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Biology, Agricultural Sciences & Agronomy; intercropping; microbial community; high throughput sequencing; nifH gene; sugarcane
Online: 17 October 2018 (12:20:19 CEST)
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Intercropping significantly improves land use efficiency and soil fertility. This study examines the impact of three cultivation systems (monoculture sugarcane, peanut-sugarcane and soybean-sugarcane intercropping) on soil properties and diazotrophs. Sugarcane rhizosphere soil was sampled from the farmers’ field. Soil properties and nifH gene abundance were analyzed by high throughput sequencing. Moreover, a total of 436,458 nifH gene sequences were obtained and classified into the 3201 unique operational taxonomic units (OTUs). Maximum unique OTUs resulted with soybean-sugarcane intercropping (<375). The dominant groups across all cultivation were Alpha-proteobacteria and Beta-proteobacteria. On the basis of microbial community structure, intercropping systems were more diverse than monoculture sugarcane. In the genus level, Bradyrhizobium, Burkholderia, Pelomonas, and Sphingomonas were predominant in the intercropping systems. Moreover, diazotrophic bacterial communities of these cultivation systems were positively correlated to the soil pH and soil enzyme protease. Moreover, low available P recovered from intercropping system showed a strong correlation with higher nutrient uptake activity of soil microbes. Based on the results, our investigation concluded that intercropping system caused a positive effect on the growth of diazotrophic bacterial communities and it might boost the soil fertility and this kind of study helps to develop an eco-friendly technology for sustainable sugarcane production.
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Biology, Agricultural Sciences & Agronomy; biochar; surface area; enzyme activity; immobilization; protein assay
Online: 11 October 2018 (09:49:15 CEST)
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Extracellular enzymes catalyze biogeochemical reactions in soil, cycling carbon and nutrients in agricultural systems. Enzymes respond quickly to soil management, including organic amendment inputs, such as biochar, a charcoal-like solid byproduct of bioenergy production. In a previous agricultural field trial, a pine biochar amendment caused an approximately 40% decrease in the enzyme activities of β-glucosidase (BG) and phosphatase (PHOS). The large surface area of the pine biochar has the potential to sorb nutrients and other organic molecules. To test if sorption caused decreased enzyme activity, we used a laboratory assay to quantify the activity of two sorbed enzymes: BG and acid PHOS, involved in the cycling of carbon and phosphorous. The enzymes were incubated with three solid phases: (1) the high surface area pine biochar, (2) the agricultural soil, and (3) a low surface area grass biochar, for an additional comparison. We quantified the sorbed enzymes at pH 6, 7, and 8, using a Bradford protein assay, and measured the immobilized enzyme activities via high-throughput fluorometric analysis. After sorption onto pine biochar, detectable BG and PHOS activity levels dropped by over 95% relative to the soil, supporting direct sorption as one mechanism that reduces enzyme activity in biochar amended soil. This laboratory assay demonstrated that sorption could account for the lack of priming of native soil organic matter and changes in soil phosphorous cycling after pine biochar addition.
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Biology, Agricultural Sciences & Agronomy; agricultural stakeholders; extension; multivariate analysis; socio-ecological systems; mental models; sustainable agriculture
Online: 9 October 2018 (08:03:38 CEST)
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The sustainability of agriculture depends as much on the natural resources required for production as it does on the stakeholders that manage those resources. It is thus essential to understand the variables that influence the decision-making process of agricultural stakeholders to design educational programs, interventions, and policies geared towards their specific needs, a required step to enhance agricultural sustainability. We examined the perceptions, experiences, and priorities that influence management decisions of five major groups of agricultural stakeholders (conventional small grain producers, organic small grain producers, organic vegetable producers, extension agents and agro-industry crop consultants, and researchers) across the Montana, United States. Results revealed that while stakeholder groups have distinct perceptions, experiences, and priorities, there were similarities across groups. Specifically, organic vegetable and organic small grain producers showed similar responses that were, in turn, divergent of conventional producers, researchers, and crop consultants. Conventional small grain producers and researchers showed overlapping response patterns while crop consultants formed an isolated group. Our results reinforce the need for agricultural education and programs that address unique and shared experiences, priorities, and concerns of multiple stakeholder groups. This study endorses the call for a paradigm shift from the traditional top-down agricultural extension model to one that accounts for participants’ socio-ecological contexts to facilitate the adoption of sustainable agricultural systems that support environmental and human wellbeing.
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Biology, Agricultural Sciences & Agronomy; irrigation scheduling; Solanum lycopersicum; El Niño; water stress; decision support system; climate variability
Online: 30 September 2018 (07:48:20 CEST)
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Irrigation scheduling is used by growers to determine the right amount and timing of water application. In most parts of Mozambique, 90% of the total yearly precipitation occurs from November to March. The El Niño Southern Oscillation (ENSO) phenomenon influences the climate in Mozambique and affects the water demand for crop production. The objectives of this work were to quantify the effects of ENSO phenomenon on tomato crop water requirements, and to create the AgroClimate irrigation tool (http://mz.agroclimate.org/) to assist farmers in improving irrigation management. This study was based on daily grid-based climate information from 1983 to 2016 from the Climate Forecast System Reanalysis. Daily crop evapotranspiration was calculated by Hargreaves equation and crop coefficients. This tool is available online and considers different planting dates, ENSO phases, and crop growing season lengths. Irrigation needs varied from less than 250 mm per growing cycle during winter to 550 mm during spring. Both El Niño and La Niña influenced the irrigation scheduling, especially from November to March. El Niño periods were related with increased water demand due to drier and warmer conditions while the opposite was observed for La Niña. The ENSO information might be used to understand climate variability and improve tomato irrigation scheduling in Mozambique.
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Biology, Agricultural Sciences & Agronomy; water footprint, crop water usage, oil palm (Eleasis guenensis), crop ages, soil type, environmental sustainability
Online: 28 September 2018 (12:21:52 CEST)
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Various environmental challenges, related to oil palm commodity has became a major environmental challenge to oil palm production. The aim and objective of this study is to analyze the actual water footprint of oil palm based on root water uptake under varying crop age and soil type. The research was conducted in Pundu Village, Central Kalimantan. The methodology adopted in carrying out this study consists of various stages which includes observing soil moisture, rainfall, and water table, ETo, root water uptake and oil palm water footprint. The highest rate of water consumption was the 13 years oil palm on spodosol soil type with an average daily rate of 3.73 mm/day. The lowest evapotranspiration was represented by the 7th year oil palm on spodosol with an average rate of 3.07 mm/day. The total water footprint value obtained was between 0.56 – 1.14 m3/kg for a variety of plants with various age and soil types. It can be deduced that the water footprint value of oil palm vary for different crop age and soil types on temporal scale. The study also presented that the source of green water from the first root zone of oil palm deliver the highest contribution for oil palm root water uptake.
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Biology, Agricultural Sciences & Agronomy; Zea may L.; bioactive compound; floral corn; by-products; bee pollen
Online: 26 September 2018 (16:31:15 CEST)
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Corn tassel is a by-product from hybrid corn seed production and a new source of phytochemicals including compounds with antioxidant activity. Four tassel development stages were evaluated in eight commercial corn varieties. Corn varieties and tassel developmental stages showed significant variations (P0.01) for all parameters. Total phenolic content and antioxidant activity were highest in field corn. KGW1, a purple waxy variety, had the highest anthocyanin content and carotenoid content at tassel development stages at 50% and 75% of pollen shed, whereas the tassel developmental stages at the 1st day of pollen shed and 50% of pollen shed had the highest of anthocyanin yield and carotenoid yield. The most suitable time for tassel harvest should be between the 1st day of pollen shed to 50% of pollen shed. Phytochemicals and antioxidants that are extracted from corn tassel can be used as a functional food supplement, natural pharmaceuticals and cosmetic products.
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Biology, Agricultural Sciences & Agronomy; Fusarium graminearum, mold growth, linear model, Gompertz, Baranyi.
Online: 14 September 2018 (16:05:54 CEST)
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Fusarium graminearum causes head blight in wheat and corn, and produces chemicals harmful for humans and other animals. It is important to understand how it grows in order to prevent outbreaks. There are 3 well-known growth models for microorganisms and they seem applicable to molds: linear, Gompertz and Baranyi. This study aimed to see which could better represent F. graminearum growth. Three replicates were grown in yeast extract agar (YEA) for 20 days. The Feret’s radius was measured in ImageJ software, and then related to the models. Linear model was the most closely correlated to the actual growth. Thus, considering that it was the most representative of the reality and it is easier to use, it seems to be the best logical choice for F. graminearum growth studies.
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Biology, Agricultural Sciences & Agronomy; Fusarium graminearum; color; pigments; polyketides; carotenoids
Online: 14 September 2018 (13:20:34 CEST)
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Several studies explore in depth the biochemistry and genetics of the pigments present in Fusarium graminearum but there is a need to discuss about their relationship with the mold’s observable surface color pattern variation throughout its lifecycle. Furthermore, they require basic cataloguing and description of their major features known so far. Colors are a viable alternative to size measurement in growth studies. When grown on yeast extract agar (YEA) at 25 °C, F. graminearum initially exhibits a whitish mycelium, developing into a yellow-orange mold by the sixth day and then turning into wine-red. The colors are likely due to accumulation of the golden yellow polyketide aurofusarin and the red rubrofusarin, but the carotenoid neurosporaxanthin possibly play also a major role in the yellow or orange coloration. Torulene might contribute for red tones but it perhaps ends up being converted into neurosporaxanthin. Culmorin is also present but it does not contribute for the color, though it was initially isolated in pigment studies, and there is the 5-deoxybostrycoidin-based melanin, but it occurs mostly in the teleomorph’s perithecium. There is still a need to chemically quantify the pigments throughout the lifecycle, analyze their relationships and how much each impacts F. graminearum surface color.
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Biology, Agricultural Sciences & Agronomy; Agroforestry; ecosystem services; measurable criteria; certification standard; biodiversity; agroecosystem; regenerative agriculture
Online: 12 September 2018 (15:56:22 CEST)
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Agroforestry is increasingly being recognized as a holistic food production system that can have numerous significant environmental, economic, and social benefits. This growing recognition is paralleled in the U.S. by the budding interest in regenerative agriculture and motivation to certify regenerative practices. Current efforts to develop a regenerative agriculture certification offer an opportunity to consider agroforestry’s role in furthering regenerative goals. To understand this opportunity, we first examine how agroforestry practices can advance regenerative agriculture’s five core environmental concerns: soil fertility and health, water quality, biodiversity, ecosystem health, and carbon sequestration. Next, we review a subset of certification programs, standards, guidelines, and associated scientific literature to understand existing efforts to standardize agroforestry. We determine that development of an agroforestry standard alongside current efforts to certify regenerative agriculture offers an opportunity to leverage common goals and strengths of each. Additionally, we determine that there is a lack of standards with measurable criteria available for agroforestry, particularly in temperate locations. Lastly, we propose a framework and general, measurable criteria for an agroforestry standard that could potentially be implemented as a standalone standard or built into existing agriculture, forestry, or resource conservation certification programs.
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Biology, Agricultural Sciences & Agronomy; groundwater salinization; soil salinization; salinization risk assessment; climate analysis; water balance; salinity balance; salt leaching; processing tomato; crop yield decrease.
Online: 11 September 2018 (17:29:31 CEST)
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Mediterranean climate is marked by arid climate conditions in summer, therefore, crop irrigation is crucial to sustain plant growth and productivity in this season. If groundwater is utilized for irrigation, an impressive water pumping is needed to satisfy crop water requirements at catchment scale. Consequently, irrigation water quality gets worse, specifically considering groundwater salinization near the coastal areas due to seawater intrusion, also triggering soil salinization.
