Submitted:
12 September 2025
Posted:
15 September 2025
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Abstract
This paper proposes a methodology based on the combined application of climate indices for precipitation and temperature along with multispectral Sentinel 2 imagery, used to generate vegetation indices that serve to diagnose the condition of subtropical irrigated crops through a predictive model. These crops demand significant irrigation, and in Mediterranean semi-arid environments, where water scarcity and drought periods are increasingly frequent and severe, this presents a serious problem. The aim of this methodological proposal is to address the need to adjust cultivated areas to actual water availability. It is now evident and necessary to implement efficient management of agricultural practices, avoiding the expansion of irrigated areas when there is not enough water available. As a result of this work, the climatic interrelation with the real condition of the crops is demonstrated.
Keywords:
1. Introduction
2. Materials and Methods
2.1. Study Area
2.2. Materials and Methods
2.3. Temporal Delimitation of Drought Periods
2.4. Satellite Image Acquisition and Processing
- 1)
- Download Sentinel 2A and 2B satellite images at Level L1C using the “Product Library” tool for the selected dates that include our study area, which is divided into two images.
- 2)
- Atmospheric correction of the images is performed with the “Sen2Cor” tool, upgrading them from Level L1C to Level L2A to enhance visualization.
- 3)
- Crop the images spatially and spectrally using the “Subset” tool, defining the study area and selecting the bands to be used—specifically bands 2, 3, 4, 8, and 11—to reduce data volume.
- 4)
- Standardize the spatial resolution of the spectral bands to 10 meters with the “Resampling” tool, since band 11 has a resolution of 20 meters and the rest are 10 meters.
- 5)
- Merge the two images that make up the study area with the “Mosaicking” tool, using the WGS84 projection, ortho-rectified with the Copernicus Global DEM at 30 meters and a pixel size of 10 meters.
- 1)
- Images were selected for the study’s temporal range: from 2015 (the earliest available images) to 2024. It was necessary to harmonize images taken before and after January 25, 2002, to ensure comparability, as changes in image processing within the Copernicus program— which began generating images with new radiometric calibration— directly affected temporal image analysis, especially when conducting comparisons of vegetation indices as in this case.
- 2)
- Images from the area of interest were chosen by selecting only the tile or tiles (100x100 km2 grid images, orthorectified in UTM/WGS84 projection) that encompass the study area, thus providing the input geometry.
- 3)
- A clip was performed using this input geometry, cropping the 100x100 km2 images to only the area corresponding to the specific crop and variety under study. This approach allows for an accurate assessment of the heterogeneity in crop evolution, minimizing interference from other crop types or varieties. Achieving data homogeneity is essential.
- 4)
- Pixels associated with water vapor (clouds) were removed, as their reflectance does not represent the surface of interest and would generate negative values when analyzing vegetation indices. To achieve this, Sentinel-2 Level-2A’s QA60 band is used—see Table 2 for a simplified overview of the filtering criteria—by which a straightforward function is created for cloud masking. Technically, QA60 is not a true spectral band but rather reuses two far-infrared water vapor reflectance bands. The source bands are B10 and B11, with the QA60 service flagging, via a Boolean filter, any bits where opaque clouds are present. With this, we can assess each image, apply all previous filters, and finally apply this last step, which removes all pixels where QA60 indicates opaque clouds.
- 5)
- When applying a bitmask for QA60, each image must be processed sequentially by date, applying the cloud-masking algorithm, and saving it with its corresponding date and without clouds. If a particular image is fully cloud-covered, it is excluded from the image collection. If it is mostly clear, it is retained, and for images with a certain proportion of removed pixels, their influence will be weighted accordingly in subsequent mean calculations.
- (1)
- Bitmask for QA60.
2.5. Image Analysis, Application of Spectral Indexes and Statistical Analysis
2.6. Classification of Indexes, Cluster Analysis and Mapping
- 1)
- For vegetation indices focused on detecting crop health and vigor, a distinction is made between crops with low and high vegetation cover, taking into account that young plantations may be included among those with low cover.
- 2)
- For vegetation indices measuring canopy and soil moisture content, a differentiation is established between irrigated and non-irrigated crops, as well as the water stress they may experience due to a lack of water or insufficient irrigation.
- 1)
- Disposition, quantification, and evolution of the crop. Understanding physical aspects is essential both to comprehend how the crop responds to specific events and interventions, and to interpret monitoring results. To achieve this, a temporal sequence of RGB images is conducted. This analysis allows for observation of crop evolution and temporal variability, enabling detection of possible impacts suffered by the crop, its response to solutions or management techniques applied in the field, correlation of crop behavior in areas with different productivity, as well as the recording of this information for comparison at different times.
