culture platforms thanks to the simple integration of several features typically achieved with traditional, less cost-effective microtechnology methods in one step or through replica-molding. Our straightforward approach indeed enables great control of local laser microablation or polymerization for true on-demand biomimetic micropatterned designs in transparent polymers and hydrogels and is allowing integration of microfluidics, microelectronics, surface microstructuring and transfer of superficial protein micropatterns on a variety of biocompatible materials.
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Engineering, Biomedical & Chemical Engineering; moments invariants; ZM,PZM; OFMM; SVM; PSO
Online: 16 March 2018 (05:26:31 CET)
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This paper provides orthogonal moments (OM) such as, Zernike Moments(ZM), Psuedo Zernike Moments(PZM) and Orthogonal Fourier Mellin Moments(OFMM) for the analysis of melanoma images. The moment invariants may vary with respect to geometric variations. For the analysis of orthogonal moments hundred random melanoma images and hundred non-melanoma images have been taken into consideration from the database of 570 melanoma images and 250 non-melanoma images respectively. Orthoganal moments have been computed by varying the phase angles from 10° to 40° with an equal interval of 10° degree for the orders 2, 4,8,16,32,64,128,256 respectively. For the optimal OMs Particle Swarm Optimization (PSO) technique have been used. These set of extracted optimal OMs have been further applied to classify melanoma images. Support Vector Machine (SVM) has been used for the classification of [1]sensitivity=88.78%.
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Engineering, Biomedical & Chemical Engineering; triaxial accelerometer; wearable devices; fall detection; mobile health-care; SisFall; Kalman filter
Online: 6 February 2018 (05:37:13 CET)
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The consequences of a fall on an elderly person can be reduced if the accident is attended by medical personnel within the first hour. Independent elderly people use to stay alone for long periods of time, being in more risk if they suffer a fall. The literature offers several approaches for detecting falls with embedded devices or smartphones using a triaxial accelerometer. Most of these approaches were not tested with the target population, or are not feasible to be implemented in real-life conditions. In this work, we propose a fall detection methodology based on a non-linear classification feature and a Kalman filter with a periodicity detector to reduce the false positive rate. This methodology requires a sampling rate of only 25 Hz; it does not require large computations or memory and it is robust among devices. We test our approach with the SisFall dataset achieving 99.4% of accuracy. Then, we validate it with a new round of simulated activities with young adults and an elderly person. Finally, we give the devices to three elderly persons for full-day validations. They continued with their normal life and the devices behaved as expected.
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Engineering, Biomedical & Chemical Engineering; bubble column; porous sparger; holdup; bubble size; transition point; CFD
Online: 5 February 2018 (03:45:04 CET)
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In our previous works we have proposed design equations that can predict with reasonable accuracy the transition point from homogeneous to heterogeneous regime as well as the gas holdup and the mean Sauter diameter at the homogeneous regime. The validity of the proposed correlations was checked with data obtained using different geometrical configurations and several Newtonian and non-Newtonian liquids as well as the addition of surfactants. However, in all the experiments the gas phase was atmospheric air. This work investigates the effect of gas phase properties by conducting experiments employing various gases (i.e., air, CO2, He) that cover a wide range of physical property values. Experiments revealed that only the use of low-density gas (He) has a measurable effect on bubble column performance. More precisely, when the low-density gas (He) is employed, the transition point shifts to higher gas flow rates and the gas holdup decreases, a fact attributed to the lower momentum force exerted by the gas. In view of the new data, the proposed correlations have been slightly modified to include the effect of gas phase properties and it is found that they can predict the aforementioned quantities with an accuracy of ±15%. It has been also proved that CFD simulations are an accurate means for assessing the flow characteristics inside a bubble column.
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Engineering, Biomedical & Chemical Engineering; structural optimization; system design; artificial intelligence; morphological operations; topology optimization; structural design
Online: 26 January 2018 (07:23:02 CET)
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Structural system design is the process of giving form to a set of interconnected components subjected to loads and design constraints while navigating a complex design space. While safe designs are relatively easy to develop, optimal designs are not. Modern computational optimization approaches employ population based metaheuristic algorithms to overcome challenges with the system design optimization landscape. However, the choice of the initial population, or ground structure, can have an outsized impact on the resulting optimization. This paper presents a new method of generating such ground structures, using a combination of topology optimization (TO) and a novel system extraction algorithm. Since TO generates monolithic structures, rather than systems, its use for structural system design and optimization has been limited. In this paper, truss systems are extracted from topologies through morphological analysis and artificial intelligence techniques. This algorithm, and its assessment, constitutes the key contributions of this paper. The structural systems obtained are compared with ground truth solutions to evaluate the performance of the algorithms. The generated structures are also compared against benchmark designs from the literature. The results indicate that the presented truss generation algorithm produces structures comparable to those generated through metaheuristic optimization, while mitigating the need for assumptions about initial ground structures.
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Engineering, Biomedical & Chemical Engineering; membrane transport; osmosis; interaction
Online: 23 January 2018 (06:43:31 CET)
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A membrane can be represented by an energy landscape that solutes or colloids must cross. A model accounting for the momentum and the mass balances on the membrane energy landscape establishes a new way of writing for the Darcy law. The counter pressure in the Darcy law is no longer written as the result of an osmotic pressure difference but rather as a function of colloid-membrane interactions. The ability of the model to describe the physics of the filtration is discussed in detail. This model is solved on a simplified energy landscape to derive analytical relationships that describe the selectivity and the counter pressure from ab-initio operating conditions. The model shows that the stiffness of the energy landscape has an impact on the process efficiency: a gradual increase in interactions (like with hourglass pore shape) can reduce the separation energetic cost. It allows the introduction of a new paradigm to increase membrane efficiency: the accumulation that is inherent to the separation must be distributed across the membrane. Asymmetric interactions thus lead to direction-dependent transfer properties and the membrane exhibits diode behavior. These new transfer opportunities are discussed.
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Engineering, Biomedical & Chemical Engineering; turbulent flow; stirred flows; membrane fouling; membrane bioreactor
Online: 10 January 2018 (11:05:04 CET)
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Numerical simulations of turbulent flows in a stirred dead-end membrane bioreactor are performed by the RNG k-ε model based on finite volume method using Fluent codes. Comparisons of numerical and experimental results confirm the reliability and feasibility of the constructed model. Flow structures such as wake flows and circulation loops in stirred flows were well simulated. An increase of stirring speed is proposed to use to minimize the low velocity region. The single vane stirrer is found to be beneficial for biological separations. Results reveal that the increase of vane number can enhance the mixing effect in flow domains. However, a circular disk stirrer goes against the formation of vertical circulations. The six-vane stirrer is found to be able to provide a uniform distribution of high shear stress.
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Engineering, Biomedical & Chemical Engineering; cognitive neural prosthetics; brain machine interfaces; porous silicon; microprobes
Online: 9 January 2018 (09:14:39 CET)
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Neural microprobes represent an important component of neural prosthetic systems where implanted microprobes record the electro-potentials generated by specific thoughts in the brain and convey the signals to algorithms trained to interpret these thoughts. Here, we present novel elongated multi-site neural probe that can reach depths greater than 10mm. We hypothesize that reaching such depth allows the recording of cognitive signals required to drive cognitive prosthetics. The impedance of the recording sites on the probes was on the order of 500 kΩ at 1 kHz, which is consistent with probes used for neurophysiological recordings. The probes were made porous using Xenon Difluoride (XeF2) dry etching to improve the biocompatibility and their adherence to the surrounding neural tissue. Numerical studies were performed to determine the reliability of the porous probes. We implanted the elongated probe in rats and show that the elongated probes are capable of simultaneously recording both spikes and local field potentials (LFPs) from various recording sites.