With reference to an agricultural coastal area in the Mediterranean basin (Southern Italy), close to the Adriatic sea, an assessment of soil salinization risk due to processing tomato cultivation was carried out. A simulation model was arranged to perform, on daily basis, a water and salt balance along the soil profile. Long-term weather data and soil physical parameters representative of the considered area were utilized in applying the model, also considering three salinity levels of irrigation water.
Based on the climatic analysis performed and the model outputs, the probability of soil salinity came out very high, such as to seriously threaten tomato yield. Autumn-winter rainfall resulted frequently insufficient to leach excess salts away from the soil profile and reach sustainable conditions of tomato cultivation. Therefore, alternative cropping strategies were prospected.
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Biology, Agricultural Sciences & Agronomy; crop modelling; DSSAT; climate variability; survey; maize; crop guidelines/cropping calendar
Online: 10 September 2018 (08:13:47 CEST)
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Rain-fed maize production has significantly declined in Zimbabwe especially in semi-arid and arid areas causing food insecurity. Erratic rainfall received associated with mid-season dry spells largely contribute to low and variable maize yields. This study involved a survey of current farmers’ cropping practices, analyses of climatic data (daily rainfall and daily minimum and maximum temperature) of Hwedza station and simulation of maize yield response to climate change using DSSAT CERES crop growth simulation model. The climatic and maize yield data was analysed using mean correlation and regression analyses to establish relationships between rainfall characteristics and maize yield in the study area. Survey results showed that maize was the staple food grown by 100% of the farming households while 8.7% also grew sorghum. The survey concludes that 56.2% of the farmers grew short season varieties, 40.2% medium season varieties and 3.6% long season varieties. The result of the correlation analysis of climatic data and maize yield showed that number of rain days had strong positive relationship (r = 0.7) with maize yield. Non-significant yield differences (p > 0.05) between maize cultivar and planting date criteria were obtained. Highest yields were obtained under the combination of medium season maize cultivar and the DEPTH criterion in all simulations. The range of simulated district average yields of 0.4 t/ha to 1.8 t/ha formed the basis for the development of an operational decision support tool (cropping calendar).
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Biology, Agricultural Sciences & Agronomy; rice; OsCDPK1; grain size; amylose content; endosperm appearance
Online: 3 September 2018 (17:00:14 CEST)
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Overexpression of a constitutively active truncated form of OsCDPK1 (OEtr) in rice produced smaller seeds, but a double-stranded RNA gene-silenced form of OsCDPK1 (Ri) yielded large seeds, suggesting that OsCDPK1 plays a functional role in rice seed development. In the study presented here, we propose a model in which OsCDPK1 plays key roles in negatively controlling the grain size, amylose content, and endosperm appearance, and also affects the physicochemical properties of the starch. The dehulled transgenic OEtr grains were smaller than the dehulled wild-type grains, and the OEtr endosperm was opaque and had a low amylose content and numerous small loosely packed polyhedral starch granules. However, the OEtr grain sizes and endosperm appearances were not affected by the temperature being either optimal (25 °C ) or low (22 °C) or high (31 °C) during the grain-filling phase. In contrast, the transgenic Ri grains were larger, had higher amylose contents, and had more transparent endosperms filled with tightly packed polyhedral starch granules. This demonstrates that OsCDPK1 plays a novel functional role in starch biosynthesis during seed development and affects the transparent appearance of the endosperm. These results improve our understanding of the molecular mechanisms through which the grain filling process occurs in rice.
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Biology, Agricultural Sciences & Agronomy; GRAMI model; remote sensing; rice yield; satellite imagery; vegetation index
Online: 3 September 2018 (11:33:37 CEST)
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The Geostationary Ocean Color Imager (GOCI) of the Communication, Ocean, and Meteorological Satellite (COMS) increases the chance of acquiring images with greater clarity at eight times a day and is equipped with spectral bands suitable for monitoring crop yield with a moderate spatial resolution. The objectives of this study were to classify nationwide paddy fields and to project rice (Oryza sativa) yield and production using the grid-based GRAMI-rice model and GOCI satellite products over South Korea from 2011 to 2014. Solar insolation and temperatures were obtained from COMS and the Korea local analysis and prediction system for model inputs, respectively. The paddy fields and transplanting dates were estimated using Moderate Resolution Imaging Spectroradiometer (MODIS) reflectance and land cover products. The crop model was calibrated using observed yield data in 11 counties and was applied to 62 counties in South Korea. The overall accuracies of the detected paddy fields ranged from 89.5 to 90.2%. The simulated rice yields statistically agreed with observed yields, with root-mean-square errors of 0.219 to 0.451 ton ha-1 and Nash–Sutcliffe efficiencies of 0.241 to 0.733 in four years, respectively. According to paired t-tests (α = 0.05), the simulated and observed rice yields were not significantly different. These results demonstrate the possible development of a crop information delivery system that can classify land cover, simulate crop yield, and monitor regional crop production on a national scale.
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Biology, Agricultural Sciences & Agronomy; Landraces, indigenous, accession, seed characters, diversity, faba bean
Online: 30 August 2018 (14:01:36 CEST)
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Faba bean (Vicia faba L.) is one of the popular pulse crops grown for traditional consumption, not only in Oman but also in Arabian Peninsula and other countries. In Oman, the famers living in and around high altitude mountain areas mostly grow it. This paper highlights features of variation in seed color and diversity in seed traits found in collected accessions from the joint collecting missions of 2008-2010 between the staff of College of Agriculture, Sultan Qaboos University and the Ministry of Agriculture & Fisheries throughout all the governorates of the Sultanate of Oman. 41 seed samples/accessions were collected from 38 sites. Of these, the highest number of accessions was collected from Batinah South governorate (38) represented mostly by the mountains of Rustaq, followed by the mountains of Interior/Al-Dakhliyah (8), and Dhahira & Buraimi (4). Only one accession was collected from mountains of the Eastern/ Al-Sharqiyah governorates. The seed accessions were found diverse with respect to all seed characters studied, i.e. seed length (cm) and width (cm) and 1000-seed weight (g) besides seed color. The faba bean accessions were classified into 9 genetically diverse clusters based on the Principal Component Analysis, which indicated that the contribution of seed width and 100-seed weight to the total variation existing in indigenous germplasm collected from all the governorates of Oman. It was found from the critical analysis of seed colors that 38 accessions were homogenous (pure) with one color and three were heterogeneous with combinations of colors.
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Biology, Agricultural Sciences & Agronomy; mesocosm; irrigation canal; irrigation channel; degradation; biodegradation; persistence; aquatic weed
Online: 29 August 2018 (10:58:03 CEST)
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Endothall dipotassium salt and monoamine salt are herbicide formulations used for controlling submerged aquatic macrophytes and algae in aquatic ecosystems. Microbial activity is the primary degradation pathway for endothall. To better understand what influences endothall degradation, we conducted a mesocosm experiment to 1) evaluate the effects of different water and sediment sources on degradation, and 2) determine if degradation was faster in the presence of a microbial community previously exposed to endothall. Endothall residues were determined with LC-MS at intervals to 21 days after endothall application. Two endothall isomers were detected. Isomer-1 was abundant in both endothall formulations, while isomer-2 was only abundant in the monoamine endothall formulation and was more persistent. Degradation did not occur in the absence of sediment. In the presence of sediment degradation if isomer-1 began after a lag phase of 5-11 days and was almost complete by 14 days. Onset of degradation occurred 2-4 days sooner when the microbial population was previously exposed to endothall. We provide direct evidence that the presence and characteristics of sediment are of key importance in the degradation of endothall in an aquatic environment, and that monoamine endothall has two separate isomers that have different degradation characteristics.
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Biology, Agricultural Sciences & Agronomy; WHR; SLW; PsaA; PsbA
Online: 27 August 2018 (10:02:31 CEST)
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Supplementary lighting is commonly used in high-quality seedling production. In this study, grafted tomato seedlings were grown for 10 days in a glasshouse with a 16-hour daily supplementary lighting at 100 μmol·m−2·s−1 PPFD from either high pressure sodium (HPS), metal halide (MH), far-red (FR), white LEDs (W), or mixed LEDs (W1R2B1) to determine which light sources improve the seedling quality. The control did not have any supplementary light. The physiological parameters and the expression of genes related to photosynthesis were analyzed. The results show that the root length, biomass, number of leaves, chlorophyll (SPAD), dry weight to height ratio (WHR) of the scion, and specific leaf weight (SLW) were the greatest for grafted seedlings grown in W1R2B1. The level of root ball formation was the greatest for seedlings grown in W1R2B1, followed by those grown in W, HPS, and MH. Seedlings grown in FR did not fare very well, as they were very thin and weak. Moreover, the expression of two photosynthetic genes (PsaA and PsbA) was significantly increased by W1R2B1 and W, which suggests that the plastid or nuclear genes might be regulated. The overall results suggest that W1R2B1 was the most suitable light source to enhance the quality of grafted tomato seedlings. The results of this study could be used as a reference for seedling production in glasshouses, and provide new insights in the research of lights affecting the development of plants.
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Biology, Agricultural Sciences & Agronomy; Landsat8; multi-temporal; crops statistics; land use land cover; Pakistan
Online: 21 August 2018 (14:25:17 CEST)
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Developing countries like Pakistan is among those where lack of adoption to science and technology advancement is a major constraint for Satellite Remote Sensing use in crops and land use land cover digital information generation. Exponential rise in country population, increased food demand, limiting natural resources coupled with migration of rural community to urban areas had further led to skewed official statistics. This study is an attempt to demonstrate the possible use of freely available satellite data like Landsat8 under complex cropping system of Okara district of Punjab, Pakistan. An Integrated approach has been developed for the satellite data based crops and land use/cover spatial area estimation. The resultant quality was found above 96% with Kappa statistics of 0.95. Land utilization statistics provided detail information about cropping patterns as well as land use land cover status. Rice was recorded as most dominating crop in term of cultivation area of around 0.165 million ha followed by autumn maize 0.074 million ha, Fallow crop fields 0.067 million ha and Sorghum 0.047 million ha. Other minor crops observed were potato, fodder and cotton being cultivated on less than 0.010 million ha. Population settlements were observed over an area of around 0.081 million ha of land.
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Biology, Agricultural Sciences & Agronomy; irrigation; technology adoption; farmers’ innovation; diffusion
Online: 15 August 2018 (06:08:07 CEST)
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In 2013, thirty-eight treadle pumps (TPs) were installed as low-cost technology introduction for small-scale irrigation in eastern Ethiopia. This pilot project also trained six farmers on tube well excavation, installation and maintenance of pumps. In June 2015, researchers visited nine of the 38 TP villages, and found only two functional TPs. The rest were replaced with a new technology developed by the trained farmers. Adopters of the new technology stated that the limited water output and high labor demand of the conventional TP did not optimally fulfil their irrigation water requirements. The new technology had spread quickly to more than one hundred households due to three key factors. First, farmers’ innovative modifications of the initial excavation technique addressed the discharge limitations of the conventional TP by excavating boreholes with wider diameter. Second, local ownership of the new technology, including skills used in well drilling and manufacturing excavation implement, made the new irrigation technology affordable and accessible to the majority of households. Third, this innovation spread organically without any external support, confirming its sustainability. Farmers, empowered by training, gained more control in developing technology options tailored to local needs and conditions of their communities.
