Submitted:
28 January 2026
Posted:
05 February 2026
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Abstract

Keywords:
1. Introduction
2. Discussion and the Future of SSF
3. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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| Outcome target | Representative SSF system(s) | Quantitative effect examples | Notes/implications | Key sources (year) |
| Protein content and bioavailability Increases | Canola meal × Pleurotus ostreatus (≈12 d); Soybeans × P. ostreatus (long run); Peanut press cake (oncom) × Neurospora sitophila/Rhizopus oligosporus; Okara × R. oligosporus/A. oryzae; Tempeh soy × Rhizopus | Content: +11–18% (canola); +27–28% (soy, 31 d); 52.6–55.35% (peanut press cake, dry basis); Essential AAs of > 12.06 g/100 g; Digestibility increased quality; >50% of soy protein became free amino acids (tempeh) | Mix of concentration effect + de novo fungal protein; enables protein-dense composite foods. Fungal amino acid spectrum complements legumes/cereals Protease/peptidase action. | Heidari 2022; He 2024; Nuramlia 2024; Wijaya 2024 ; Sitanggang 2020; van Veen & Sohaefer 1950; Steinkraus 2004; Wu 2025; Yegin 2025; Kumar 2025 |
| β-glucan Increases | Cottonseed cake + Lathyrus (80:20) × P. ostreatus (11 d); Fusarium venenatum mycoprotein and binding of bile salts | 5× increase in Beta-glucan content; Mycoprotein fiber 24% (DW), 2/3 β-glucans and 1/3 chitin | Adds soluble fiber with immune-metabolic potential55; texture contribution. In vitro digestion of mycoprotein reduced lipolysis and bound bile salts, a mechanism associated with reduced blood cholesterol in humans | Eliopoulos 2024; Ritota & Manzi 2023; Colosimo 2020 |
| Reduced Anti-Nutrients (phytates, glucosinolates, sinapine, gossypol) | Canola meal × P. ostreatus; Oats/Barley × Rhizopus (tempeh-style); Cottonseed + Lathyrus × P. ostreatus | Phytates: −55–76% (canola); oats −74%, barley -89%; Glucosinolates : -98.8%; Sinapine:99.8%; Gossypol: total reduction 60-80%, with some reporting up to −89%, and free gossypol −12.45% | Increases Fe/Zn accessibility; supports bioavailability gains; Major removal of pungent/bitterness drivers; flavor improvement; increased protein digestibility | Heidari 2022; Cai 2014; Handoyo & Morita 2006; Ahnan-Winarno 2021; Eklund-Jonsson 2006; Eklund-Jonsson 2008; Niu 2015; Gbenle 2025; Eliopoulos 2024 |
| Aflatoxin Reduction (contaminated inputs) | Peanut press cake (black oncom) × Neurospora/Rhizopus | −50–70% | Requires tight process control and clean sourcing | Wijaya 2024 |
| Increased antioxidants and phenolics | Soy × P. ostreatus (long SSF); Okara × R. oligosporus/A. oryzae; Oats × Rhizopus; Oats × R. oryzae; Okara × Rh. oligosporus/Asp. oryzae; Soybeans × P. ostreatus | Soy phenolics 4.47×, DPPH 3.92×; Okara +260–550% antioxidant; Oats total phenolics increase | Liberation of bound phenolics; flavor co-benefits of reduced bitterness and astringency; longer shelf-stability | He et al 2024; Sitanggang 2020; Cai 2014; Ahnan-Winarno 2021; Verduzco-Oliva 2020; Chen 2020; Quieroz Santos 2018 |
| Omega fatty acids (ω-3) profile | Grass pea + flax press cake × Rhizopus (tempeh) | ALA increases by >10×; ratio of ω6:ω3 from 11:1 to 0.5–2.5:1 | Co-substrate strategy; retains PUFA while carbs fuel growth | Stodolak 2013; Ahnan-Winarno 2021 |