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Engineering, Biomedical & Chemical Engineering; mixing; CFD; microfluidics
Online: 18 December 2017 (06:54:15 CET)
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In this work the efficiency of a new μ-mixer design is investigated. As in this type of devices the Reynolds number is low, mixing is diffusion dominated and it can be enhanced by creating secondary flows. In this study we propose the introduction of helical inserts into a straight tube to create swirling flow. The influence of the insert’s geometrical parameters (pitch and length of the propeller blades) and of the Reynolds number on the mixing efficiency and on the pressure drop are numerically investigated. The mixing efficiency of the device is assessed by calculating a number, i.e. the Index of Mixing Efficiency that quantifies the uniformity of concentration at the outlet of the device. The influence of the design parameters on the mixing efficiency is assessed by performing a series of “computational” experiments, in which the values of the parameter are selected using DOE methodology. Finally using the numerical data, appropriate design equations are formulated, which, for given values of the design parameters, can estimate with reasonable accuracy both the mixing efficiency and the pressure drop of the proposed mixing device.
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Engineering, Biomedical & Chemical Engineering; Clark-type oxygen sensor; mitochondrial respiration; amperometry; cyclic voltammetry; oocyte; embryo
Online: 11 December 2017 (07:18:46 CET)
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Current commercially available instruments for monitoring mitochondrial respiration are incapable of single cell measurements. Therefore, we developed a three-electrode, Clark-type biosensor suitable for mitochondrial respirometry in single oocytes and embryos. The biosensor was embedded in a PMMA (polymethyl methacrylate) micro-chamber to allow investigation of single oocytes/embryos immersed in up to 100 µL of respiration buffer. The micro-chamber was completely sealed to avoid oxygen exchange between the inside of the chamber and the atmosphere, while being maintained at a temperature of 38.5 ˚C to preserve cell viability. Using amperometry, the oxygen consumption of cells inside the micro-chamber was measured as a change in output current and converted to femto-mol (fmol) oxygen consumed per second based on calibrations with known buffer oxygen concentrations. The sensor measured basal cell respiration supported by endogenous substrates, respiration associated with proton leak induced by inhibition of the adenosine triphosphate (ATP) synthase (complex V) with oligomycin, and the maximal non-coupled respiratory capacity revealed by Carbonyl cyanide-4-(trifluoromethoxy)phenylhydrazone (FCCP) titration. Some potential applications of this oxygen sensor system include evaluating effects of metabolic therapies on oocyte bioenergetics, and monitoring mitochondrial function throughout oocyte maturation and blastocyst development to predict embryo viability to compliment assisted reproductive technologies
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Engineering, Biomedical & Chemical Engineering; nonparametric change point detection; singular spectrum analysis; cumulative sums; ecg; ppg; arrhythmias; cardiac monitoring
Online: 11 December 2017 (06:54:53 CET)
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While the importance of continuous monitoring of electrocardiographic (ECG) or photoplethysmographic (PPG) signals to detect cardiac anomalies is generally accepted in preventative medicine, there remain major barriers to its actual widespread adoption. Most notably, current approaches tend to lack real-time capability, exhibit high computational cost, and be based on restrictive modeling assumptions or require large amounts of training data. We propose a lightweight and model-free approach for the online detection of cardiac anomalies such as ectopic beats in ECG or PPG signals based on the change detection capabilities of Singular Spectrum Analysis (SSA) and nonparametric rank-based cumulative sum (CUSUM) control charts. The procedure is able to quickly detect anomalies without requiring the identification of fiducial points such as R-peaks and is computationally significantly less demanding than previously proposed SSA-based approaches. Therefore, the proposed procedure is equally well suited for standalone use and as an add-on to complement existing (e.g. heart rate (HR) estimation) procedures.
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Engineering, Biomedical & Chemical Engineering; micro fluidic channel; micro particles; fluid flow rate; lab-on-a-chip; waveguide
Online: 23 November 2017 (11:13:24 CET)
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In this work modeling and analysis of an integrated opto-fluidic sensor, with a focus on achievement of single mode optical confinement and continuous flow of micro particles in the microfluidic channel for Lab-on-a Chip (LOC) sensing application is presented. This sensor consists of integrated optical waveguides, microfluidic channel among other integrated optical components. A continuous flow of micro particles in a narrow fluidic channel is achieved by maintaining the two sealed chambers at different temperatures and by maintaining a constant pressure of 1Pa at the centroid of narrow fluidic channel geometry. The analysis of silicon on insulator (SOI) integrated optical waveguide at an infrared wavelength of 1550nm for single mode sensing operation is presented. The optical loss is found to be 0.0005719dB/cm with an effective index of 2.2963. The model presented in this work can be effectively used to detect the nature of micro particles and continuous monitoring of pathological parameters for sensing applications.
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Engineering, Biomedical & Chemical Engineering; emulsion; dispersion; crystallization; melt emulsification; crystallization index; aggregation; nucleation
Online: 16 November 2017 (05:09:39 CET)
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Crystallization behavior of hexadecane (C16H34), octadecane (C18H38), eicosane (C20H42), and docosane (C22H46) dispersions of similar mean droplet diameter (x50.2 ≈ 15 µm) was investigated in quiescent systems and compared to crystallization under mechanical stress. In quiescent systems, the required supercooling decreased with increasing chain length of the alkanes to initiate crystallization. Crystallization of alkane dispersions under mechanical stress resulted in similar onset crystallization supercooling, as during quiescent crystallization. Increase of mechanical stress did not affect the onset crystallization supercooling within alkane dispersions.
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Engineering, Biomedical & Chemical Engineering; drug delivery; dentine; diffusion; bio-active molecules; CFD; μ-LIF; microfluidics
Online: 14 November 2017 (10:15:29 CET)
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This work deals with the numerical investigation of the delivery of potential therapeutic agents through dentinal discs (i.e. a cylindrical segment of the dentinal tissue) towards the dentin-pulp junction. The aim is to assess the main key features (i.e. molecular size, initial concentration, consumption rate, disc porosity and thickness) that affect the delivery of therapeutic substances to the dental pulp and consequently to define the necessary quantitative and qualitative issues related to a specific agent before its potential application in clinical practice. The CFD code used for the computational study is validated with relevant experimental data obtained using micro Laser Induced Fluorescence (μ-LIF) a non-intrusive optical measuring technique. As the phenomenon is diffusion dominated and strongly dependent on the molecular size, the time needed for the concentration of released molecules to attain a required value can be controlled by their initial concentration. Finally, a model is proposed which, given the maximum acceptable time for the drug concentration to attain a required value at the pulpal side of the tissue along with the aforementioned key design parameters, is able to estimate the initial concentration to be imposed and vice versa.
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Engineering, Biomedical & Chemical Engineering; cuprous oxide; non-enzymatic glucose sensor; alkaline solution; differential pulse voltammetry
Online: 13 November 2017 (03:15:30 CET)
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A cuprous oxide (Cu2O) thin layer served as the base for a non-enzymatic glucose sensor in an alkaline medium, 0.1 NaOH solution, with a linear range of 50-200 mg/dL using differential pulse voltammetry (DPV) measurement. An X-ray photoelectron spectroscopy (XPS) study confirmed the formation of the cuprous oxide layer on the thin gold film sensor prototype. Quantitative detection of glucose in both phosphate-buffered saline (PBS) and undiluted human serum were carried out. Neither ascorbic acid nor uric acid even at a relatively high concentration level of 100mg/dL in serum interfered with the glucose detection, demonstrating the excellent selectivity of this non-enzymatic cuprous oxide thin layer based glucose sensor. Chronoamperometry (CA) and single potential amperometric voltammetry were used to verify the measurements obtained by differential pulse voltammetry (DPV), and the positive results validated that the detection of glucose in a 0.1 M NaOH alkaline medium by DPV measurement was effective. Nickel, platinum and copper are commonly used metals for non-enzymatic glucose detection. The performance of these metal-based sensors for glucose detection using DPV were also evaluated. Cuprous oxide (Cu2O) thin layer based sensor showed the best sensitivity for glucose detection among the sensors evaluated.