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Biology, Agricultural Sciences & Agronomy; Mozambique; dairy; research
Online: 13 August 2018 (08:27:29 CEST)
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The Mozambican dairy industry landscape is not well known because the research about it presents numerous inconsistencies. These inconsistencies are possibly due to miscommunication between scholars, entrepreneurs, the government and other actors, besides major events such as the civil war and policy changes and overall lack of coordination. This study aimed to catalog and relate the major studies and findings in the Mozambican dairy research, contextualize them historically, analyze the implications and provide hints for future researchers. Dairy research seemed intimately related to the industry’s development, and it has been dependent on the country’s sociopolitical changes and opportunities. Social and economic studies are more abundant, perhaps because the dairy industry is emerging, thriving to stand out in a very competitive environment, but there are also studies in applied sciences, especially microbiology and chemistry. There are promising directions to follow such as the improvement of herding techniques (e.g. feeding, disease control), multidisciplinary synergies or exploration of traditional dairy products such as masse. Also, it would be important for institutions to share their research through electronic platforms, even the information published prior to the existence of the worldwide web.
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Biology, Agricultural Sciences & Agronomy; Triticum durum, cropping systems, microbiome, fertilization, tillage, breeding, environmental footprint
Online: 5 August 2018 (14:04:57 CEST)
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The global demands for various grains including durum wheat (Triticum durum Desf.) are expected to increase substantially in the coming years due to ever-growing human population’s needs for food, feed and fuel. Thus, providing consistent or increased durum grain to the world market is one of the priorities for policy-makers, researchers, and farmers. What are the major achievements in agronomic advancement for durum wheat cultivation in recent decades? How might the current cropping systems be improved to increase crop yield and quality and improve resource use efficiencies while minimizing input costs and decreasing negative impact on the environment? Canada is one of the major durum wheat producers in the world, as Canada contributes about 50% to global trade of durum grain. Canada’s research achievements in durum wheat might serve as a guide for advancing the cultivation of the crop in other regions/countries on the planet. This review summarizes the major Canadian research findings in the aspects of durum wheat agronomics during the period 2001 to 2017 years. It highlights the main advancements in seeding and tillage, crop rotation and diversification, and use of pulse-induced microbiomes to improve soil health and feedback mechanism. The genetic gain and breeding for resistance against abiotic and biotic stresses are discussed. Finally, we identified main constraints and suggested some near-term research priorities. The research findings highlighted in this review will be of use for other areas on the planet to increase durum wheat productivity, improve soil fertility and health, and enhance long-term sustainability.
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Biology, Agricultural Sciences & Agronomy; firmness; Vaccinium; ripening; cell wall; crispy; quantitative genetics; breeding; molecular markers; genome editing
Online: 5 August 2018 (12:11:33 CEST)
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Blueberry (Vaccinium spp.) has been recognized worldwide as a valuable source of health-promoting compounds, becoming a crop with some of the fastest rising consumer demand trends. Fruit firmness is a key target for blueberry breeding as it directly affects fruit quality, consumer preference, transportability, shelf life, and the ability of cultivars to be machine harvested. Fruit softening naturally occurs during berry development, maturation, and postharvest ripening. However, some genotypes are better at retaining firmness than others, and some are crispy, which is a putatively extra-firmness phenotype that provides a distinct eating experience. In this review, we summarized important studies addressing the firmness trait in blueberry, focusing on physiological and molecular changes affecting this trait at the onset of ripening and also the genetic basis of firmness variation across individuals. New insights into these topics were also achieved by using previously available data and historical records from the blueberry breeding program at the University of Florida. The complex quantitative nature of firmness in an autopolyploid species such as blueberry imposes additional challenges for the implementation of molecular techniques in breeding. However, we highlighted some recent genomics-based studies and the potential of a QTL mapping analysis and genome editing protocols such as CRISPR to further assist and accelerate the breeding process for this important trait.
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Frank You,
Jin Xiao,
Pingchuan Li,
ZHEN YAO,
Gaofeng Jia,
Liqiang He,
Santosh Kumar,
Braulio Soto-Cerda,
Scott Duguid,
Helen Booker,
Khalid Rashid,
Sylvie Cloutier
Biology, Agricultural Sciences & Agronomy; flax; genome-wide association study (GWAS); selective sweep; genotyping by sequencing (GBS); bi-parental population; single nucleotide polymorphism (SNP); seed yield; plant height; maturity; fatty acid composition
Online: 3 August 2018 (17:34:24 CEST)
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A genome-wide association study (GWAS) was performed on a set of 260 lines which belong to three different bi-parental flax mapping populations. These lines were sequenced to an averaged genome coverage of 19× using the Illumina Hi-Seq platform. Phenotypic data for 11 seed yield and oil quality traits were collected in eight year/location environments. A total of 17,288 single nucleotide polymorphisms were identified, which explained more than 80% of the phenotypic variation for days to maturity (DTM), iodine value (IOD), palmitic (PAL), stearic, linoleic (LIO) and linolenic (LIN) acid contents. Twenty-three unique genomic regions associated with 33 QTL for the studied traits were detected, thereby validating four genomic regions previously identified. The 33 QTL explained 48-73% of the phenotypic variation for oil content, IOD, PAL, LIO and LIN but only 8-14% for plant height, DTM and seed yield. A genome-wide selective sweep scan for selection signatures detected 114 genomic regions that accounted for 7.82% of the flax pseudomolecule and overlapped with the 11 GWAS-detected genomic regions associated with 18 QTL for 11 traits. The results demonstrate the utility of GWAS combined with selection signatures for dissection of the genetic structure of traits and for pinpointing genomic regions for breeding improvement.
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Biology, Agricultural Sciences & Agronomy; cotton, vegetation antibroadleaf herbicides, cultivars, fat content
Online: 1 August 2018 (13:16:31 CEST)
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In this study was investigate the effect of vegetative treatment with the herbicides Basagran 480 SL, Pulsar 40 and Express 50 WG on the fat content of seeds of different Bulgarian cotton cultivars. The experiment was carried out with twelve Bulgarian cotton cultivars - Chirpan-539, Helius, Trakia, Vicky, Philipopolis, IPK-Veno, Boyana, Avangard, Natalia, Darmy, Dorina and Nelina belonging to Gossypium hirsutum L. For the first time in the world, cotton cultivars resistant to herbicides Basagran 480 SL (bentazone), Pulsar 40 (imazamox) and Express 50 WG (Tribenuron-methyl) have been established. They are applied at the bud formation stage of cotton. Fat content in cotton seeds was determined by extraction - SR ISO 6492. For the first time in the world it has been established that in the vegetative treatment with herbicides the most valuable with regard to cottonseed fat content are all cultivars treated with Basagran 480 SL, except Chirpan-539 and Helius. It has been established for the first time that from the point of view of growing technology with vegetative treatment with the herbicide Express 50 WG, the most valuable are the cultivars Chirpan-539, Helius, Trakia, Vicky, Philipopolis, IPK-Veno, Boyana, Avangard, Natalia. None of the cultivars is highly rated when treated with the herbicide Pulsar 40 with regard to fat content in seeds.
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Milad Heydari,
Anna Zanfardino,
Alireza Taleei,
Ali Akbar Shah-NejatBoushehri,
Javad Hadian,
Viviana Maresca,
Sergio Sorbo,
Michela Di Napoli,
Mario Varcamonti,
Adriana Basile,
Daniela Rigano
Biology, Agricultural Sciences & Agronomy; Mentha x piperita; Mentha x arvensis; essential oils; heat stress; antibacterial activity; monoterpenes
Online: 27 July 2018 (16:04:14 CEST)
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Heat stress affects the yield of medicinal plants and can reduce biomass and/or metabolite production. In order to evaluate the effect of heat-induced stress on the essential oil production in Mentha x piperita L. var. Mitcham (Mitcham mint) and Mentha x arvensis var. piperascens Malinv. ex L. H. Bailey (Japanese mint), we studied the chemical composition of the oils of the two mint species under different heat shock stress in growth chambers. The antibacterial activity of the essential oils was also evaluated; microscopic observation (fluorescence and electron transmission) was used to assess the effect of the tested samples on bacterial growth. The results obtained shed light on the mint essential oils composition and biological activity in relation to heat stress.
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Biology, Agricultural Sciences & Agronomy; bioavailability; Fe; nitrogen deficiency; phosphorous deficiency; phytic acid; wheat; Zn
Online: 26 July 2018 (05:40:56 CEST)
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Iron (Fe) and zinc (Zn) deficiency in cereal grains has deleterious effects on the health of millions of people, especially in developing countries. As wheat, as a staple crop, is consumed in large quantities, its micronutrient content is important. Crops in Africa are often grown under low nitrogen (N) and low phosphorous (P) conditions. The aim of this study was to determine the effect of low N and low P stress on Fe and Zn and phytic acid concentration, in two commercial spring wheat cultivars with excellent baking quality. The two cultivars did not differ significantly for the measured characteristics. Across all treatments the average values for Fe varied between 19.60-28.61 mg kg-1, Zn between 17.68-33.79 mg kg-1 and phytic acid between 5.03-6.92 mg g-1. Low P stress lead to the highest values of Fe and Zn, and the lowest value for phytic acid. Phytic acid:Fe and phytic acid:Zn ratios were also highly significantly reduced under low P stress conditions. Low N conditions caused significantly increased Zn levels. Despite this, the phytic acid:Fe and phytic acid:Zn ratios were relatively high under all conditions, indicating a low bioavailability of both Fe and Zn in these wheat cultivars.
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Biology, Agricultural Sciences & Agronomy; Conservation Agriculture; Durum Wheat; Faba-bean, Fungal diseases; Grain Quality
Online: 23 July 2018 (13:39:38 CEST)
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Conservation agriculture (CA) could be very effective for agricultural sustainability under Mediterranean environments, where farmers rely on short rotation based on durum wheat. In this work we investigated the effect of different combination of tillage treatments and crop sequence (conventional tillage and wheat monocropping, CT-WW; conventional tillage, and wheat following faba-bean, CT-WF; zero tillage and wheat monocropping, ZT-WW; zero tillage and wheat following faba-bean, ZT-WF) on yield, grain quality traits as well as on diseases incidence and severity in durum wheat (var. Saragolla). The results of a two-years of data of a long-term experiment (7-year experiment; split-plot design) are discussed. The CA approach (ZT+WF), which induced always the highest grain yields (6.1 t ha-1 and 3.3 t ha-1 in 2016 and 2017) thanks to an increased number of spikes m-2 (296 vs 269 and 303 vs 287 spikes m-2 in 2016 and 2017, respectively) as well as to a more pronounced ear length, demonstrated significant positive influences in terms of grain quality. It promoted grain protein accumulation (12.1% for ZT+WF versus 11.4% for ZT+WW and 12.4% for ZT+WF versus 10.6% for ZT+WW in 2016 and 2017), improved gluten quality (in terms of SDS sedimentation test) and colour of the grain. The abundance of crop residues determined a higher incidence and severity of Zymoseptoria tritici leaf symptoms under CA system; nevertheless the late appearance of infection was the main reason of not affecting yield and quality traits. The presence of faba-bean (WF) in the rotation significantly reduced leaf symptoms of Z. tritici.
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Biology, Agricultural Sciences & Agronomy; American grapevine rootstocks; vertical garden; offshoot growth; footprint
Online: 16 July 2018 (07:23:00 CEST)
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In this study, grapevine was used as the research material. This plant which epitomizes the opinion that vertical gardens can have a positive influence on human psychology with their beautiful view, e.g., the hanging gardens of Babylon about 2500 years ago. The study in question was conducted in 2016 at Bingol University, Faculty of Agriculture, the Department of Garden Plants research and application area. The offshoot growth was measured in a fertilizer experiment that formed the control, first application (200 g/100 L water, leaf) and second application (100 g/100 L water + 20% leaf + root). Moreover, the plant’s footprint in the vertical area was determined. The average offshoot growth of 1103 P American grapevine rootstock in the first and second applications was measured as 61.5 cm and 39.5 cm respectively, and it was 43.0 cm and 51.0 for C American grapevine rootstock. The average growth of 1103 P and 1616 C American grapevine in the control group was determined as 30.6 cm and 32.1 cm. The average growth of both American grapevine rootstocks used in the experiment was determined to be higher for the first and second applications than the controls.