| Vitamin & Mineral content and absorption increases | Okara (red oncom) × Neurospora intermedia; Barley meal × Rhizopus (tempeh-style) vs. boiled barley | Ca 215 mg/100 g; P 66 mg/100 g; Fe 12.5 mg/100 g; non-heme Fe absorption 5.5% vs. 3.0% (+83% relative); Vitamin B1 raised to 150 µg/100 g | Demonstrates micronutrient density in fermented matrices | Adebo 2020; Asghar 2023; Wijaya 2024; Eklund-Jonsson et al. 2008; van Veen & Sohaefer 1950; Anhan-Winarno 2021; Yegin 2025 |
| Flavor balance improvements | Barley/oats × Rhizopus (with/without yeasts); SSF soy/cereal × Pleurotus/Rhizopus; Brassica meals × Pleurotus; cereal/legume tempeh × Rhizopus | Reduced grassy, beany flavor ratings; increased glutamate, 5′-GMP/IM savory flavor volatiles; increased pyrazines, Strecker aldehydes, 2-acetylpyrrole for cooking step flavor expression; Sensory bitterness falls as sinapine/IP6 decline | Sensory lift via proteolysis + ribonucleotides + Maillard on cooking | Reis 2012; Carrasco-Gonzalez 2017; Feng 2007; Jelen 2013; Handoyo and Morita 2006; Amin 2020; Tao 2022; Zhang 2024; He 2024; Heidari 2022; Eklund-Jonsson 2006 |
| Texture, moisture and cohesion improvements | Cereal/legume SSF flours; Pleurotus (esp. P. eryngii) | higher water holding capacity (WHC); better juice release; elastic, sliceable networks (hyphal entanglement); Dense, anisotropic mycelial mats; Moisture 55–65%; 2–4 mm particle size; O2 diffusion | Enables anisotropic, meat-like bite with minimal texturizing | Godschalk-Broers 2022; Dekkers 2018; Carrasco-González 2017; Ritota & Manzi 2023; He 2024 |
| Allergenicity | Buckwheat soba (tempeh-processing) × Rhizopus; (lupin proteomics in SSF, various); Lupin × Rhizopus; peanut press cake oncom × Neurospora/Rhizopus | Loss of allergen bands; reductions in IgE not always reported; Lupin: β-conglutin peptides reduce; Peanut: IgE binding slightly lower. | Promising but awaiting more research to be clinically validated | Handoyo & Morita 2006; Ahnan-Winarno et al (2021); Tahmasian 2023 |
| Compound | Foodstuff Source Examples | Effects on Consumption | Example Impacts of Combining Through SSF | References |
| Phytate | Brassica meals, cereals, okara, brans, spent grains, pomace, pseudocereals | Chelates Fe, Zn, Ca, Mg, lowering bioavailability | Fungal phytases (e.g., Rhizopus, Aspergillus, Pleurotus) produce phytases that hydrolyze phytate releasing bound minerals | Pandey 2008; Heidari 2022; Eklund-Jonsson 2006; Eklund-Jonsson 2008; Cai 2014; Sabu 2002; Manikandan 2024; Jatuwong 2020; Zhang 2022 |
| Glucosinolates | Brassica meals (canola, mustard), cruciferous vegetables | Goitrogenic effects, thyroid dysfunction, bitter taste, reduced animal performance | Fermentation with Rhizopus oligosporus, Lactobacillus spp., or Bacillus spp. to hydrolyze glucosinolates into less harmful compounds | Adebo 2022; Heidari 2022; Traka 2016; Zuchowski 2013 |
| Sinapine | Brassicas (Rapeseed, mustard seed, and others) | Bitter, astringent taste; reduced protein digestion; may cause allergic response | Solid-state fermentation with Trametes sp., Rhizopus oligosporus, or Bacillus subtilis degrades sinapine via laccase and other enzymes | Heidari 2022; Ahnan-Winarno 2021; Adebo 2024; Manikandan 2024; Niu 2015 |
| Bound phenolics | Legumes, cereals (wheat), rapeseed, canola, quinoa, fruits, vegetables | Reduced protein/mineral bioavailability, astringency, reduced digestibility | Fermentation with Rhizopus oligosporus, Aspergillus niger, Pleurotus ostreatus, or Lactobacillus plantarum to release bound phenolics | Cai 2014; Sitanggang 2020; Anhan-Winarno 2021; Yasar 2020; Pascual 2025; Verduzco-Oliva 2020; Bhanja Dey 2014; Yegin 2025 |