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Engineering, Biomedical & Chemical Engineering; ECG quality assessment; complexity; entropy; ROC
Online: 9 November 2017 (05:47:22 CET)
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We compared performance of a novel encoding Lempel-Ziv complexity (ELZC) with approximate entropy (ApEn), sample entropy (SmpEn) and permutation entropy (PerEn) as nonlinear metric to assess ECG quality. Firstly to compare performance of discerning randomness and inherent nonlinear properties within time series, this study calculated the aforementioned four nonlinear complexity values on several typical artificial time series i.e., Gauss noise, two kinds of noisy time series, two kinds of Logistic series and periodic series, respectively. Then for analyzing sensitivity of the aforementioned four complexity methods to content level of different types noise within ECG recordings, we investigated variation trend of ELZC, ApEn, SmpEn and PerEn in several synthetic ECG recordings containing different types noise (i.e., baseline wander, muscle artefacts, electrode motion, power line and mixed noise) and different signal noise ratios (i.e., 15, 10, 5, 0, −5 and −10 dB). Finally, the four complexity methods were employed to classify the quality of real ECG recordings from the PhysioNet/Computing in Cardiology Challenge 2011 (CINC 2011) of the MIT databases, then receiver operating characteristic curves (ROC) and their corresponding area under curve (AUC) were yielded. The results showed ELZC could not only distinguish randomness and chaotic within time series but also reflect content level of noise within time series, and the highest AUC of PerEn, ELZC, SmpEn and ApEn were 0.850, 0.695, 0.474 and 0.461, respectively. The results demonstrated PerEn and ELZC were more effectively than ApEn and SmpEn for assessing ECG quality.
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Engineering, Biomedical & Chemical Engineering; di-silicate ceramics; fiber lasers; Fiber Bragg Grating; Energy Dispersive X-ray Spectroscopy
Online: 5 November 2017 (11:47:29 CET)
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Background: Lithium di-silicate dental ceramics bonding, realized by using different resins, is strictly dependent on micro-mechanical retention and chemical adhesion. The aim of this in vitro study was to investigate the capability of a 1070 nm fiber laser for their surface treatment. Methods: Samples were irradiated by a pulsed fiber laser at 1070 nm with different parameters (Peak Power from 5 kW to 5 kW, RR 20 kHz, speed from 10 to 50 mm/s, total Energy Density from 1.3 to 27 kW/cm2) and the thermal elevation during the experiment was recorded by a Fiber Bragg Grating (FBG) temperature sensor. Subsequently, the surface modifications were analysed by optical microscope, Scanning Electron Microscope (SEM) and Energy Dispersive X-ray Spectroscopy (EDS). Results: With a Peak Power of 5 kW, RR of 20 kHz and speed of 50 mm/s, the microscopic observation of the irradiated surface showed increased roughness with small areas of melting and carbonization. EDS analysis revealed that, with these parameters, there are no evident differences between laser-processed samples and controls. Thermal elevation during laser irradiation ranged between 5 °C and 9 °C. Conclusions: 1070 nm fiber laser can be considered as a good device to increase the adhesion of Lithium di-silicate ceramics.
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Engineering, Biomedical & Chemical Engineering; cardamom; supercritical CO2 extraction; β-sitosterol
Online: 1 November 2017 (04:54:35 CET)
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Cardamom is plant of the Zingiberaceae family. It has been used for the treatment of many diseases such as migraine, bronchitis, stomach and intestinal disorders. Cardamom contains triterpenes, resins, starch and fatty compounds. Phytosterols (stigmasterol, campesterol and β-sitosterol) are a group steroid alcohol in plants. They are used food, medicine and cosmetic industry. They are protective effects against some types of cancer too. Phytosterols are found in the vegetable oil such as the spindle, corn and soybean oil. This paper deals with the maximum oil and β-sitosterol yield were investigated by means of the supercritical CO2 extraction of cardamom. The effect of operating parameters as temperature, pressure and CO2 flow rate were investigated on oil yield. The amount of β-sitosterol was analyzed by Gas Chromatography-Mass Spectrometry (GC-MS) at optimized conditions. The optimized conditions were recorded as temperature of 40oC, pressure of 200 bar and CO2 flow rate of 4 L/min. The maximum oil yield and amount of β-sitosterol were found as 74.83 mg oil/g seed and 4.73 mg β-sitosterol/g seed cardamom under these conditions.
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Engineering, Biomedical & Chemical Engineering; photodegradation; TiO2; ionic liquids; activated carbon; synergistic effect
Online: 24 October 2017 (11:32:13 CEST)
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Ionic liquids (ILs) have gained interest among researchers due to its tunable properties that can be used in wide applications. However, toxicity and bio-degradation studies of ILs proved that most of the aromatic ILs, such as imidazolium is highly toxic and non-biodegradable. Several advance oxidation processes (AOPs) have been investigated by researchers to evaluate the efficiency of the systems for the removal of ILs from wastewater. However, the issue on relative high cost and environmental concern has limited the application of these AOPs in industry. In this research, photocatalytic study using hybrid nano-materials was conducted to evaluate the efficiency of this system as an alternative AOP system for removal of ILs from wastewater. The synergistic effect of adsorption-photodegradation was introduced by depositing Fe-TiO2 onto the functionalized activated carbon (AC). Nano-TiO2 was synthesized using micromulsion method before modification with transition metal and deposited onto the oxidized AC. Photodegradation reaction of 1-butyl-3-methylimidazolium chloride [bmim]Cl was investigated under simulated visible light irradiation. It was observed that the overall efficiency of the system was increased with the increasing amount of Fe dopant. Investigation on the extrinsic factors such as solution pH, initial concentration of ILs and photocatalyst dosage showed to significantly affect the overall efficiency of the systems where the optimum condition for the system was observed at pH 10, with initial ILs at 1mM at 1 g/L of photocatalyst. The best performance photocatalyst was 0.2Fe-TiO2/AC.
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Engineering, Biomedical & Chemical Engineering; free software; human motion; Kinovea; low cost; reliability; validity; video analysis
Online: 9 October 2017 (05:07:57 CEST)
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Clinical rehabilitation and sports performance analysis both require the objectification of movement. Kinovea© is a free 2D motion analysis software that enables the establishment of kinematics parameters. This low-cost technology has been used in sports sciences, as well as clinical field and research work. Although it has been validated as a tool with which to assess time-related variables, this is not yet the case regarding angular and distance variables. The main objective of this study was to determine the validity and reliability of the Kinovea software in obtaining angular and distance data at different perspectives of 90°, 75°, 60° and 45°. For this purpose, a figure with 29 points was designed (in AutoCAD) and 24 frames analysed. Each frame was examined by three observers who each made two attempts. For each export data item, 20 angles and 20 distance variables were calculated, with intra- and inter-observer reliability also analysed. To evaluate Kinovea reliability and validity a multiple approach was applied involving the following analysis: -systematic error with a two-way ANOVA 2x4; -relative reliability with ICC and CV (95% confidence interval); -absolute reliability with Standard Error. The results thus obtained indicate that the Kinovea software is a valid and reliable tool that is able to measure accurately at distances up to 5 m from the object and at an angle range of 90°–45°. Nevertheless, for optimum results an angle of 90° is suggested.