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Biology, Agricultural Sciences & Agronomy; ALS-inhibitors; horseweed; multiple-resistance; alternative chemical control
Online: 11 July 2018 (13:56:59 CEST)
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Conyza canadensis is a species invading large agricultural areas throughout the world, mainly to its ability to evolve herbicide resistance. Specifically, in Hungary, extensive areas have been infested by this species due to the difficulty in controlling it with glyphosate. To corroborate this fact as resistance and not as an incorrect herbicide application, eight suspicious glyphosate-resistant C. canadensis populations from different Hungarian regions were studied. In dose-response assays with glyphosate, the LD50 and GR50 values indicated that populations 1 to 5 were resistant to this herbicide (H-5 population the most resistant). Besides, the shikimic acid accumulation tests corroborated the results observed in the dose-response assays. 11 alternative herbicides from 6 different mode of action (MOA) were applied at field doses as control alternatives on populations H-5 and H-6 (both in the same regions). The H-5 population showed an unexpected resistance to flazasulfuron (ALS-inhibitor). The ALS enzyme activity studies indicated that the I50 for H-5 was 63.3 fold higher compared to its correspondent susceptible population (H-6). Therefore, the H-5 population exhibited multiple-resistance to flazasulfuron and glyphosate, being the first case reported in Europe for this two MOA. For that reason, the other herbicides with different MOA have to be tested here.
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Biology, Agricultural Sciences & Agronomy; parthenium weed, soil seedbank, soil depth, seed extraction, sieve shaker
Online: 3 July 2018 (18:02:13 CEST)
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Weed seedbank is an indication of future weed infestation potential of the species and is essential for making strategic planning for its sustainable management. Parthenium weed (Parthenium hysterophorus L.) is an invasive alien species threatening the biodiversity and the environment in Malaysia. A study was, therefore, conducted to estimate the soil seedbank of the weed at four soil depths of four villages of Kuala Muda, Kedah. The aim was to indicate the critical s of parthenium weed seedbank in Malaysia. Soil samples were collected from the sites using a soil core. The seeds were extracted from the soil samples with sieve shaker at the Universiti Malaysia Kelantan laboratory, Jeli Campus. The study indicates that the weed seedbank is in critical level at the area. The highest number of weed seeds (6915/m2) was found in Kg. Kongsi 6, followed by Kg. Sungai Tok Rawang (4481 seeds/m2). The top layer of soil, 0-5 cm, contained the maximum number of weed seeds (4878 seeds/m2) and a significant number of seeds (316 seeds/m2) were noticed at 10-15 cm soil depth. The study suggests the Malaysian government to take immediate action to control parthenium weed seedbank of the sites.
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Biology, Agricultural Sciences & Agronomy; Plant stress, abiotic stress, biotic stress, metabolomics, phytometabolomics, sensomics, phytohormonics, LC-MS/MS, NMR, targeted metabolomics, untargeted metabolomics, functional food.
Online: 3 July 2018 (16:18:19 CEST)
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The breeding of stress-tolerant cultivated plants that would allow for a reduction in harvest losses and undesirable decrease in quality attributes requires a new quality of knowledge on molecular markers associated with relevant agronomic traits, on quantitative metabolic responses of plants on stress challenges, and on the mechanisms controlling the biosynthesis of these molecules. By combining metabolomics with genomics, transcriptomics and proteomics datasets a more comprehensive knowledge of the composition of crop plants used for food or animal feed is possible. In order to optimize crop trait developments, to enhance crop yields and quality, as well as to guarantee nutritional and health factors, that provides the possibility to create functional food or feedstuffs, the knowledge about the plants’ metabolome is crucial. Next to classical metabolomics studies, this review focusses on several metabolomics based working techniques, such as sensomics, lipidomics, hormonomics and phytometabolomics, which were used to characterize metabolome alterations during abiotic and biotic stress, to find resistant food crops with a preferred quality or at least to produce functional food crops are highlighted.
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Biology, Agricultural Sciences & Agronomy; DNA fingerprinting; SSR-markers; gel electrophoresis; hybrid testing and pigeonpea
Online: 25 June 2018 (11:57:54 CEST)
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Pigeonpea (Cajanus cajan (L.) of Fabaceae family belongs to genus Cajanus usually grown in semi-arid tropics of Asia and Oceania, Africa and America. This crop has been a best source for improving food and soil quality amongst farmers. However, its seed have been always questioned for purity. This problem is managed by using polymorphic SSR markers. In present study, a DNA fingerprints generated by seven SSR markers and hybrid testing is performed on Pigeonpea test samples along with parental lines. The seed samples of pigeonpea were germinated in laboratory and three week old leaves samples were used for DNA isolation by CTAB method. A total of 9 alleles were observed in three test samples using three primers out of seven primers. The screening of the allelic data associated with the three cultivated varieties, revealed markers (CcM0246) displayed unique allelic profiles for one variety. Yet, the genetic fingerprinting data is not well resolved to potentially distinguished two bands of hybrid that are merely of 4–8 bp to confirm hybrid testing of seed. Hybrid testing of may be confirmed including more SSR primers prepared from genomic DNA of pigeonpea.
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Biology, Agricultural Sciences & Agronomy; aflatoxins; Mozambique; impact; health; economy; regulation
Online: 20 June 2018 (11:50:00 CEST)
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Aflatoxins are a known cause of primary liver cancer in Mozambique since pre-independence epidemiological studies. However, their impact goes beyond the public health, affecting the country’s economy and raising legal concerns. As a developing country endemic for Aspergillus, the nation has been struggling to keep pace with external trade quality demands, delicate policy making, still dealing with the farmers’ limitations to control the contamination. The contamination shows variations over time, space and the different commodities. Considering the recommendations of the Codex Alimentarius, the major crops will be highly implicated unless there is major intervention from the authorities to control the toxins.
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Biology, Agricultural Sciences & Agronomy; biochar; compost; nutrient retention; highly weathered soil; Chinese cabbage
Online: 14 June 2018 (17:46:36 CEST)
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Highly weathered soils in the tropics are low in fertility, negatively affecting plant growth. The potential of biochar for improving soil nutrient retention is reportedly promising, triggering this study to assess the nutrient retention capacities of two biochars when applied at 2% in combination with two composts also applied at 2% to an Ultisol (Ustic Kanhaplohumult, Leilehua series) and an Oxisol (Rhodic haplustox, Wahiawa series) of Hawai’i. Chinese cabbage (Brassica rapa cv. Bonsai) was used as the test plant in two greenhouse plantings, which had a factorial completely randomized design with three replicates per treatment. The results indicated that the combined additions of biochar and compost significantly increased the pH, EC, P and K of the soils; improved Ca, Mg and Fe uptake; and increased shoot and total cabbage fresh and dry matter. Exchangeable aluminum in the Ultisol was decreased from 2.5 cmol+/kg to virtually zero. Extractable Mn and Fe in the high Mn-Oxisol were decreased by 55 and 42%, respectively. Chinese cabbage growth in the Ultisol amended with the lac tree (Schleichera oleosa) wood biochar and vermicompost was almost twice over lime at 2 cmol+/kg. Essential nutrients in the plant tissues, with the exception of N and K, were sufficient for the cabbage growth, suggesting increases in nutrients and reduced soil acidity by the additions of biochar combined with compost were the probable cause.
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Biology, Agricultural Sciences & Agronomy; Site-specific K management, Soil K supply, Maize yield response to K, Maize Crop Manager, Nutrient Expert for Maize.
Online: 13 June 2018 (18:05:00 CEST)
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Increased nutrient withdrawal by rapidly expanding intensive cropping systems, in combination with imbalanced fertilization, is leading to potassium (K) depletion from agricultural soils in Asia. There is an urgent need to better understand the soil K-supplying capacity and K-use efficiency of crops to address this issue. Maize is increasingly being grown in rice-based systems in South Asia, particularly in Bangladesh and North East India. The high nutrient extraction, especially K, however, causes concerns for the sustainability of maize production systems in the region. The present study was designed to estimate, through a plant-based method, the magnitude, and variation in K-supplying capacity of a range of soils from the maize-growing areas and the K-use efficiency of maize in Bangladesh. Eighteen diverse soils were collected from several upazillas (or sub-districts) under 11 agro-ecological zones to examine their K-supplying capacity from the soil reserves and from K fertilization (@ 100 mg K kg-1 soil) for successive seven maize crops grown up to V10-V12 in pots inside a net house. A validation field experiment was conducted with five levels of K (0, 40, 80, 120 and 160 kg ha-1) and two fertilizer recommendations based on “Nutrient Expert for Maize-NEM” and “Maize Crop Manager-MCM” decision support tools (DSSs) in 12 farmers’ fields in Rangpur, Rajshahi and Comilla districts in Bangladesh. Grain yield and yield attributes of maize responded significantly (P < 0.001) to K fertilizer, with grain yield increase from 18 to 79% over control in all locations. Total K uptake by plants not receiving K fertilizer, considered as potential K-supplying capacity of the soil in the pot experiment, followed the order: Modhukhali >Mithapukur >Rangpur Sadar >Dinajpur Sadar >Jhinaidah Sadar >Gangachara >Binerpota >Tarash >Gopalpur >Daudkandi >Paba >Modhupur >Nawabganj Sadar >Shibganj >Birganj >Godagari >Barura >Durgapur. Likewise in the validation field experiment, the K-supplying capacity of soils was 83.5, 60.5 and 57.2 kg ha-1 in Rangpur, Rajshahi, and Comilla, respectively. Further, the order of K-supplying capacity for three sites was similar to the results from pot study confirming the applicability of results to other soils and maize-growing areas in Bangladesh and similar soils and areas across South Asia. Based on the results from pot and field experiments, we conclude that the site-specific K management using the fertilizer DSSs can be the better and more efficient K management strategy for maize.
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Biology, Agricultural Sciences & Agronomy; abscission layer; artificial selection; crop domestication; dehiscence; legumes; seed dispersal
Online: 11 June 2018 (17:28:54 CEST)
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In wild habitats, fruit dehiscence is a critical strategy for seed dispersal; however, in cultivated crops it is one of the major sources of yield loss. Therefore, indehiscence of fruits, pods, etc., was likely to be one of the first traits strongly selected in crop domestication. Even with the historical selection against dehiscence in early domesticates, it is a trait still targeted in many breeding programs, particularly in minor or underutilized crops. Here, we review of this trait in pulse (grain legume) crops, which are of growing importance as a source of protein in human and livestock diets, and which have received less attention than cereal crops and the model plant Arabidopsis thaliana. We specifically focus on the i) history of indehiscence in domestication across legumes, ii) structures and the mechanisms involved in shattering, iii) the molecular pathways underlying this important trait, iv) an overview of the extent of crop losses due to shattering, and the effects of environmental factors on shattering, and, v) efforts to reduce shattering in crops. While our focus is mainly pulse crops, we also included comparisons to crucifers and cereals because there is extensive research on shattering in these taxa.
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Biology, Agricultural Sciences & Agronomy; aflatoxin, history, research, Mozambique
Online: 7 June 2018 (12:23:53 CEST)
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In Mozambique, the aflatoxin research started in 1960’s and has been carried through apparently unrelated efforts according to opportunities. However, there was a major trend divided in early epidemiological studies and recent agricultural research. Early investigators found strong correlation between aflatoxin contamination and primary liver cancer. Since then, there have been efforts to analyze the extent of contamination, especially in groundnuts and maize. More recent investigation and intervention aimed mostly to reduce the level of contamination enough to allow such commodities to gain acceptance in the international market. The current status of knowledge is still marginal but the increasing involvement of local authorities, academia and international organizations seems promising.
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Biology, Agricultural Sciences & Agronomy; Fusarium graminearum, mycelial growth, RGB, gray scale.
