Metabolomics is a powerful approach for monitoring metabolic effects in a particular situation by qualitatively or quantitatively analyzing metabolites related to specific physiological or pathological responses within a biological process. Rapeseed is a major source of vegetable oil and contains a wide variety of metabolites. Recent advances, particularly the integration of metabolomics with other omics approaches, now allow us not only to obtain a comprehensive overview but also to perform detailed analyses of key metabolites that respond to specific conditions. In this review, we summarize recent progresses in rapeseed metabolomics study, introduce the key metabolites uncovered by this approach, and discuss those associated with growth & development, and abiotic and biotic stresses, including macronutrient availability, temperature, water stress, salt stress, and cadmium toxicity. Future perspectives and current challenges in metabolomics are also discussed, along with its potential for breeding applications aimed at developing new rapeseed varieties with stable, high-yield, and high-quality traits.