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Engineering, Biomedical & Chemical Engineering; Biodegradation; fats and oils; activated sludge
Online: 2 October 2017 (08:51:14 CEST)
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Fats and oils are the most common contaminants in wastewater and are usually discarded through physical processes. This paper studies its elimination through an environmentally friendly biological treatment, yielding good results on both laboratory scale and in the field. In this study a comparative evaluation of the biodegradation of fats and oils in two scenarios were developed in an activated sludge plant at laboratory scale, and a wastewater treatment plant. The full-scale values for some key parameters are compared, such as the oil concentration in the influent and effluent, mass loading and removal efficiency and biodegradation systems. Activated sludge plant at laboratory scale working on a mass load range from 0.2 to 0.8 (kg COD / day / kg MLSS) initially reaches levels of 75% biodegradation thereafter influent concentration is increased and thereby the mass load is increased in a range of working system under high load and biodegradation rates ranging from 71 to 64% are achieved. The actual system consists of a treatment plant wastewater with an aerobic digester for sludge treatment. Fats and oils are retained in a previous degreaser to biological treatment and subsequently sent to the aerobic sludge digester, constituting of thus on a single substrate, resembling an activated sludge plant with extended aeration mode, and levels of biodegradation in the range of 69 to 92%. From this work, we can say that the choice of biological treatment for fats and oils is feasible and adequate. Furthermore, the biomass presents great adaptability to the oil substrate, favored in this case for being the only source of carbon, therefore fats and oils should be removed using biological treatment, instead of the flotation procedure or at most using it as an intermediate process
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Engineering, Biomedical & Chemical Engineering; design of experiments; multi-objective optimization; Fisher information matrix; curvature; biological processes; mathematical modeling
Online: 15 September 2017 (11:07:52 CEST)
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The bottleneck in creating dynamic models of biological networks and processes often lies in estimating unknown kinetic model parameters from experimental data. In this regard, experimental conditions have a strong influence on parameter identifiability and should therefore be optimized to give the maximum information for parameter estimation. Existing model-based design of experiment (MBDOE) methods commonly rely on the Fisher Information Matrix (FIM) for defining a metric of data informativeness. When the model behavior is highly nonlinear, FIM-based criteria may lead to suboptimal designs since the FIM only accounts for the linear variation of the model outputs with respect to the parameters. In this work, we developed a multi-objective optimization (MOO) MBDOE, where model nonlinearity was taken into consideration through the use of curvature. The proposed MOO MBDOE involved maximizing data informativeness using a FIM-based metric and at the same time minimizing the model curvature. We demonstrated the advantages of the MOO MBDOE over existing FIM-based and other curvature-based MBDOEs in an application to the kinetic modeling of fed-batch fermentation of Baker's yeast.
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Engineering, Biomedical & Chemical Engineering; petroleum sludge; characterization; total organic carbon; metal concentration
Online: 8 August 2017 (13:24:39 CEST)
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Thermal plasma technique is becoming prominent in the treatment of variety of waste ranging from municipal solid waste, incinerator residue, hospital waste, electronics waste and industrial sludge. Application of the new treatment technology to petroleum sludge requires information on the nature and characteristics of the sludge that will be use to optimize the treatment system. In this investigation, petroleum sludge obtained from Petronas Melaka was characterized for its physical and chemical features. Proximate and ultimate analysis as well as determination of elemental composition were carried out. The sludge was found to contain high moisture (78.91%), low ash (5.06%), low volatiles (5.52%) and high fixed carbon (10.51%). The sludge has a TOC of 54.48% and HHV of 23.599MJ/kg. Despite the high moisture content, the higher heating value (HHV) is high when compared to literature values. The high value of HHV may be associated with the high fixed carbon, low ash content and high value of TOC. The apparent density of the sludge is slightly lower. Fourteen heavy metals are detected in significant quantities. Proper waste management that will safely dispose the sludge is required. The waste disposal technique should take into cognizant the possibility of leaching of heavy metals into ground water on one hand and the gasification of lighter ones on the other.
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Engineering, Biomedical & Chemical Engineering; computational methods; optimisation; plant optimisation; chemical processes; physical processes; computational intelligence; maximum value; minimum value; functions
Online: 28 July 2017 (17:22:37 CEST)
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Many of engineering’s problems are about to optimise equations, functions and process models equations which appear on common or even complex science’s cases. Most applied optimisation methods nowadays can only be used on particular cases, so the main objective of this article is to define a computational method that can optimise or even find target values for specified objective functions and variables, by just using computer effort. Chemical plants involve many differential equations and they can be optimised with more facility now. On this paper, there are shown as example, an optimisation for a chemical reactor, which is found the optimal temperature and volumetric flow rate of feed, for the given objective function being the composition of the desired product. Named Domain’s Sweep, it is an algorithm that evaluate given(s) mathematical function(s) and/or equation(s) by varying your(s) independent variable(s) through loops with a given step size and solving it after closing the degrees of freedom, and finally, with some condition statements, store all the optimum values of given or created objective functions with its respective independent variables. In another words, the user create an objective function and this method find the function’s maximum, minimum or a certain chosen target value, even if it does not have an inflection point in the given search interval of the independent variables.
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Engineering, Biomedical & Chemical Engineering; Biomedical Engineering, Cell Stretching, Mechanobiology.
Online: 24 July 2017 (10:04:57 CEST)
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Cellular response to mechanical stimuli is an integral part of cell homeostasis. The interaction of the extracellular matrix with the mechanical stress plays an important role in cytoskeleton organisation and cell alignment. Insights from the response can be utilised to develop cell culture methods that achieve predefined cell patterns, which are critical for tissue remodelling and cell therapy. We report the working principle, design, simulation and characterisation of a novel electromagnetic cell stretching platform based on the double-sided axial stretching approach. The device is capable of introducing a cyclic and static strain pattern on a cell culture. The platform was tested with fibroblasts. The experimental results are consistent with the previously reported cytoskeleton reorganisation and cell reorientation induced by strain. The orientation of the cells is highly influenced by external mechanical cues. Cells reorganise their cytoskeleton to avoid external strain and to maintain intact extracellular matrix arrangements.
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Engineering, Biomedical & Chemical Engineering; Bioreactor, Taguchi, Prodigiosin, Serratia, Process Development
Online: 3 July 2017 (17:13:27 CEST)
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One of the major steps toward the industrialization of microbial product(s) is to optimize the cultivation conditions at the large scale bioreactor and successfully control the microbial behavior within large scale production environment. Statistical Design of Experiment was proven to optimize a vast number of microbial processes to achieve robustness and explore possible interactions among the variables. In this research, Taguchi Orthogonal Array was applied to optimize the cultivation condition of a newly isolated Prodigiosin-producing marine bacterial strain, Serratia AM8887, at bioreactor level. Two steps fermentation process was applied; as the productivity was scaled up from shake flask level to a bench top bioreactor (5L) and subsequently to an in-situ sterilization bioreactor system (20L) leading to a yield of 7g/L compared to 100mg/L prior to optimization confirming that; applying Taguchi experimental design is a reliable and good positive option for the optimization of biotechnological processes.. The produced pigment was purified and the chemical structure was revealed by means of Spectrophotometric, Maas Spectrum (MS), Fourier transform infrared (FT-IR), and proton nuclear magnetic resonance (1H-NMR) spectroscopy analysis. The biological activity including antibacterial, antioxidants and cytotoxicity to cancer cells line of the pigment were explored. The pigment showed very characteristic features that could helpful in food, pharmaceuticals and/or textile industries.
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Engineering, Biomedical & Chemical Engineering; thermal-expandable；microcapsules；intumescent； waterborne polyurethane； flame-retardant coatings
Online: 20 June 2017 (11:23:07 CEST)
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Thermal-expandable microcapsules (TEMs) for water-based coatings were synthesized with co-polymer of Acrylonitrile (AN) - Methyl methacrylate (MMA) - Ethylhexyl acrylate (EHA) - Divinylbenzene (DVB) as shell and toluene-p-sulfonyl hydrazide as core by suspension polymerization method. It was found that the microcapsules with desirable thermal expansion property and good heat stability could be obtained with a shell monomers composition of 70% AN /20% MMA /9% EHA /1% DVB. When 2% styrene-maleic acid copolymer (SMC) as emulsifier and 3% poly (vinyl pyrrolidone) (PVP) as dispersing agent were used, well defined spherical and more uniform microcapsules could be prepared. It was also found that when the shell/core mass ratio was 3:1, an encapsulation efficiency of ca. 94.5% could be achieved. Beyond this ratio, the increase of encapsulation efficiency reached a plateau. The 100 μm thickness film of water-based coating containing 5% microcapsules could be expanded to the thickness of 450 μm after exposed at 150 °C for 2 minutes. TG analysis revealed the mass loss start temperature of coating increased by more than 30 °C when 5% microcapsules were added to water-based coatings, which demonstrated the flame-retardant function of the coatings.