Online: 28 May 2018 (18:31:22 CEST)
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Size-based fungal growth studies have limitations. For example, the growth in size stops in closed systems once it reaches the borders and poorly describes the metabolic status, especially in the stationary phase. This might lead mycotoxin studies to unrealistic results. Color change could be a viable alternative as pigments are results of the mold’s metabolic activity. This study aimed to verify the possibility of using gray values and the RGB system to analyze the growth of Fusarium graminearum. It consisted color and area measurement using the ImageJ software for specimens grown in yeast extract agar (YEA). The results suggest the usability of color and gray values as reliable tools to analyze the growth of F. graminearum.
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Biology, Agricultural Sciences & Agronomy; aflatoxins; Mozambique; etiology; epidemiology; control
Online: 28 May 2018 (10:40:13 CEST)
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Mozambique is endemic to aflatoxigenic Aspergillus but the country has to heavily rely on foreign research to deduct what is happening locally. There is some information produced by local scholars and institutions but it needs to be “tied” together. This review briefly synthetizes the country’s major findings in relation to the toxin’s etiology, epidemiology, detection and control, discussing and meta-analyzing them as far as they allow. The causes and foods affected are the same as in most tropical countries, the toxin is widespread and the level of exposure is high. Regarding the control, it is still marginal but some institutions have driven efforts in this direction. Learning from other countries is still the best approach to take, as the solutions are probably the same for most places.
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Biology, Agricultural Sciences & Agronomy; GH3 family; sequencing plants; potato; jasmonic acids; tissues; biotic
Online: 17 May 2018 (14:01:00 CEST)
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Glycoside Hydrolase 3 (GH3) is a phytohormone-responsive family of genes that has been found in many plant species. It is implicated in the biological activity of indolacetic (IAA) and jasmonic acids (JA), and also affects plant growth and developmental processes and some stresses. In this study, GH3 genes were identified in 48 plants, which belong to algae, moss, fern, gymnosperm and angiosperm. No GH3 representative gene has been found in algae, and our research identified 4 genes in mosses, 19 in ferns, 7 in gymnosperms, and numerous in Angiosperms. The results showed that GH3 genes mainly occur in seed plants. Phylogenetic analysis of all GH3 genes showed three separate clades. Group I was related to JA adenylation, group II was related to IAA adenylation, and group III was separated from group II but the function was not clear. The structure of GH3 protein indicated highly conserved sequence in the plant kingdom. The analysis of JA-adenylation related to gene expression of GH3 in potato (Solanum tuberosum) showed that StGH3.12 highly responded to Methyl Jasmonate (MeJA) treatment. Expression levels of StGH3.1, StGH3.11, and StGH3.12 were high in flower and StGH3.11 expression was also high in stolon. Our research revealed the evolution of the GH3 family, which is useful for studying the precise function about JA-adenylation GH3 genes in S. tuberosum under development and biotic stresses.
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Biology, Agricultural Sciences & Agronomy; Vigna radiata (L.) Wilczek; G x E interaction; Improvement; Model; Yield; Yield traits
Online: 11 May 2018 (17:46:43 CEST)
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Mungbean [Vigna radiata (L.) Wilczek] in Australia has been transformed from a niche opportunistic crop into a major summer cropping option for dryland growers in the summer-dominant rainfall regions of Queensland and New South Wales. This transformation followed stepwise genetic improvements in both grain yields and disease resistance. For example, more recent cultivars such as ‘Crystal’, ‘Satin II’ and ‘Jade-AU‘ have provided up to a 20% yield advantage over initial introductions. Improved agronomic management to enable mechanised management and cultivation in narrow (<50 cm) rows has further promised to increase yields. Nevertheless, average yields achieved by growers for their mungbean crops remain less than 1 t/ha, and are much more variable than other broad acre crops. Further increases in yield and crop resilience in mungbean are vital. In this review, opportunities to improve mungbean have been analysed at four key levels including phenology, leaf area development, dry matter accumulation and its partitioning into grain yield. Improving the prediction of phenology in mungbean may provide further scope for genetic improvements that better match crop duration to the characteristics of target environments. There is also scope to improve grain yields by increasing dry matter production through the development of more efficient leaf canopies. This may introduce additional production risks as dry matter production depends on the amount of available water, which varies considerably within and across growing regions in Australia. Improving crop yields by exploiting photo-thermal sensitivities to increase dry matter is likely a less risky strategy for these variable environments. Improved characterisation of growing environments using modelling approaches could also better define and identify the risks of major abiotic constraints. This would assist in optimising breeding and management strategies to increase grain yield and crop resilience in mungbean for the benefit of growers and industry.
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Biology, Agricultural Sciences & Agronomy; agrobiodiversity; vegetables; plant genetic resources; Italy; safeguarding; landraces
Online: 4 May 2018 (11:34:09 CEST)
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The study attempts, above all, to provide a summary, with a strictly scientific basis, about the strategies of conservation of autochthonous agrobiodiversity followed in Italy. A special focus is dedicated on vegetables and, therefore, could represent a contribution to improve the national strategy for the safeguarding of its agrobiodiversity in general. The paper offers also an outlook on the most critical factors of the ex situ conservation and some actions which need to be taken. Some examples of ‘novel’ recovered neglected crops are also given. Finally a case study is proposed: ‘Mugnolicchio’, a neglected race of Brassica oleracea L., cultivated in Altamura (Ba) in southern Italy. ‘Mugnolicchio’ might be considered as an early step in the evolution of broccoli (B. oleracea L. var. italica Plenck) like ‘Mugnoli’ another neglected race described from Salento (Apulia).
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Biology, Agricultural Sciences & Agronomy; low fat; salt reduction; meat product; sensory; beef
Online: 3 May 2018 (11:46:55 CEST)
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The consumer’s acceptability of hamburgers elaborated with the flank of culling cows in which the content of salt or fat had been partially replaced was studied. A mixture of potassium chloride, potassium ferrocyanide and sodium ferrocyanide was used as substitutes for the salt. Oat flakes or a mixture of chia and flax seeds were used as substitutes for the fat. The hamburgers were tasted by 34 consumers. Consumers did not detect significant differences between the control and the rest of the formulations. Neither the gender nor the age of the consumers influenced the sensory appraisal. However, many comments regarding texture failures were recorded. Therefore, the substitution of salt and / or fat in the composition of hamburgers made with the flank of cows is a viable alternative for the commercialization of these pieces of low commercial value as long as the texture of the same is adjusted to resemble it to the control.
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Biology, Agricultural Sciences & Agronomy; conservation agriculture; soil greenhouse gas (GHG) fluxes; soil tillage
Online: 10 April 2018 (12:02:25 CEST)
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Conservation Agriculture (CA) alters soil properties and microbial processes compared to conventional agriculture. These changes can affect soil-atmosphere greenhouse gas (GHG) fluxes. In this overview, we summarized the results of global literature and the gaps in measuring and understanding of GHG fluxes in CA systems and conventional agriculture. Some studies compared soil carbon sequestration and soil respiration in conservation agriculture and no-tillage system with conventional agriculture and the results were not consistent in all experiments. Interactions between CA pillars and soil factors such as soil moisture, temperature, texture can determine the rate of respiration rate and soil-atmosphere CO2 fluxes. The majority of studies reported larger N2O emissions in no-tillage treatment compared with conventional tillage while some other studies reported no difference between no-tillage and conventional tillage systems. In the majority of CA studies, there is lack of required information which is necessary to understand the mechanisms and processes that affect soil GHG fluxes. Determining factors like climate, amount of plant residues, soil type, crop types included in crop rotation and cover crops and duration of the study are not considered. Static chamber method was used for measuring soil-atmosphere GHG fluxes in the majority of studies. Spatial and temporal changes in GHG flux rates are high and missing part of highly episodic events by using static chamber method may result over- or under-estimation in flux balance calculation. Applying standard techniques for measuring continuous fluxes can help to calculating accurate GHG balance.
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Saeed Karbin,
Hossein Ali Alikhani,
Pramod Sahu,
Bharat Mogare,
Bhaskar Mitra,
Sandeep Viswakarma,
Jitendra Singh,
RamKrishna Mahajan,
Sunil Malviya,
Pankaj Badole,
Naveen Patidar,
Amir Kassam
Biology, Agricultural Sciences & Agronomy; conservation agriculture; greenhouse gases; soil health
Online: 10 April 2018 (08:30:15 CEST)
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Conservation Agriculture (CA) is capable of improving soil health and ecosystem functions. Soil carbon sequestration is one of the ecosystem processes that is of importance in sustainable land management involving reduction in greenhouse gas emissions and adaptation to climate change. In this study, we wanted to determine, during the first year of the process of establishing a CA cropping system in rain-fed areas in Madhya Pradesh state of India, which soil health indicators show measurable signs of improvement. Four field trials were selected, each comprising two neighboring plots. One plot (15×15 m) was managed conventionally under farmer practice and was tilled before sowing seeds, and in the adjacent plot Conservation Agriculture practices were applied. No mineral fertilizers or pesticides were applied in both treatments. Soil health indicators of soil aggregate stability, soil-atmosphere CO2 fluxes, water infiltration, soil moisture, potentially mineralizable nitrogen, soil organic content and bulk density were measured. Results demonstrate that soil CO2 emissions in CA soils decreased and soil aggregates stability improved in the first year. Generally, in CA soils, there were measurable improvements in all soil health indicators but only some of them were statistically significant.
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Biology, Agricultural Sciences & Agronomy; wild chili pepper; domestication; seed germination; capsaicinoids content; halopriming; gibberellic acid
Online: 26 March 2018 (10:51:45 CEST)
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The effects of different priming techniques were evaluated to improve the dormancy and germination of wild seeds of “Piquín” chili pepper. Three experiments were designed for pre-sowing treatment of seeds: a) chemical seeds digestion; b) halopriming (with K+ or NH4+ of NO3-, SO42- or Cl-) at different priming times (24, 48 or 72 h) and osmotic potential (-5, -10 or -15 atm) and c) previously selected halopriming (KNO3 and NH4NO3) + Gibberellic acid (GA3, at 100 or 200 ppm) were tested. Digestion treatments did show a negative effect on seed germination. Recommended values of osmotic potential (Ψs), to improve Piquín chili seed germination, must be between -10 and -15 atm (-1.0 and -1.5 MPa) and the priming time must be between 48 and 72 hours. Priming techniques can considerably reduce Capsaicinoids content on seeds, improve dormancy, seed germination performance, and increase the rate and uniformity of seedling establishment. KNO3 and secondly GA3 treatments may improve rapid and uniform germination and seedling emergence. The results provide basic information to develop guidelines for commercial establishment of Piquín pepper crops.
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Biology, Agricultural Sciences & Agronomy; abiotic stress; antioxidant defense; enzyme regulations; oxidative stress; plant nutrients; reactive oxygen species; soil fertility
Online: 24 January 2018 (08:01:05 CET)
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Among the plant nutrients potassium (K) is one of the vital elements required for plant growth and physiology. Potassium is not only a constituent of plant structure but also plays regulatory function in several biochemical processes related to protein synthesis, carbohydrate metabolism, enzyme activation. There are several physiological processes like stomatal regulation and photosynthesis are dependent on K. In the recent decades K was found to provide abiotic stress tolerance. Under salt stress, K helps in maintaining ion homeostasis and regulation of osmotic balance. Under drought stress condition K regulates the stomatal opening and makes the plants adaptive to water deficit. Many reports provided the notion that K enhances the antioxidant defense in plants and therefore, protects the plants from oxidative stress under various environmental adversities. Also, it provides some cellular signaling alone or in association with other signaling molecules and phytohormones. Although a considerable progress in understanding K-induced abiotic stress tolerance in plants has been achieved the exact molecular mechanisms of such protections are still under research. In this review, we summarized the recent literature on the biological functions of K, its uptake, and translocation and its role in plant abiotic stress tolerance.