- 2)
- Study of crop behavior according to the different growth cycles during the same season. Throughout the production months, information is obtained to assess the state, variability, and evolution of crop vigor and water status, with the aim of detecting impacts and anomalies.
- 3)
- Crop characterization. This is carried out considering three variables: Tree Count Management, Tree Height Measurement, and Erosion Risk, with the intention of evaluating the homogeneity of the cultivated area under analysis.
3. Results
3.1. Temporal Analysis of Drought
3.2. Statistical Analysis, Classification and Clustering of Spectral Indices
- 1)
- Planting season. Takes place from spring through early summer. Spacing begins at 4x4 m² to 8x8 m², or even 4x8 m², and when the trees grow and their canopies touch, the center tree is removed. This, of course, determines the spectral response. In addition to the planting framework, several conditions must be understood for optimal plant development: soil status, moisture conditions, and the climate balance.
- 2)
- Harvest season. Fruit is collected from November through May. Harvest usually starts in November, but only if fruit drops or if it has grown substantially. Most commonly, the harvest begins in December and ends by late April, though these dates can shift based on the year and temperature, as leaving fruit on the tree influences flowering. At this stage, it is crucial to track the overall health of the plant.
- 3)
- Pruning stage. Performed twice a year: once at the end of winter (March) and once in summer (July/August), though some growers carry out pruning in September. Notably, August is usually a critical month in most Mediterranean climate cultivation zones, as not only can the developing fruit deteriorate due to heat, but the plant itself also suffers from water stress.
- 4)
- Flowering stage. Typically occurs in spring, in March and April. In semi-arid regions, flowering coincides with rising temperatures, making it necessary to monitor conditions closely to ensure this process unfolds as desired, especially since after these months (June–July) fruit drop can increase due to heat and the small size of young fruits.
- 5)
- Fertilization period. Generally, three applications are made: one at the onset of the rainy season (late September/October) and two more every two months (December and February). It is important to monitor this process, as fertilization is often carried out indiscriminately, without considering the diverse soil conditions.
| Vegetation Index | Classification | Value | Description | 2018 ha | 2018 % | 2023 ha | 2023 % | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| NDVI | 1 | -1 — 0.15 | uncultivated area | 450.90 | 3.53 | 1,998.47 | 13.9 | ||||
| 2 | 0.15 — 0.30 | low cover crop | 2,612.02 | 20.43 | 5,887.73 | 41.00 | |||||
| 3 | 0.30 — 0.45 | medium cover crop | 2,914.94 | 22.80 | 3,954.84 | 27.50 | |||||
| 4 | 0.45 — 0.60 | medium/high cover crop | 2,538.37 | 19.85 | 2,176.69 | 15.14 | |||||
| 5 | 0.60 — 1 | high cover crop | 4,269.11 | 33.39 | 354.83 | 2.47 | |||||
| NDMI | 1 | -1 — 0 | non-irrigated area | 4,714.05 | 36.87 | 5,443.32 | 37.87 | ||||
| 2 | 0 — 1 | irrigated area | 8,071.30 | 63.13 | 8,929.24 | 62.13 | |||||
| MSI | 1 | 0.16 — 0.90 | crops without water stress | 6,654.04 | 52.04 | 6,131.28 | 42.66 | ||||
| 2 | 0.9 — 1.3 | slightly water-stressed crops | 4,754.9 | 37.19 | 7,930.97 | 55.18 | |||||
| 3 | 1.3 — 1.9 | moderate water-stressed crops | 1,359.11 | 10.63 | 309.99 | 2.16 | |||||
| 4 | 1.9 — 2.5 | extremely water-stressed crops | 16.42 | 0.13 | 0.32 | 0.00 | |||||
| 5 | >2.5 | water | 0.87 | 0.007 | 0.00 | 0.00 | |||||
3.3. Mapping
4. Discussion
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
| BOA | Bottom of Atmosphere |