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Engineering, Biomedical & Chemical Engineering; wearable; photoplethysmography; spectral kurtosis; extreme learning machine (ELM) regression; respiration rate; cardiovascular diseases (CVD)
Online: 16 June 2017 (10:45:32 CEST)
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In this paper, we present the design of a wearable photoplethysmography (PPG) system, R-band for acquiring the PPG signals. PPG signals are influenced by the respiration or breathing process and hence can be used for estimation of respiration rate. R-Band detects the PPG signal that is routed to a Bluetooth low energy device such as a nearbyplaced smartphone via microprocessor. Further, we developed an algorithm based on Extreme Learning Machine (ELM) regression for the estimation of respiration rate. We proposed spectral kurtosis features that are fused with the state-ofthe-art respiratory-induced amplitude, intensity and frequency variations-based features for the estimation of respiration rate (in units of breaths per minute). In contrast to the neural network (NN), ELM does not require tuning of hidden layer parameter and thus drastically reduces the computational cost as compared to NN trained by the standard backpropagation algorithm. We evaluated the proposed algorithm on Capnobase data available in the public domain.
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Engineering, Biomedical & Chemical Engineering; thermopile sensor; actimetry; thermal camera, data classification; tele-medicine; polysomnography;
Online: 26 April 2017 (12:27:38 CEST)
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This paper address the development of a new technic in the sleep analysis domain. Sleep is defined as a periodic physiological state during which vigilance is suspended and reactivity to external stimulations diminished. We sleep on average between six and nine hours per night and our sleep is composed of four to six cycles of about 90-minutes each. Each of these cycles is composed of a succession of several stages of sleep, more or less deep. The analysis of sleep is usually done using a polysomnography. This examination consists of recording, among other things, electrical cerebral activity by electroencephalography (EEG), ocular movements by electrooculography (EOG) and chin muscle tone by electromyography (EMG). The recording is done mostly in a hospital, more specifically in a service for monitoring the pathologies related to sleep. The readings are then interpreted manually by an expert to generate a hypnogram, a curve showing the succession of sleep stages during the night in 30-second epochs. The proposed method is based on the follow-up of the thermal signature that makes it possible to classify the activity into three classes: "awakening", "calm sleep" and "agitated sleep". The contribution of this non-invasive method is part of the screening of sleep disorders, to be validated by a more complete analysis of the sleep. The measure provided by this new system, based on temperature monitoring (patient and ambient), aims to be integrated into the tele-medicine platform developed within the framework of the Smart-EEG project by the SYEL - SYstèmes ELectroniques team. Analysis of the data collected during the first surveys carried out with this method showed a correlation between thermal signature and activity during sleep. The advantage of this method lies in its simplicity and the possibility of carrying out measurements of activity during sleep and without direct contact with the patient at home or hospitals.
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Engineering, Biomedical & Chemical Engineering; optoelectronic sensor; near-infrared spectroscopy; thrombus diagnosis; shock monitoring; fatigue evaluation
Online: 26 April 2017 (06:05:07 CEST)
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We attempted to apply the optoelectronic sensor entitled 'OPT101' in intensive care unit clinics, based on its optoelectronic response characteristics in near-infrared wavelength range and near-infrared spectroscopy principle. The successful novel applications in our lab include early-diagnosis and therapeutic effect tracking of thrombus, noninvasive monitoring of patients' shock severity, and fatigue evaluation. This study also expects further improvements of the detector in noninvasive clinical applications.
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Engineering, Biomedical & Chemical Engineering; Irregular nanopore; Poisson-Nernst-Planck; Navier-Stokes; Maxwell stress tensor;
Online: 18 April 2017 (17:50:55 CEST)
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Nanopores with irregularities are promising tools for distinguishing nano-size objects by their shape, but the forces on the object that critically influence its axial and rotational movement are unclear. The physics of the situation was described using the Poisson-Nernst-Planck and Navier-Stokes equations. With uniformly charged object the axial Coulomb and dielectric pressure (which opposes it and is surprisingly important), control the object's axial movement and rotation. Even without external pressure the hydrodynamic pressure is significant (negative at its upper and positive at its lower surface), but its total value is almost zero. If the object is charged only on the upper surface the axial upper Coulomb pressure is near zero close to the center, but negative near its end (the pressure is zero at the lower surface). The total axial dielectric pressure, which is largely dominated by the pressure at the upper surface, is positive along the length of the object becoming pronounced near its end. The axial hydrodynamic pressure is negative and significant at the upper surface (zero at the lower surface), diminishes in value near the object's end, critically influencing its axial movement, which becomes much faster. At its end the axial dielectric pressure prevails, and controls its rotation.
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Engineering, Biomedical & Chemical Engineering; 3D Printing; Microfluidics; Micromixing
Online: 14 April 2017 (06:03:24 CEST)
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3D printing facilitates the straightforward construction of microchannels with complex three-dimensional architectures. Here, we demonstrate 3D-printed modular mixing components that operate on the basis of splitting and recombining fluid streams to decrease interstream diffusion length. These are compared to helical mixers that operate on the principle of chaotic advection.
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Engineering, Biomedical & Chemical Engineering; graphene oxide; porous structure; gold nanoparticles; indium tin oxide, neurotransmitters, dopamine, composites, electrochemical detection
Online: 6 April 2017 (16:49:26 CEST)
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The detection of dopamine in a highly sensitive and selective manner is crucial for the early diagnosis of a number of neurological diseases/disorders. Here, a report on a new platform for the electrochemical detection of dopamine with a considerable accuracy that comprises a 3D porous graphene oxide (pGO)/gold nanoparticle (GNP)/pGO composite-modified indium tin oxide (ITO) is presented. The pGO was first synthesized and purified by ultrasonication and centrifugation, and it was then further functionalized on the surface of a GNP-immobilized ITO electrode. Remarkably, owing to the synergistic effects of the pGO and GNPs, the 3D pGO-GNP-pGO-modified ITO electrode showed a superior dopamine-detection performance compared with the other pGO- or GNP-modified ITO electrodes. The linear range of the newly developed sensing platform is from 0.1 μM to 30 μM with a limit of detection (LOD) of 1.28 μM, which is more precise than the other previously reported GO-functionalized electrodes. Moreover, the 3D pGO-GNP-pGO-modified ITO electrodes maintained their detection capability even in the presence of several interfering molecules (e.g., ascorbic acid, glucose). The proposed platform of the 3D pGO-GNP-pGO-modified ITO electrode could therefore serve as a competent candidate for the development of a dopamine-sensing platform that is potentially applicable for the early diagnosis of various neurological diseases/disorders.
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Engineering, Biomedical & Chemical Engineering; under-potential deposition; bismuth sub-layer; lead ions; DPV
Online: 4 April 2017 (10:43:35 CEST)
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The accumulation of high levels of lead or lead ions in a human body is harmful, particularly to children. Its neurotoxic effect is profound, damaging the central and peripheral nervous systems, resulting in stunted growth, behavioral problems and learning disabilities. The major source of lead or lead ions comes from the drinking water and tap water. The assessment of the water quality, including lead or lead ion content, is usually completed by a regional water department professional. This assessment is time-consuming and requires expensive instruments and skilled operators. Therefore, there is a need to produce a simple-use and relatively inexpensive method to detect lead or lead ions in water samples. This research has developed a simple-use, cost effective sensor system for the detection of lead ions in tap water. An under-potential deposited bismuth sub-layer on a thin gold film based electrochemical sensor was designed, manufactured and evaluated. Differential pulse voltammetry (DPV) measurement technique was employed in this detection. Tap water from the Cleveland, Ohio, USA regional water district was the test medium. Concentrations of lead ion in the range of 8 X 10-8 M to 8 x 10-4 M were evaluated. This DPV detection system required 3 -6 minutes to complete the detection measurement. A longer measurement time of 6 minutes was used for the lower lead ion concentration. The selectivity of this lead ion sensor was very good, and Fe III, Cu II, Ni II and Mg II at a concentration level of 5×10-4 M did not interfere with the lead ion measurement.