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Biology, Agricultural Sciences & Agronomy; data needs; empirical models; integrated models; process-based models; review
Online: 15 December 2017 (08:13:40 CET)
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There is increasing evidence that the impact of climate change on the productivity of grasslands will at least partly depend on their biodiversity. A high level of biodiversity may confer stability to grassland ecosystems against environmental change, but there are also direct effects of biodiversity on the quantity and quality of grassland productivity. To explain the manifold interactions, and to predict future climatic responses, models may be used. However, models designed for studying the interaction between biodiversity and productivity tend to be structurally different from models for studying the effects of climatic impacts. Here we review the literature on the impacts of climate change on biodiversity and productivity of grasslands. We first discuss the availability of data for model development. Then we analyse strengths and weaknesses of three types of model: ecological, process-based and integrated. We discuss the merits of this model diversity and the scope for merging different model types.
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Biology, Agricultural Sciences & Agronomy; carbohydrate starvation; non-structural carbohydrate; photosynthesis; photosynthesis inhibition; respiration; relative growth rate; structure; diurnal variation
Online: 30 November 2017 (09:48:58 CET)
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Predicting the growth response of seedlings from the environmental responses of photosynthesis and metabolism may be improved by considering the dynamics of non-structural carbohydrate, NSC, over a diurnal cycle. Attenuation of growth metabolism when NSC content is low could explain why some NSC is conserved through the night. A dynamic model, incorporating diurnal variation in NSC, was developed to simulate growth of seedlings hour-by-hour. I compared predictions of this model to published growth and NSC data for seedlings that varied according to temperature, light, day length, or CO2. Prolonged-darkness experiments showed a temperature dependent upper limit on the respiration capacity. Respiration was attenuated as NSC was depleted. Furthermore, when NSC was high at dawn, inhibition of photosynthesis could attenuate the accumulation of NSC under low temperature, or high light, or high CO2. These concepts were used to simulate plant metabolism and growth rates and diurnal variation of NSC in tomato seedlings under two light levels and various temperatures. Comparison of other results using the same model parameters showed the dynamic model could predict results for starch and starch-less plants, and when growth was affected by CO2 enrichment and day length.
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Biology, Agricultural Sciences & Agronomy; carbon response curve; light response curve; photosynthesis; pigment determination; sago palm.
Online: 20 November 2017 (08:36:39 CET)
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Photosynthetic activities of the sago palm (Metroxylon sagu Rottb.) were studied to find out its sensitivity to changes in ambient air temperature. The minimum ambient air temperature designed for the experiment was 25–29⁰C, while the higher end was 29–33⁰C. Several photosynthetic parameters were studied to support our analysis in sago photosynthetic activity, including diurnal leaf gas exchange, assimilation rate vs. CO2 concentration, leaf greenness, leaf chlorophyll content, and photosynthetic rate vs. irradiance. We found that sago palm photosynthetic activity tends to be more sensitive to minimum than to maximum ambient air temperature. The plants exposed to higher air temperatures had dark green leaf color associated with higher rates of diurnal photosynthesis, chlorophyll content, and rubisco limited photosynthetic activity. They also exhibited higher trend in optimum irradiance absorption level. Consequently, maximum light energy dissipation occurred at higher temperatures.
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Biology, Agricultural Sciences & Agronomy; adoption; land-use; degradation; ethnobotany; networking; agroforestry; dry semi-deciduous
Online: 7 November 2017 (05:06:23 CET)
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Bamboo agroforestry is currently being promoted as a viable land use option to reduce dependence on natural forest for wood fuels in Ghana. To align the design and introduction of bamboo agroforestry in conformity with farmers’ needs, perceptions, skills and local cultural practices, information on its acceptability and adoption potential among farmers is necessary. It is therefore the objective of this study to (1) describe bamboo ethnobotany and (2) assess socioeconomic factors that affect the acceptability and adoption of bamboo and its integration into farming practices. Accordingly, information has been collected from 200 farmers in the dry semi-deciduous forest zone of Ghana. The study identified the socioeconomic risks and uncertainties as well as biophysical factors that are likely to influence the potential adoption of bamboo agroforestry in the study region. Gender, age, farmers’ known uses of bamboo, the practice of leaving trees on farmlands, farmers’ networking and access to extension services, land availability and ownership by farmers were identified as suitable predictor variables for the adoption of bamboo agroforestry. It is envisaged that bamboo agroforestry is a good bet in the DSFZ though there is the need to explore domestic energy (fuelwood) provision and substitution potential in order to have a broader picture of the technology.
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Biology, Agricultural Sciences & Agronomy; Expired Plant Variety Protection (ex-PVP); maize; nitrogen stress; Nitrogen Use Efficiency (NUE); U.S. Corn Belt Germplasm
Online: 4 November 2017 (08:39:11 CET)
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Nitrogen use efficiency (NUE) in maize (Zea mays L.) is an important trait to maximize yield with minimal input of nitrogen (N) fertilizer. Expired Plant Variety Protection (ex-PVP) Act-certified germplasm may be an important genetic resource for public breeding sectors. The objectives of this research were to evaluate the genetic variation of N-use traits and to characterize maize ex-PVP inbreds adapted to the U.S. Corn Belt for NUE performance. Eighty-nine ex-PVP inbreds [36 stiff stalk synthetic (SSS), and 53 non-stiff stalk synthetic (NSSS)] were genotyped using 26,769 single-nucleotide polymorphisms, then 263 single-cross maize hybrids derived from these inbreds were grown in eight environments from 2011 to 2015 at two N fertilizer rates (0 and 252 kg N ha−1) and three replications. Genetic utilization and the yield response to N fertilizer were stable across environments and were highly correlated with yield under low and high N conditions, respectively. Cluster analysis identified inbreds with desirable NUE performance. However, only one inbred (PHK56) was ranked in the top 10% for yield under both N-stress and high N conditions. Broad-sense heritability across 12 different N-use traits ranged from 0.11 to 0.77, but was not associated with breeding value accuracy. Nitrogen-stress tolerance was negatively correlated with the yield increase from N fertilizer.
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Biology, Agricultural Sciences & Agronomy; Fusarium oxysporum f. sp. Niveum; p-isopropyl benzoic acid; Biofungicide; Disease management
Online: 30 October 2017 (16:46:36 CET)
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Watermelon fusarium wilt caused by Fusarium oxysporum f.sp. niveum (FON) is a destructive soil-borne disease throughout the world leading to serious economic losses and limit watermelon production. Cuminic acid, extracted from the seed of Cuminum cyminum L., belongs to benzoic acid analogues. In this study, the median effective concentration (EC50) values for cuminic acid in inhibiting mycelial growth of FON was 22.53μg/mL. After treatment with cuminic acid, mycelial morphology was seriously influenced; cell membrane permeability and glycerol content were increased markedly, but pigment and mycotoxin (mainly fusaric acid) were significantly decreased. Synthesis genes of bikaverin and fusaric acid both were down regulated compared with the control confirmed by quantitative RT-PCR. In greenhouse experiments, cuminic acid at all concentrations displayed significant bioactivities against FON. Importantly, significant enhancement of activities of SOD, POD, CAT and decrease of MDA content after cuminic acid treatment in watermelon leaves were observed in vivo. These indicated that cuminic acid not only showed high antifungal activity, but also could enhance the self-defense system of the host plant. Above all, cuminic acid showed the potential as a biofungicide to control FON.
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Biology, Agricultural Sciences & Agronomy; geometric morphometrics; morphology; paramere; Macrolophus pygmaeus; Macrolophus melanotoma; Macrolophus costalis
Online: 12 October 2017 (05:31:43 CEST)
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Within the genus Macrolophus (Heteroptera: Miridae), the species M. costalis (Fieber), M. melanotoma (Costa) and M. pygmaeus (Rambur) are present in the Mediterranean region on a wide variety of plant species. While M. costalis can easily be separated from the other two by the black tip at the scutellum, M. pygmaeus and M. melanotoma are cryptic species, extremely similar to one another in external traits, which have resulted in misidentifications. M. pygmaeus is an efficient biological control agent, both in greenhouse and field crops. The misidentification of these cryptic species could limit the effectiveness of biological control programs. Although morphology of the left paramere of the male genitalia has been used as a character for identification of these two cryptic species, there is controversy on the reliability of this character as a taxonomic tool for these species. Using geometric morphometric techniques, which are a powerful approach in detecting slight shape variations, the left parameres from these three Macrolophus species were compared. The paramere of M. costalis was larger and had a different shape than that of M. melanotoma and M. pygmaeus; however, no differences in size or shape were found between the left paramere of M. melanotoma and that of M. pygmaeus. Therefore, our results confirm that this character is too similar and it cannot be used to discriminate between these two cryptic species.
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Biology, Agricultural Sciences & Agronomy; wastewater irrigation; soil characteristics; agriculture; pollution; China
Online: 9 October 2017 (12:09:42 CEST)
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Fresh water is valuable nonrenewable resource and plays an important role of maintaining economic and social development. Condisering its large population and consumption potential, water resources deficit will certainly impede basic industries sustainable development of China in the near future. Application of sewage irrigation, to some extent, was regarded as an alternative way to solve the problem of agricultural irrigation water shortage in some areas (such as North China). However, accompanied with extensive implementation of sewage irrigation, some problems on sewage irrigation in agriculture are gradually obvious, especially serious pollution and destruction for farmland. In this paper, the effects of sewage irrigation on soil physical (soil bulk density, soil resistance to penetration and field capacity), chemical (pH, soil organic matter, nitrogen, phosphrous, patassium, heavy metal and organic pollutants) and biological characteristics (soil microorganism and enzyme activities) of farmland in China were systematically reviewed on the base of the current utilization status of China’s farmland sewage irrigation and some feasible suggestions were put forward to the development prospect for the future. This review will be beneficial for promoting healthy development of sewage irrigation and providing theoretical support for reclamation and high efficiency of effluents in China.
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Biology, Agricultural Sciences & Agronomy; brassica; food odour preference; HIPVs; Plutella xylostella; trap crop
Online: 6 June 2017 (11:00:57 CEST)
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The diamondback moth (DBM), Plutella xylostella L. (Lepidoptera: Plutellidae) is very destructive crucifers specialized pest that has resulted in significant crop losses worldwide. The pest is well attracted to glucosinolate-containing crucifers such as; Barbarea vulgaris (Brassicaceae), and generally to other plants in the genus Barbarea. B. vulgaris on their part, build up resistance against DBM and other herbivorous insects using glucosinolates; that are plant secondary metabolites used in plant defense–contained only in plants of the order Brassicales. Aside glucosinolates, plants in this genus Barbarea (Brassicaceae) also contain saponins; which is toxic to insects and act as feeding deterrents for plant herbivores, most importantly, DBM, as it was found to prevent the survival of DBM larvae on the plant. Saponins are plant secondary metabolites have been established in higher concentrations in younger in contrast to older leaves within the same plant. Previous studies have found a relationship between ontogenetical changes in the host plant’s saponin content and attraction/resistance to P. xylostella. The younger leaves recorded higher concentrations of glucosinolates and saponins, which naturally attracts the plant herbivores. DBM was reported to have evolved mechanisms to avoid the toxicity of the former. The plant-herbivore had adapted glucosinolates for host plant recognition, feeding and oviposition stimulants. Despite the adaptation for oviposition by P. xylostella adults, larvae of the insect cannot survive on the same plant. An example is in some varieties of B. vulgaris. The triterpenoid saponins which act as feeding deterrents in larvae are responsible for this direct defense mechanism against P. xylostella. In the future, trials by plant breeders could aim at transferring this insect resistance to other crops. The previous trials had limited because of lack of knowledge on the biosynthetic pathways and regulatory networks of saponins. Herein, we discussed exclusively; saponins mediated plant defense mechanisms against the DBM.