| ESA | European Space Agency |
| GNDVI | Green Normalized Difference Vegetation Index |
| GSI | Grain Size Index |
| KMO | Kaiser-Meyer-Olkin method |
| LAI | Leaf Area Index. |
| MSI | Moisture index |
| NDDI | Normalized Difference Drought Index |
| NDMI | Normalized Difference Moisture Index |
| NDVI | Normalized Difference Vegetation Index |
| NDW1 | Normalized Difference Water Index |
| SAIH | Sistema Automático de Información Hidrológica |
| SNAP | Sentinel Application Platform |
| SPEI | Standardised Precipitation-Evapotranspiration Index |
| SPI | Standardized Precipitation Index |
| SIPNA | Sistema de Información sobre el Patrimonio Natural de Andalucía |
| SPSS | Statistical Package for the Social Sciences |
| TOA | Top of Atmosphere |
| WMO | World Meteorological Organization |
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| Sentinel-2 bands | Sentinel-2A | Sentinel-2B | Spatial resolution (m) | ||
|---|---|---|---|---|---|
| Central wavelength (nm) | Bandwidth (nm) | Central wavelength (nm) | Bandwidth (nm) | ||
| Band 1 – Coastal aerosol | 442.7 | 21 | 442.2 | 21 | 60 |
| Band 2 – Blue | 492.4 | 66 | 492.1 | 66 | 10 |
| Band 3 – Green | 559.8 | 36 | 559.0 | 36 | 10 |
| Band 4 – Red | 664.6 | 31 | 664.9 | 31 | 10 |
| Band 5 – Vegetation red edge | 704.1 | 15 | 703.8 | 16 | 20 |
| Band 6 – Vegetation red edge | 740.5 | 15 | 739.1 | 15 | 20 |
| Band 7 – Vegetation red edge | 782.8 | 20 | 779.7 | 20 | 20 |
| Band 8 – NIR | 832.8 | 106 | 832.9 | 106 | 10 |
| Band 8A – Narrow NIR | 864.7 | 21 | 864.0 | 22 | 20 |
| Band 9 – Water vapour | 945.1 | 20 | 943.2 | 21 | 60 |
| Band 10 – SWIR – Cirrus | 1373.5 | 31 | 1376.9 | 30 | 60 |
| Band 11 – SWIR | 1613.7 | 91 | 1610.4 | 94 | 20 |
| Band 12 – SWIR | 2202.4 | 175 | 2185.7 | 185 | 20 |
| Bands | Pixel size | Description |
|---|---|---|
| QA10 | 10 | Always empty |
| QA20 | 20 | Always empty |
| QA60 | 60 | Cloud mask (1) |
| VI | Formula | Bands | Application |
|---|---|---|---|
| Normalized Difference Vegetation Index | NDVI = (NIR - RED) / (NIR + RED) | NDVI = (B8 – B4) / (B8 + B4) | Monitoring vegetation reduction and water stress in cultivated areas |
| Green Normalized Difference Vegetation Index | GNDVI = (NIR - GREEN) / (NIR + GREEN) | GNDVI = (B8 – B3) / (B8 + B3) | Similar to NDVI, it is more sensible to chlorophyll |
| Green Chlorophyll Index | GCI = (NIR / GREEN) - 1 | GCI = (B8 / B3) -1 | Identify areas with water deficiencies and monitor the immediate effects of drought on crops |
| Normalized Difference Water Index | NDWI = (GREEN - NIR) / (GREEN + NIR) | NDWI = (B3 – B8) / (B3 + B8) | Detect the presence of water |
| Normalized Difference Moisture Index | NDMI = (NIR - SWIR) / (NIR + SWIR) | NDMI = (B8 – B11) / (B8 + B11) | Detecting soil moisture and water content in vegetation |
| Moisture Stress Index | MSI = SWIR / NIR | MSI = B11 / B8 | Identifying areas of high vulnerability to drought |
| Normalized Difference Drought Index | NDDI = (NDVI - NDWI) / (NDVI + NDWI) | Monitoring and assessing drought, identifies risk areas |
| RL | SPEI 6 | SPEI 12 | SPEI 24 | SPEI 36 | SPEI 48 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RL | Pearson's r | — | |||||||||||||
| p-value | — | ||||||||||||||
| SPEI 6 | Pearson's r | 0.522 | *** | — | |||||||||||
| p-value | < .001 | — | |||||||||||||
| SPEI 12 | Pearson's r | 0.662 | *** | 0.854 | *** | — | |||||||||
| p-value | < .001 | < .001 | — | ||||||||||||
| SPEI 24 | Pearson's r | 0.769 | *** | 0.717 | *** | 0.870 | *** | — | |||||||
| p-value | < .001 | < .001 | < .001 | — | |||||||||||
| SPEI 36 | Pearson's r | 0.813 | *** | 0.613 | *** | 0.759 | *** | 0.929 | *** | — | |||||
| p-value | < .001 | < .001 | < .001 | < .001 | — | ||||||||||
| SPEI 48 | Pearson's r | 0.800 | *** | 0.576 | *** | 0.681 | *** | 0.838 | *** | 0.940 | *** | — | |||