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Engineering, Biomedical & Chemical Engineering; metabolic flux analysis, model misspecification, constraint-based model, stoichiometric model, Chinese hamster ovary cell culture
Online: 16 March 2017 (17:38:36 CET)
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Background: Metabolic flux analysis (MFA) is an indispensable tool in metabolic engineering. The simplest variant of MFA relies on an overdetermined stoichiometric model of the cell’s metabolism under the pseudo-steady state assumption, to evaluate the intracellular flux distribution. Despite its long history, the issue of model error in the overdetermined MFA, particularly misspecifications of the stoichiometric matrix, has not received much attention. Method: We evaluated the performance of statistical tests from linear least square regressions, namely Ramsey RESET test, F-test and Lagrange multiplier test, in detecting model misspecifications in the overdetermined MFA, particularly missing reactions. We further proposed an iterative procedure using the F-test to correct such an issue. Result: Using Chinese hamster ovary and random metabolic networks, we demonstrated that: (1) a statistically significant regression does not guarantee high accuracy of the flux estimates, (2) the removal of a reaction with a low flux magnitude can cause disproportionately large biases in the flux estimates, (3) the F-test could efficiently detect missing reactions, and (4) the proposed iterative procedure could robustly resolve the omission of reactions. Conclusion: Our work demonstrated that statistical analysis and tests could be used to systematically assess, detect and resolve model misspecifications in the overdetermined MFA.
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Engineering, Biomedical & Chemical Engineering; activity classification; activity monitoring; wearable sensors; sensor positions
Online: 16 March 2017 (17:19:01 CET)
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This paper focuses on optimal sensor positioning for monitoring activities of daily living and investigates different combinations of features and models on different sensor positions, i.e., the side of the waist, front of the waist, chest, thigh, head, upper arm, wrist, and ankle. Sixteen features are extracted and the feature importance is measured by using the Relief-F feature selection algorithm. Eight classification algorithms are evaluated on a dataset collected from young subjects and that collected from elderly subjects, with two different experimental settings. To deal with different sampling rates, signals with a high data rate are down-sampled and a transformation matrix is used for aligning signals to the same coordinate system. The thigh, chest, side of the waist, and front of the waist are the best four sensor positions for the first dataset (young subjects), with average accuracy values being greater than 95%. The best model obtained from the first dataset for the side of the waist is validated on the second dataset (elderly subjects). The most appropriate number of features for each sensor position is reported. The results provide a reference for building activity recognition models for different sensor positions, as well as for data acquired from different hardware platforms and subject groups.
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Engineering, Biomedical & Chemical Engineering; 17 β-estradiol; estrogen pollution; female reproduction; DPV
Online: 8 March 2017 (05:39:59 CET)
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Environmental estrogen pollution and estrogen effects on the female reproduction system are well-recognized scientifically. Among the estrogens, 17 β-estradiol is a priority in environmental estrogen pollution, and it is also a major contributor to estrogen which regulates the female reproduction system. 17 β-estradiol is carcinogen and has a tumor promotion effect relating to breast cancer, lung cancer and others. It also affects the psychological well-being such as depression, fatigue and others. Thus, a simple method of detection of 17 β-estradiol will be important for both environmental estrogen pollution and women’s health care. This study demonstrates a simple-use, cost effective 17 β-estradiol biosensor system which can be used for both environment and women’s health care applications. The bio-recognition mechanism is based on the influence of the redox couple, K3Fe (CN) 6/K4Fe (CN) 6 by the interaction between 17 β-estradiol antigen and its α-receptor (ER- α; α-estrogen antibody). The transduction mechanism is an electrochemical analytical technique, differential pulse voltammetry (DPV). The levels of 17 β-estradiol antigen studied was between 2.25 pg/mL to 2,250 pg/mL, Phosphate buffered saline (PBS), tap water from the Cleveland regional water district, and simulate urine were used as the test media covering the potential application areas for 17 β-estradiol detection. An interference study by testosterone which has a similar chemical structure and molecular weight as those of 17 β-estradiol was carried out, and this 17 β-estradiol biosensor showed excellent specificity without any interference by similar chemicals.
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Engineering, Biomedical & Chemical Engineering; sustainability; society; environment; technology
Online: 13 February 2017 (09:49:55 CET)
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It is postulated in this research that the paradox of “advances in technology and management not keeping pace with the ever-increasing urban problems” is due to the poor understanding of person-focused governance of societal, environmental and economic entities. Therefore, the objective of this paper is to present an adaptive institutional model of person-driven effectiveness and ineffectiveness. The model proposes that human, ecologic and economic outcomes are heavily influenced by a complex system of systems, spanning from individually unique “non-physical influencers” to a broader set of social and environmental influencers that have a common impact on the larger society-environment-economy (SEE) system. At the heart of the model is an analytic formulation that explains the phenomena of non-physical blocker, enhancer and indifferent that are responsible for the adaptation and maladaptation of social agents, and accordingly for the sustainability and unsustainability of SEE systems. Examples are provided to illustrate the model applications: (a) the non-physical and maladaptive syndromes as antecedents of multi-morbidity and (b) the broadened and narrowed minds as sources of sustainability and unsustainability at the SEE system level within the context of emerging technologies such as engineered nanomaterials.
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Engineering, Biomedical & Chemical Engineering; cell culture; bioreactor; live cell imaging; tissue engineering
Online: 31 January 2017 (12:39:46 CET)
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Here, we present a staged approach for an innovative repurposing of a portable infant humidicrib into a live cell growth, observation, and imaging system. Furthmore, humidicrib can support different variations of “umbilical” bioreactors, and can be used to conduct electrophysiology experiments and in situ immunohistochemistry. Modifications incorporate a closed loop carbon dioxide (CO2) concentration control system with umbilical CO2 and heating support for tailored bioreactors. The repurposing cost is inexpensive and allows for the continued observation and imaging of cells. This prototype unit has been used to continuously observe and image live primary neurons for up to 21 days. This demonstrates the repurposed units’ suitability for use in tissue culture based research, particularly where modifications to microscopes are required or where sensitive manipulation outside of a standard incubator is needed.
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Engineering, Biomedical & Chemical Engineering; cation exchange chromatography; minor milk protein; response surface modeling; simulation; steric mass action (SMA); optimization
Online: 12 January 2017 (09:59:40 CET)
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Lactoperoxidase (LP), which is a high-value minor whey protein, has recently drawn extensive attention from research scientists and industry due to its multi-function and potential therapeutic applications. In this study, the separation and optimization of two similar-sized proteins, LP and lactoferrin (LF) were investigated using strong cation exchange column chromatography. Optimization was started with central composite design based experiments to characterize the importance of different decision variables. The three variables used in the optimization were flow rate, length of gradient and final salt concentration in the linear elution gradient step. The obtained empiric functional model represented the effect of the significant factors on the yield as the objective function. Afterwards, the calibrated mechanistic model was employed to predict accurate optimal set of variables. The optimal operating points were found and the results were compared with validation experiments. Predictions respecting yield confirmed a very good agreement with experimental results while keeping purity, a product quality characteristic, equal or above to a predefined value.