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Biology, Agricultural Sciences & Agronomy; blunt snout bream (megalobrama amblycephala); glucose transporter 2; glycometabolism; starch
Online: 22 May 2017 (08:12:21 CEST)
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Facilitative glucose transporters (GLUT) are transmembrane transporter of proteins involved in glucose transport across the plasma membrane. To date, there is no information about glucose transporter 2 (GLUT2) in blunt snout bream (Megalobram aamblycephala). In this study, GLUT2 were cloned and characterized from blunt snout bream, and its-expression in response to diets with different carbohydrate levels (17.1%; 21.8%; 26.4%; 32.0%; 36.3% and 41.9% of dry matter). In this study, the full-length cDNA of GLUT2 was 2577 bp, including a 5’-untranslated region (UTR) of 73 bp, a 3’-UTR of 992 bp, and an open reading frame of 1512 bp, encoding a polypeptide of 503 amino acids with predicted molecular weight of 55.046 kDa and theoretical isoelectric point of 7.52. GLUT2 has twelve across the membrane area locating at 7-29; 71-93; 106-123; 133-155; 168-190; 195-217; 282-301; 316-338; 345-367; 377-399; 412-434; 438-460 aimo acids respectively. Conservative structure domains located at 12-477 aimo acids belonging to sugar porter family major facilitator superfamily (MFS) transporter. The blunt snout bream GLUT2 showed high identity to their orthologs in other fish species and mammals. Quantitative real-time (qRT)-PCR assays revealed that GLUT2 expression was high in the liver, intestine and kidney; highest in the liver. Compared with the control group (17.1%), high dietary carbohydrate levels (32.0%; 36.3% and 41.9%) resulted in high plasma glucose at 3h after feeding, but high plasma glucose were back to basal at 24h after feeding. Furthermore, high dietary carbohydrate levels significantly improved the glycolysis and inhibitied gluconeogenesis by augmentation of GK and PK expression, inhibition of PEPCK and G6P mRNA levels (P<0.05). However, GLUT2; GK; PK; PEPCK and G6P mRNA levels were back to basal.
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Shaoli Wang,
Zhaohui Chu,
Mingxing Ren,
Ru Jia,
Changbao Zhao,
Dan Fei,
Hao Su,
Xiaoqi Fan,
Xiaotian Zhang,
Yang Li,
Yingzi Wang,
Xinhua Ding
Biology, Agricultural Sciences & Agronomy; Solanum nigrum; anthocyanins purification; HPLC-MS/MS; antioxidant capacity; SnMYB
Online: 15 May 2017 (19:31:53 CEST)
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Solanum nigrum fruits have been conventionally available as a material of beverage due to its nutritional substances such as minerals, vitamins, amino acids, proteins, sugars, polyphenols and anthocyanins. Here has rarely reported on the characterizaton of the components and the regulatory mechanism of Anthocyanins in S. nigrum. In this study, we determined that the peel and flesh of S. nigrum fruits shared the similar HPLC profiles, but the different contents and total antioxidant activities for Anthocyanins. After an efficient purification method mainly including extraction with pH 1.0 distilled water and then desorption with pH 1.0 95% ethanol after a DM-130 resin adsorption step to obtain more pure anthocyanins extracts, the purity of anthocyanins extract from S. nigrum fruits reached to 56.1%. Moreover, eight anthocyanins from S. nigrum fruit were identified with HPLC-MS/MS for the first time. A typical R2R3-MYB transcription factor gene, SnMYB, was also cloned for the first time by RACE-PCR from S. nigrum. Moreover, the contents of anthocyanins was shown a good correlation (r = 0.93) with the expression levels of SnMYB during the fruits developmental stages. Most significantly, SnMYB successfully produced high anthocyanins contents (1.03 mg/g) when SnMYB was transiently expressed in tobacco leaves. Taken together, S. nigrum fruits are a promising resource for anthocyanins extraction and SnMYB is an activator that positively regulates anthocyanins biosynthesis in S. nigrum.
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Biology, Agricultural Sciences & Agronomy; acne vulgaris; antibiotic resistance; chitosan-phytochemical conjugates; synergistic antibacterial effect
Online: 13 April 2017 (13:19:33 CEST)
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The object of this study was to discover an alternative therapeutic agent with fewer side effects against acne vulgaris, which is one of the most common skin diseases. Acne vulgaris often associates with acne-related bacteria such as <i>Propionibacterium acnes</i>, <i>Staphylococcus epidermidis</i>, <i>Staphylococcus aureus</i> and <i>Pseudomonas aeruginosa</i>, some of which exhibit a resistant against commercial antibiotics used in the treatment of acne vulgaris (tetracycline, erythromycin, and lincomycin). In the current study, we evaluated <i>in vitro</i> antibacterial activity of chitosan-phytochemical conjugates against acne-related bacteria. Three of chitosan-phytochemical conjugates used in this study showed stronger antibacterial activity than that of chitosan (unmodified control). Chitosan-caffeic acid conjugate (CCA) exhibited the highest antibacterial activity against acne-related bacteria with minimum inhibitory concentration values of 8 μg/mL to 256 μg/mL. In addition, the MICs of antibiotics against antibiotic resistant <i>P. acnes</i> and <i>P. aeruginosa</i> strains were dramatically reduced in the combination with CCA, suggesting that CCA would restore the antibacterial activity of the antibiotics. The analysis of fractional inhibitory concentration indices clearly revealed a synergistic antibacterial effect between CCA and the antibiotics. Thus, the median ∑FIC values against the antibiotic resistant bacterial strains were ranged from 0.375 to 0.533 in the combination mode of CCA and antibiotics.
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Biology, Agricultural Sciences & Agronomy; Cicer arietimum; Indole Acetic Acid; Bacillus megaterium; Pseudomonas putida; Mesorhizobium ciceri
Online: 2 March 2017 (17:34:44 CET)
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Six bacterial strains with differing abilities to produce varying concentrations of Indole Acetic Acid were tested individually and in consortia for plant growth promoting and fitness related traits of Cicer arietinum. In all experiments the presence of the nitrogen fixer Mesorhizobium ciceri resulted in increased biomass production. In the absence of this strain, IAA Psedomonas putida and Bacillus megaterium hinder plant growth and fitness related traits. The application of mixes of the three strains always resulted in better plant performance when M. ciceri was present. Whereas P. putida has a noticeable plant growth-promoting effect B. megaterium resulted less effective. The low levels of IAA produced by the selected strains had a significantly greater positive effect on plant biomass accumulation, flower, pods and seed production as well as on total plant nitrogen and nitrogen concentration in seed than high IAA producer strains.
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Biology, Agricultural Sciences & Agronomy; Triticum aestivum; carbon dioxide; minerals; protein; starch; baking properties; crop quality; food security
Online: 31 January 2017 (12:49:41 CET)
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Elevated carbon dioxide (eCO2) stimulates wheat grain yield, but simultaneously reduces protein (N) concentration. Also other essential nutrients are subject to change. This study is a comprehensive synthesis of wheat experiments with eCO2, estimating effects on N, minerals (B, Ca, Cd, Fe, K, Mg, Mn, Na, P, S, Zn), and starch. Analysis was made by i) deriving response functions for the relative effect on element concentration in relation to CO2 concentration, ii) meta-analysis to test the magnitude and significance of observed effects, and iii) relating CO2 effects on minerals to effects on N and grain yield. Responses range from zero to strong negative effects of eCO2 on mineral concentration, with largest reductions for the nutritionally important elements N, Fe, S, Zn and Mg. Together with the positive but small and non-significant effect on starch concentration, the large variation in effects suggests that CO2-induced responses cannot be explained by a simple dilution model. To explain the observed pattern, uptake and transport mechanisms may have to be considered, along with the link of different elements to N uptake. Our study shows that eCO2 has a significant effect on wheat grain stoichiometry, with implications for human nutrition in a world of rising CO2.
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Biology, Agricultural Sciences & Agronomy; food valuation; food as commons; food as commodity; transition theory; narratives of transition; agency in transition; transformative agency; counter-hegemonic attitudes; gradual reformers
Online: 16 January 2017 (05:17:20 CET)
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The food system, the most important driver of planetary transformation, is in a deep crisis. Therefore, seeking a sustainable and socially-fair transition pathway becomes an issue of utmost priority for our own survival. The consideration of food as a commodity, a social construct that played a central role in driving this crisis, remains the uncontested narrative to lead the different transition pathways what seems rather contradictory. By exploring the normative values in the transition landscape, this paper seeks to understand how relevant is the hegemonic narrative of “food as commodity” and its alternative of “food as commons” to determine transition trajectories and food policy beliefs. Applying the Multi-level Perspective framework and developing the ill-studied “agency in transition”, this research enquired food-related professionals that belong to an online community of practice (N=95) on valuation of food dimensions and agency in food transitions to check whether the valuation of food is relevant to explain personal stances in transition. Results suggest the socially-constructed view of food as commodity is positively correlated to the gradual reforming attitude, whereas food as commons is positively correlated to the counter-hegemonic transformers regardless the self-defined position in the transition landscape (regime or niches). At personal level, there are multiple loci of resistance with counter-hegemonic attitudes in varied institutions of the regime and the innovative niches, many of them holding this discourse of food as commons. Conversely, alter-hegemonic attitudes are not positively correlated to this alternative discourse and they may inadvertently or purportedly reinforce the ‘‘neoliberal narrative’’. Food as commons, a different narrative whose rationale is explained in the paper, seems to be a relevant framework that could enrich the multiple transformative constituencies that challenge the industrial food system and therefore facilitate the convergence of movements that reject the commodification of food.
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Biology, Agricultural Sciences & Agronomy; alcohol; aroma; bioengineering; flavour; synthetic genomics; taste; wine; yeast
Online: 10 December 2016 (10:09:54 CET)
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A perfectly balanced wine can be said to create a symphony in the mouth. To achieve the sublime, both in wine and music, requires imagination and skilled orchestration of artistic craftmanship. For wine, inventiveness starts in the vineyard. Similar to a composer of music, the grapegrower produces grapes through a multitude of specifications to achieve a quality result. Different Vitis vinifera grape varieties allow the creation of wine of different genres. Akin to a conductor of music, the winemaker decides what genre to create and considers resources required to realise the grape’s potential. A primary consideration is the yeast: inoculate the grape juice or leave it ‘wild’; which specific or combined Saccharomyces strain(s) should be used; or proceed with a non-Saccharomyces species? Whilst the various Saccharomyces and non-Saccharomyces yeasts perform their role during fermentation, the performance is not over until the ‘fat lady’ (S. cerevisiae) has sung (i.e. the grape sugar has been fermented to specified dryness and alcoholic fermentation is complete). Is the wine harmonious or discordant? Will the consumer demand an encore and make a repeat purchase? Understanding consumer needs lets winemakers orchestrate different symphonies (i.e. wine styles) using single- or multi-species ferments. Some consumers will choose the sounds of a philharmonic orchestra comprising a great range of diverse instrumentalists (as is the case with wine created from spontaneous fermentation); some will prefer to listen to a smaller ensemble (analogous to wine produced by a selected group of non-Saccharomyces and Saccharomyces yeast); and others will favour the well-known and reliable superstar soprano (i.e. S. cerevisiae). But what if a digital music synthesiser ‒ such as a synthetic yeast ‒ becomes available that can produce any music genre with the purest of sounds by the touch of a few buttons? Will synthesisers spoil the character of the music and lead to the loss of the much-lauded romantic mystique? Or will music synthesisers support composers and conductors to create novel compositions and even higher quality performances that will thrill audiences? This article explores these and other relevant questions in the context of winemaking and the role that yeast and its genomics play in the betterment of wine quality.
