Accelerating sustainable food system transitions requires spatially explicit integration of localproduction conditions and nutritional priorities, yet such assessments remain scarce, particularlyfor low- and middle-income countries. We developed an open-source, reproducible nutritionalLife Cycle Assessment model – Local Environmental and Nutritional Scoring (LENS) – andanalyzed sub-national food supply chains across six environmental impact categories in Kenyaand Rwanda. Results reveal strong context dependency: terrestrial animal products showcomparable impacts to most plant-source foods when comprehensively assessed. Enviro-nutritional efficiencies tend to be highest for wild-caught fish and seafood, pulses, fruit andvegetables from low-input systems, and lowest for starchy staples and poultry. Substantialvariation within food groups, between co-products, and across space necessitates interpretingscores at landscape level rather than as independent benchmarks for scaling production.