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Engineering, Biomedical & Chemical Engineering; EMG; EEG; ECG; EOG; polysomnography
Online: 25 December 2016 (08:34:20 CET)
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The supply chain has incorporated products by putting them into hair scarfs. This study introduces the use of mini chips in health and beauty products and can reduce fatigue through enhanced sleep patterns. The mini chip could be placed in the scarf and used as a prototype. RFID technology provides the supply chain with specific information that is used to identify products and make communication easier. (Muhammad, et. al. 2013) This paper presents a new tool herein referred to as a scarf prototype which is developed to analyse EMG (electromyogram), ECG (electrocardiography), EEG (electroencephalogram), and EOG (electro-oculogram) signals that focuses in the area of sleep disorders. The mini chips used can be used to determine a solution for sleep disruption by using automated analytics. This could lead to improvement in our understanding of sleep disruption and overall sleep physiology. Automated technology allows repeated measurements, evaluation of sleep patterns, and provide suggestions to improve a person’s quality of sleep. This analysis compares the use of polysomnography and the scarf prototype. The analytics provide models and shows correlation between variables, such as EMG, ECG, EEG, and EOG. This study shows that the results from the scarf prototype is just as reliable as the original method, polysomnography.
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Engineering, Biomedical & Chemical Engineering; membrane bioreactor (MBR); membrane fouling; hollow fiber membrane; hydrophilicity; hydrophobicity; wastewater treatment
Online: 18 December 2016 (10:04:27 CET)
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We aimed to investigate the relationship between membrane material and development of membrane fouling in a membrane bioreactor (MBR) using membranes with different pore sizes and hydrophilicities. Batch filtration tests were performed using submerged single hollow fiber membrane ultrafiltration (UF) modules with different polymeric membrane materials including cellulose acetate (CA), polyethersulfone (PES), and polyvinylidene fluoride (PVDF) with activated sludge taken from a municipal wastewater treatment plant. The three UF hollow fiber membranes were prepared by a non-solvent-induced phase separation method and had similar water permeabilities and pore sizes. The results revealed that transmembrane pressure (TMP) increased more sharply for the hydrophobic PVDF membrane than for the hydrophilic CA membrane in batch filtration tests, even when membranes with similar permeabilities and pore sizes were used. PVDF hollow fiber membranes with smaller pores had greater fouling propensity than those with larger pores. In contrast, CA hollow fiber membranes showed good mitigation of membrane fouling regardless of pore size. The results obtained in this study suggest that the surface hydrophilicity and pore size of UF membranes clearly affect the fouling properties in MBR operation when using activated sludge.
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Engineering, Biomedical & Chemical Engineering; Y-shaped microfluidic device; wall shear stress; adenosine triphosphate (ATP) signal; combined effect; vascular endothelial cells; calcium dynamics
Online: 22 November 2016 (09:51:31 CET)
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The intracellular calcium dynamics in vascular endothelial cells (VECs) in response to wall shear stress (WSS) and/or adenosine triphosphate (ATP) have been commonly regarded as an important factor in regulating VEC function and behavior including proliferation, migration and apoptosis. However, the effects of time-varying ATP signals have been usually neglected in the past investigations in the field of VEC mechanobiology. In order to investigate the combined effects of WSS and dynamic ATP signals on the intracellular calcium dynamic in VECs, a Y-shaped microfluidic device, which can provide the cultured cells on the bottom of its mixing micro-channel with stimuli of WSS signal alone and different combinations of WSS and ATP signals in one single micro-channel, is proposed. Both numerical simulation and experimental studies verify the feasibility of its application. Cellular experimental results also suggest that a combination of WSS and ATP signals rather than a WSS signal alone might play a more significant role in VEC Ca2+ signal transduction induced by blood flow.
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Engineering, Biomedical & Chemical Engineering; mixing time; LIF; CFD; SPH; stirred tank
Online: 3 November 2016 (09:22:18 CET)
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Performing optimisation and scale-up studies of crystallisation systems requires accurate and computationally efficient mathematical models. The assumption of the ideal mixing conditions in batch reactors typically produce inaccurate results while the computational expense of CFD models is still prohibitively high. Therefore, in this work, a new intermediary approach is proposed that takes into account the non-ideal mixing conditions in the reactor and requires less computational resources than full CFD simulations. Starting with the Danckwerts concept of the intensity of segregation, an analogy between its application to chemical reactions and the kinetics of the crystallisation phenomena (such as nucleation and growth) has been made. As a result, the modified kinetics expressions have been derived which incorporate the effect of non-idealities present in stirred reactors. This way, based on the experimental measurements of the mixing time using the Laser Induced Fluorescence (LIF) technique, computationally more efficient mathematical models can be developed in two ways: (1) the accurate semi-empirical correlations are available for standard mixing configurations with the most often used types of impellers, (2) CFD simulations can be utilised for estimation of the mixing time; in this case it is necessary to simulate only the mixing process. The benefits offered by the LIF experimental technique have been demonstrated and some frequent problems in its application analysed. The mixing time results for configurations with and without baffles for three types of impellers and four different rotational speeds have been presented. The false shorter mixing times in the non-baffled configurations have been observed and this phenomena explained by the existence of two segregated zones in the reactor and confirmed by additional experiments. The precise measurements in these cases have been shown as difficult using the LIF technique, particularly for higher rpms. The experimental data has been compared to the preliminary simulation results obtained from the Smoothed Particle Hydrodynamics method and the standard k-ε turbulence model with the modest success. The shortcomings of the SPH model have been recognized and the directions for the future work discussed.
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Engineering, Biomedical & Chemical Engineering; CFD; SPH; population balance; NVidia CUDA; OpenMP
Online: 2 November 2016 (05:31:48 CET)
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The second article in the series presents the application of the Smoothed Particle Hydrodynamics (SPH) method to modelling of batch crystallisation in stirred tanks. A methodology to integrate the population balance equations (PBE) in parallel and independently from the Navier-Stokes equations is demonstrated. The benefits of the proposed methodology in terms of computational requirements, accuracy and availability of the crystal size distribution are discussed. The specific formulation of the SPH equations where the resulting system of ordinary differential equations is solved using the weighted contributions rather than numerically by solving a linear system of equations allows for massive parallelisation and a very loose coupling of the population balance and the fluid dynamics. It has been demonstrated, that the population balance equations can be solved on a Shared Memory Architecture (SMA) system using the OpenMP interface while the fluid dynamics equations being computed independently on a General Purpose Graphics Processing Unit (GPGPU) using the NVidia CUDA technology. This way, a significant portion of the computational overhead due to the large number of additional transport equations resulting from the discretisation of the population balance was removed: the SPH simulation coupled with 200 population balance equations was only 40% slower compared to SPH-only simulation. Two methods for the solution of population balance equations that preserve full crystal size distribution were implemented: discretised population balance (DPB) and method of characteristics (MOCH). The DPB equations are solved using the high-resolution finite-volume method with flux limiter and the effect of a large number of different flux limiters have been investigated. Both methods were validated using the case studies from the literature where an analytical solution can be derived. The developed models were applied to a numerical solution of coupled computational fluid dynamics and population balance equations to model a batch crystallization process. The effect of the hydrodynamics on the local temperature/supersaturation and the resulting crystal size distribution was captured and compared to the ideal mixing case. The simulation results from the DPB and MOCH methods were compared in terms of computational requirements and accuracy and MOCH selected as computationally more efficient and accurate.