| p-value | < .001 | < .001 | < .001 | < .001 | < .001 | — | |||||||||
| Note. * p < .05, ** p < .01, *** p < .001. RL: reservoir level (hm3).Period analysed: 1995–2024. | |||||||||||||||
| NDVI | GNDVI | GCI | NDWI | NDMI | MSI | NDDI | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NDVI | Pearson's r | — | |||||||||||||||
| p-value | — | ||||||||||||||||
| GNDVI | Pearson's r | 0.979 | *** | — | |||||||||||||
| p-value | < .001 | — | |||||||||||||||
| GCI | Pearson's r | 0.921 | *** | 0.928 | *** | — | |||||||||||
| p-value | < .001 | < .001 | — | ||||||||||||||
| NDWI | Pearson's r | 0.824 | *** | 0.743 | *** | 0.772 | *** | — | |||||||||
| p-value | < .001 | < .001 | < .001 | — | |||||||||||||
| NDMI | Pearson's r | 0.824 | *** | 0.743 | *** | 0.772 | *** | 1.000 | *** | — | |||||||
| p-value | < .001 | < .001 | < .001 | < .001 | — | ||||||||||||
| MSI | Pearson's r | -0.785 | *** | -0.698 | *** | -0.706 | *** | -0.988 | *** | -0.988 | *** | — | |||||
| p-value | < .001 | < .001 | < .001 | < .001 | < .001 | — | |||||||||||
| NDDI | Pearson's r | -0.016 | * | -0.016 | * | -0.011 | -0.012 | -0.012 | 0.012 | — | |||||||
| p-value | 0.014 | 0.012 | 0.075 | 0.056 | 0.056 | 0.069 | — | ||||||||||
| Component | ||||
|---|---|---|---|---|
| 1 | 2 | 3 | Uniqueness | |
| MSI | -0.921 | 0.00722 | ||
| NDMI | 0.891 | 0.00224 | ||
| NDWI | 0.891 | 0.00224 | ||
| GNDVI | 0.917 | 0.01958 | ||
| GCI | 0.875 | 0.06121 | ||
| NDVI | 0.495 | 0.855 | 0.02425 | |
| NDDI | 1.000 | 1.34e-6 | ||
| Final cluster | NDVI | NDMI | MSI | Description |
|---|---|---|---|---|
| 0 | 1 | 1—2 | 1—5 | uncultivated area/young crop |
| 1 | 4—5 | 2 | 1 | irrigated high cover crop |
| 2 | 2—3 | 2 | 1 | irrigated low cover crop |
| 3 | 4—5 | 2 | 2—4 | irrigated water-stressed high cover crops |
| 4 | 2—3 | 2 | 2—4 | irrigated water-stressed low cover crops |
| 5 | 4—5 | 1 | 2—4 | non-irrigated water-stressed high cover crop |
| 6 | 2—3 | 1 | 2—4 | non-irrigated water-stressed low cover crop |
| Cluster description | 2018 ha |
% |
2023 ha |
% |
|---|---|---|---|---|
| Uncultivated área/young crop | 450.90 | 3.53 | 1,998.47 | 13.90 |
| Irrigated high cover crop | 5,817.10 | 45.50 | 2,523.06 | 17.55 |
| Irrigated low cover crop | 801.35 | 6.27 | 3,530.44 | 24.56 |
| Irrigated water-stressed high cover crop | 539.08 | 4.22 | 8.37 | 0.06 |
| Irrigated water-stressed low cover crop | 829.16 | 6.49 | 2,524.14 | 17.56 |
| Non-irrigated water-stressed high cover crop | 451.31 | 3.53 | 0.09 | 0.001 |
| Non-irrigated water-stressed low cover crop | 3,896.45 | 30.48 | 3,788.00 | 26.36 |
| Total | 12,785.35 | 100 | 14,372.56 | 100 |
| CHANGES | 2018 | 2023 | change ha | change % |
|---|---|---|---|---|
| 1 | unchanged | unchanged | 5,349.77 | 37.22 |
| 2 | non-irrigated water-stressed low cover crop | uncultivated area | 3,008.36 | 20.93 |
| 3 | irrigated high cover crop | irrigated low cover crop | 1,960.13 | 13.64 |
| 4 | non-irrigated water-stressed low cover crop | irrigated water-stressed low cover crop | 1,087.28 | 7.56 |
| 5 | non-irrigated water-stressed low cover crop | irrigated low cover crop | 812.44 | 5.65 |
| 6 | irrigated high cover crop | irrigated water-stressed low cover crop | 521.40 | 3.63 |
| 7 | irrigated high cover crop | non-irrigated water-stressed low cover crop | 454.68 | 3.16 |
| 8 | irrigated water-stressed low cover crop | irrigated low cover crop | 432.24 | 3.01 |
| 9 | non-irrigated water-stressed high cover crop | irrigated low cover crop | 259.65 | 1.81 |
| 10 | non-irrigated water-stressed high cover crop | non-irrigated water-stressed low cover crop | 252.95 | 1.76 |
| 11 | irrigated low cover crop | irrigated water-stressed low cover crop | 233.66 | 1.63 |
| Total | 14,372.56 | 100 |
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