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Biology, Agricultural Sciences & Agronomy; crop coefficient; evapotranspiration; salinity; wheat crop
Online: 17 November 2016 (11:55:59 CET)
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A field experiment was conducted for determination of crop coefficient (KC) and water stress coefficient (Ks) for wheat crop under different salinity levels, during 2015-16. Complete randomized block design of five treatments were considered, i.e., 0.51 dS/m (fresh water) as a control treatment and other four saline water treatments (4, 6, 8 and 10 dS/m), for S1, S2, S3 and S4 with three replications. The results revealed that the water consumed by plants during the different crop growth stages follows the order of FW>S1>S2>S3>S4 salinity levels. According to the obtained results, the calculated values of crop coefficients significantly differed from those suggested by FAO No.56 for the crops. The Ks values clearly differ from one stage to another because the salt stress causes both osmotic stress, due to a decrease in the soil water potential, and ionic stress which the average values of water stress coefficient (Ks) follows this order; FW(1.0)=S1(1.0)>S2(1.0)>S3(0.93)>S4(0.82). Overall, it was found the differences are attributed primarily to specific cultivar, the changes in local climatic conditions and seasonal differences in crop growth patterns. Thus, further studies are essential to determine the crop coefficient values under different variables, to make the best management practice (BMP) in agriculture.
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Biology, Agricultural Sciences & Agronomy; Verticillium dahliae; VdAAC; RNAi; growth; virulence
Online: 2 November 2016 (17:27:40 CET)
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Verticillium dahliae invades the roots of host plants and causes vascular wilt, which seriously diminishes the yield of cotton and other important crops. The protein AAC (ADP, ATP carrier) is responsible for transferring ATP from the mitochondria into the cytoplasm. When V. dahliae protoplasts were transformed with short interfering RNAs (siRNAs) targeting the VdAAC gene, fungal growth and sporulation were significantly inhibited. To further confirm a role for VdAAC in fungal development, we generated knockout mutants (ΔVdACC), which were hypersensitive to stresses such as UV light and high concentrations of NaCl or sorbitol. Compared with wild-type V. dahliae (Vd wt), ΔVdAAC was impaired in germination and virulence; these impairments were rescued in the complementary strains (ΔVdAAC-C). Moreover, when an RNAi construct of VdAAC under the control of the 35S promoter was used to transform Nicotiana benthamiana, the expression of VdAAC was downregulated in the transgenic seedlings, and they had elevated resistance against V. dahliae. The results of this study suggest that VdAAC contributes to fungal development, virulence and response to stresses and is a promising candidate gene to control V. dahliae. In addition, RNAi is a highly efficient way to silence fungal genes and provides a novel strategy to improve disease resistance in plants.
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Biology, Agricultural Sciences & Agronomy; intra row spacing; intercropping; land equivalent ratio; sorghum (Teshale); groundnut (Fetene)
Online: 20 October 2016 (10:45:36 CEST)
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In eastern part of Ethiopia groundnut is very commonly intercropped with sorghum. Even though intercropping of sorghum with groundnut is practiced in the eastern part of Ethiopia the population density at what ratio should not be known. Therefore determining the population ratio is found to be crucial to draw management options. The study was conducted at two locations at Fadis (on station) and Babile (sub- station). Sorghum variety (Teshale) and groundnut (Fetene) were used as planting materials. All agronomic data were collected and analyzed by using GenStat software. Significant different were obtained among the treatments. The research result showed that, there were significance difference for both sorghum and ground nut yield per hectare in the years (2014 and 2015) among treatments. The result over time(in 2014 and 2015) at Fadis and Erer showed that the highest sorghum and groundnut yield per hectare were obtained/harvested from the intra row spacing of 25cmx20cm and 30cmx20cm intercropping sorghum with ground nut system with (1.27 and 1.31) respectively. The highest LER (1.31) and highest GMV (10218.00 ETBr/ha) were obtained from the intercropping of 30cmx20cm (Sorghum & groundnut). Clearly showed that, with intercropping of sorghum and Groundnut, it is possible to produce additional yield of sorghum without significant reduction in groundnut yield. As a result of this, the intra spacing of the main crop (sorghum) 25cm and 30cm and for the subsidiary crop (groundnut) 20cm was recommended for further production in the study areas of eastern Harerghe zone and similar agro-ecologies.
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Biology, Agricultural Sciences & Agronomy; plant extracts; antifungal activity; fungal pathogens
Online: 13 October 2016 (13:50:21 CEST)
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Abstract Plant fungal pathogens are frequently found as one of limiting factors for crop production. More than 10,000 species of fungi can cause disease in plants. To control the diseases, many farmers are still rely on the use of chemical fungicides, however most synthetic fungicides can cause acute toxicity, and some cause chronic toxicity as well. Thus, an appropriate technological improvement towards a more effective use of natural resources is required in agriculture to develop environmentally friendly sustainable farming system. This paper highlights the potential of extracts of tropical plants as antifungal agent to control plant fungal diseases. Information and data presented in this paper are mainly derived from selected and related references that previously published in the scientific journals. Many higher plants of tropical origin with fungicidal activities and their potential for fungal disease control of agricultural crops have been studied, however most of the studies have been done under in vitro condition. Some plant extracts showed strong antifungal activities on in vitro as well as in vivo tests, but some plant extracts showed significant antifungal activities on in vitro test, but did not obvious on in vivo tests. A great variation in antifungal activities were shown by plants extracts of different species and plant parts, in one hand, and on the other hand, variation was also observed on the responses of different fungal species to the same plant extract. Since the purpose of the use of plant extract is to control plant fungal diseases, the field trial is needed to ensure the stability of efficacy of certain plant extract. In addition, isolation and identification of active substances in the extracts is needed to assess possible mode of action and side effect of their use.
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Biology, Agricultural Sciences & Agronomy; MODIS; yield; phenology; LAD; logistic function
Online: 13 October 2016 (06:40:10 CEST)
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A simple approach was developed to predict corn yields using the MoDerate Resolution Imaging Spectroradiometer (MODIS) data product from two geographically separate major corn crop production regions: Illinois, USA and Heilongjiang, China. The MOD09A1 data product, which are 8-day interval surface reflectance data, were obtained from day of the year (DOY) 89 to 337 to calculate the leaf area index (LAI). The sum of the LAI from early in the season to a given date in the season [end of DOY (EOD)] was well fitted to a logistic function and represented seasonal changes in leaf area duration (LAD). A simple phenology model was derived to estimate the dates of emergence and maturity using the logistic function parameters b1 and b2, which represented the rate of increase in LAI and the date of maximum LAI, respectively. The phenology model predicted emergence and maturity dates fairly well, with root mean square error (RMSE) values of 6.3 and 4.9 days for the validation dataset, respectively. Two simple linear regression models (YP and YF) were established using LAD as the variable to predict corn yield; the yield model (YP) used LAD from predicted emergence to maturity, and the yield model (YF) used LAD for a predetermined period from DOY 89 to a particular EOD. When state/province corn yields for the validation dataset were predicted at DOY 321, near completion of the corn harvest, the YP model performed much better than the YF model, with RMSE values of 0.68 t/ha and 0.66 t/ha for Illinois and Heilongjiang, respectively. The YP model showed a similar or better performance, even for the much earlier yield prediction at DOY 257, compared to that of the YF model. In conclusion, the phenology and yield models were developed based only on logistic changes in remote sensing-derived LAD, and predicted phenological dates and corn yields with considerable accuracy and precision for the two regions selected for this study. However, these models must be examined for spatial portability in more diverse agro-climatic regions.
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Biology, Agricultural Sciences & Agronomy; green manure; soil microbial communities; crop health; Illumina sequencing
Online: 18 September 2016 (10:56:53 CEST)
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Green manure could improve soil nutrients and crop production, playing a significant role in sustainable agriculture. However, the impacts of green manure on crop health and the roles soil microbial communities play in the process haven’t been clarified clearly yet. In this study, we investigated soil microbial community composition and structure in four tobacco farmlands, which were treated with different green manure (control, ryegrass, pea and rape), using 16S rRNA gene amplicons sequencing. Results showed that green manure had significant impacts on soil properties, microbial communities and tobacco health. First, soil total C, N and Ca content increased significantly in groups treated with green manure than control. Second, soil community diversity was significantly higher in groups treated with green manure. Third, green manure especially ryegrass, decreased tobacco disease (bacterial wilt) rate dramatically, and the process might be mediated by soil microbial communities. On the one hand, several microbial populations were found to be potentially disease inducible or suppressive. For example, the abundances of Dokdonella and Rhodanobacter were positively correlated to tobacco disease rate, while Acidobacteira_Gp4 and Gp6 had negative correlations with tobacco disease. On the other hand, soil microbial communities were shaped by soil properties (e.g., pH, C and N content). In conclusion, our research showed that green manure could increase soil nutrients directly, and further improve tobacco health mediated by soil microorganisms, which may shed light on revealing interactions among soil properties, microorganisms and plants.
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Biology, Agricultural Sciences & Agronomy; Lilium spp.; anthocyanins; purple ovaries; transcriptome; transcriptional network
Online: 5 September 2016 (04:37:09 CEST)
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Lily tepals have a short lifespan. Once the tepals senesce, the ornamental value of the flower is lost. Some cultivars have attractive purple ovaries and fruits which greatly enhance the ornamental value of Asiatic hybrid lilies. However, little is known about the molecular mechanisms of anthocyanin biosynthesis in Asiatic hybrid lily ovaries. To investigate the transcriptional network that governs purple ovary coloration in Asiatic hybrid lilies, we obtained transcriptome data from green ovaries (S1) and purple ovaries (S2) of Asiatic ‘Tiny Padhye’. Comparative transcriptome analysis revealed 4228 differentially expressed genes. Differential expression analysis revealed that nine unigenes including four CHS genes, one CHI gene, one F3H gene, one F3′H gene, one DFR gene, and one UFGT gene were significantly up-regulated in purple ovaries. One MYB gene, LhMYB12-Lat, was identified as a key transcription factor determining the distribution of anthocyanins in Asiatic hybrid lily ovaries. Further qPCR results showed unigenes related to anthocyanin biosynthesis were highly expressed in purple ovaries of Asiatic ‘Tiny Padhye’ at stages 2 and 3, while they showed an extremely low level of expression in ovaries of Asiatic ‘Yellow Pixels’ during all developmental stages. In addition, shading treatment significantly decreased pigment accumulation by suppressing the expression of several unigenes related to anthocyanin biosynthesis in ovaries of Asiatic ‘Tiny Padhye’. These results could further our understanding of the molecular mechanisms of anthocyanin biosynthesis in Asiatic hybrid lily ovaries.
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Biology, Agricultural Sciences & Agronomy; soil tillage; tractors; soil water content; physical soil properties; GPS; energy requirement; CO2 emission
Online: 2 August 2016 (14:50:33 CEST)
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In this study the effects of three different main preparatory tillage operations [ploughing at 0.4 m (P40) and 0.20 m (P20) depth and minimum tillage at 0.20 m depth (MT) each of them carried out at two different soil water contents (WC) [low, 58% (LH) and high, 80% (HH) of field capacity] were investigated. The results obtained in this research show high values of soil strength in term of Penetration resistance (CI) and shear strength (SS) particularly in deeper soil layers at lower water content. Fossil-fuel energy requirements both for P40 LH and P20 LH were 25 and 35% higher with respect to the HH treatments and tractor slip were very high (P40 LH = 32.4%) with respect to the P40 HH treatment (16%). Therefore soil water content had significantly influenced tractor performance during soil ploughing, particularly at 0.40 m depth while MT was not influenced at all. A significant correlation between grain yield and soil penetration resistance was found highlighting how soil strength may be good indicator of its productivity. Obtained results during these field tests allowed considering MT and P20 treatments more suitable for this type of soil in climate change scenarios.