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Engineering, Biomedical & Chemical Engineering; thin film nitinol; carotid artery; micro mesh stent; micropatterning
Online: 1 November 2016 (06:54:40 CET)
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Stenting is an alternative to endarterectomy for the treatment of carotid artery stenosis. However, stenting is associated with a higher risk of procedural stroke secondary to distal thromboembolism. Hybrid stents with a micromesh layer have been proposed to address this complication. We developed a micropatterned thin film nitinol (M-TFN) covered stent designed to prevent thromboembolism during carotid intervention. This innovation may obviate the need or work synergistically with embolic protection devices. The proposed double layered stent is low-profile, thromboresistant, and covered with a M-TFN that can be fabricated with fenestrations of varying geometries and sizes. The M-TFN was created in multiple geometries, dimensions, and porosities by sputter deposition. The efficiency of various M-TFN to capture embolic particles was evaluated in different atherosclerotic carotid stenotic conditions through in vitro tests. The covered stent prevented emboli dislodgement in the range of 70-96% during 30min duration tests. In vitro vascular cell growth study results showed that endothelial cell elongation, alignment and growth behaviour silhouettes significantly enhance specifically on the diamond-shape M-TFN with the dimensions of 145µm×20µm and a porosity of 32%. Future studies will require in-vivo testing. Our results demonstrate that M-TFN has a promising potential for carotid artery stenting.
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Engineering, Biomedical & Chemical Engineering; tissue-like phantoms; dual-modal imaging; fluorescence lifetime (FLT); FLT imaging (FLIM); diffusion reflection
Online: 27 October 2016 (11:52:21 CEST)
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Tissue-like phantoms are widely used as a model for mimicking the optical properties of live tissue. This paper presents the results of a diffusion reflection method as well as fluorescence lifetime imaging microscopy measurements of fluorescein-conjugated gold nanorods in solution as well as inserted in solid tissue-imitating phantoms. A lack of consistency between the fluorescence lifetime results of the solutions and the phantoms raises a question about the ability of tissue-like phantoms to maintain the optical properties of inserted contrast agents.
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Engineering, Biomedical & Chemical Engineering; triaxial accelerometer; wearable devices; fall detection; mobile health-care; SisFall
Online: 22 October 2016 (11:20:53 CEST)
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Research on fall and movement detection with wearable devices has witnessed promising growth. However, there are few publicly available datasets, all recorded with smartphones, that prevent authors to evenly compare their new proposals. Here, we present a dataset of falls and activities of daily living (ADL) acquired with a self-developed device composed of two types of accelerometer and one gyroscope. It consists of 19 ADL and 15 fall types performed by 23 young adults, 15 ADL types performed by 14 healthy and independent participants over 62 years old, and data from one participant of 60 years old that performed all ADL and falls. These activities were selected based on a survey and a literature analysis. We test the dataset with widely used feature extraction and a simple to implement threshold based classification, achieving up to 96~\% of accuracy in fall detection. An individual activity analysis demonstrates that most errors coincide in a few number of activities where algorithms could be focused on. Finally, validation tests with elderly people significantly reduced the fall detection performance of the tested features. This validates findings of other authors and encourages to develop new strategies with this new dataset as benchmark.
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Engineering, Biomedical & Chemical Engineering; Brain-computer interface (BCI); visual motion perception; neurotechnology application; EEG; realtime brain signal decoding
Online: 4 October 2016 (14:43:48 CEST)
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The paper presents a study of two novel visual motion onset stimulus-based brain–computer interfaces (vmoBCI). Two settings are compared with afferent and efferent to a computer screen center motion patterns. Online vmoBCI experiments are conducted in an oddball event–related potential (ERP) paradigm allowing for “aha–responses” decoding in EEG brainwaves. A subsequent stepwise linear discriminant analysis classification (swLDA) classification accuracy comparison is discussed based on two inter–stimulus–interval (ISI) settings of 700 and 150 ms in two online vmoBCI applications with six and eight command settings. A research hypothesis of classification accuracy non–significant differences with various ISIs is confirmed based on the two settings of 700 ms and 150 ms, as well as with various numbers of ERP response averaging scenarios.The efferent in respect to display center visual motion patterns allowed for a faster interfacing and thus they are recommended as more suitable for the no–eye–movements requiring visual BCIs.
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Engineering, Biomedical & Chemical Engineering; DCMS, DCMSP, and sputtering; highly ionized pulse plasma magnetron sputtering (HIPIMS); bacterial inactivation kinetics; Cu and TiO2 synergic effects; interfacial charge transfer
Online: 16 September 2016 (13:31:00 CEST)
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This review focuses on Cu/TiO2 sequentially and Cu-TiO2 co-sputtered catalytic/photocatalytic surfaces leading to bacterial inactivation discussing their stability, synthesis, adhesion and antibacterial kinetics. The intervention of TiO2, Cu and the synergic effect of Cu and TiO2 on films prepared by a colloidal approach and other techniques is also reviewed leading to bacterial inactivation. Processes in aerobic media and anaerobic media leading to bacterial loss of viability on multidrug resistant (MDR) pathogens, Gram-negative (-) and Gram-positive(+) bacteria are described. Insight is provided for the interfacial charge transfer mechanism under solar irradiation occurring between TiO2 and Cu. surface properties of 2D TiO2/Cu and TiO2-Cu films are correlated with the bacterial inactivation kinetics observed in the dark and under light. The intervention of these antibacterial sputtered surfaces in health-care facilities leading to MRSA-isolates is described in the dark and under the actinic light. The synergic intervention of the Cu and TiO2 films leading to bacterial inactivation prepared by direct current magnetron sputtering (DCMS), pulsed direct current magnetron sputtering (DCMSP) and highly ionized pulse plasma magnetron sputtering (HIPIMS) is reported in a detailed way.
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Engineering, Biomedical & Chemical Engineering; fractal dimension; carotid plaque characterization; three dimensional ultrasound; an evaluation of the vulnerability of the plaques
Online: 1 September 2016 (10:48:18 CEST)
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Carotid atherosclerotic lesions are a major cause of cerebrovascular disease (CVD). Identification and quantification of carotid plaques are important for categorizing the vulnerability of plaques for rupture and assessing the impact of treatments. The irregularity of plaque surface is associated with previous plaque rupture and plays an important role in the risk of stroke. Thus, the aim of this study is to develop and validate novel vulnerability biomarkers from three-dimensional ultrasound (3DUS) images by analyzing the surface morphological characterization of carotid plaque using fractal geometry features. 3D box-counting and 3D blanket are the two types of 3D fractal dimension that were employed to describe the smoothness of plaques. This fractal dimension analysis tool was used to evaluate the effect of atorvastatin using 3DUS carotid images, which were acquired from 6 patients treated with atorvastatin with 80 mg daily and 5 patients with placebo. The Student's T Test results showed that those two fractal features were effective for detecting the statin-related changes in carotid atherosclerosis with p<0.0068 and p<0.015 respectively, suggesting that 3D fractal dimension measurements can be used effectively to analyze the surface characteristics of carotid plaques, especially for evaluating the impact of the treatment.
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Engineering, Biomedical & Chemical Engineering; impulse radar; ultra-wideband (UWB); noncontact; short-range; healthcare; respiration; heartbeat; SNR; ensemble empirical mode decomposition (EEMD); continuous-wavelet transform (CWT)
Online: 25 August 2016 (08:57:22 CEST)
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The designed radar sensor realizes the healthcare monitoring capable of short-range to detect the chest-wall movement of the subject caused by cardiopulmonary activities, and wirelessly estimating the distance from the sensor to the subject without any devices being attached to the body. Ensemble empirical mode decomposition (EEMD) based denoise method and 1-D continuous-wavelet transform (CWT) are applied for improving on the detection SNR so that accurate respiration rate and heartbeat rate can be acquired in time domain or frequency domain with further distance. No choosing the conventional Doppler radar only able to capture the Doppler signatures due to the lack of bandwidth information as noncontact sensor, we take full advantages of ultra-wideband (UWB) impulse radar to make it low power consumed and portable conveniently, with flexible detection range and preferable accuracy. This noncontact healthcare sensor system addressed proves the commercial feasibility and vast availability of using compact impulse radar for emerging biomedical applications. Compared with traditional contact measurement devices, experimental results utilizing the 2.3 GHz bandwidth transceiver, demonstrate 100% similar results.