| Tannins | Legumes, cereals, nuts, tea, fruits, vegetables | Reduced protein digestibility, astringency, toxicity at high intake | Fermentation with tannase-producing fungi (e.g Penicillium glabrum, Aspergillus glaucus, A. niger, Rhizopus sppand others) to hydrolyze tannins | Aguilar 2002; Saad 2024; Górska 2025; Traka, 2016; Górska 2025; Sharma 2014; van de Lagemaat 2004 |
| Protease inhibitors/lectins | Legumes (soybeans, kidney beans, chickpeas), cereals | Inhibit digestive enzymes, reduce protein utilization, cause pancreatic hypertrophy | Fermentation with Rhizopus oligosporus, Aspergillus oryzae, Bacillus subtilis, or protease-secreting fungi to degrade inhibitors/lectins | Friedman 2001; Wolf 1970; Ng 2011; Górska 2025; Adebo 2022; Yasar 2020; Mukherjee 2016; Gbenle 2025 |
| Allergenic proteins (β-conglutin) | Lupin seeds (Lupinus angustifolius, L. mutabilis), fungal/yeast biomass | IgE binding in sensitized individuals and allergenic reactions, immune hypersensitivity, reduce nutrient intake through increased excretion | Proteolysis during SSF reduces specific peptides; Fermentation with Rhizopus oligosporus, Propionibacterium spp., or protease-producing fungi to hydrolyze allergenic proteins (should be validated with immunoassays) | Tahmasian 2023; Verhoeckx 2015; Mattison 2024; Wijaya 2024 |
| Gossypol | Cottonseed meal or cake | Toxicity (liver, reproductive, cardiac), binds lysine | Solid-state fermentation with Candida tropicalis, Saccharomyces cerevisiae, Aspergillus niger, Pleurotus spp., or Paecilomyces variotii | Mageshwaran 2024; Adebo 2022; Eliopoulos 2024; Zhang 2006 |
| Saponins | Legumes (soybeans, chickpeas), quinoa, green microalgae | Bitter taste, hemolytic activity, reduced nutrient absorption | Fermentation with Rhizopus oligosporus, Aspergillus spp., Saccharomyces cerevisiae, or lactic acid bacteria to degrade saponins. SSF can alter saponin profile (sometimes reducing, sometimes increasing saponins); pre-washing/dehulling and post-processing are often required for reliable debittering. | Górska et al., 2025; Traka, 2016; Gautheron 2024 |
| Purines (nucleic acids) | Yeast-rich biomass, fungi, legumes | Uric acid load (hyperuricemia) for gout | Fermentation with Aspergillus oryzae, Blastobotrys adeninivorans, Candida utilis, or low-purine yeast strains; enzymatic degradation. Downstream RNA reduction is described by commercial operators using heat-shock to activate endogenous RNases as a standard mitigation step for fungal biomass intended for high intake. | Kaneko 2014; Adebo 2022; |
| Chitin/Beta-glucans | Fungal biomass, mushrooms, yeasts, microalgae | Reduces apparent protein digestibility in vitro; Associated with indigestion; tough chewing texture; potential allergenicity | Fermentation with chitinase/β-glucanase-producing fungi (Mucor rouxii, Aspergillus terreus, Trichoderma spp.). Milling, alkaline/thermal pretreatments, or targeted enzymatic hydrolysis can further break down to improve digestion. | Yang 2023; Bekirian 2024; Zhang 2013; Kumar 2025; El-Shora 2021 |
| Mycotoxins | Contaminated grains, nuts, by products | Toxicity (carcinogenicity, nephrotoxicity, immunosuppression, reproductive toxicity); carcinogens, hepatotoxicity, immunosuppression | Fermentation with mycotoxin-degrading fungi (Rhizopus spp., a-toxigenic strains of Aspergillus spp.); laccase/peroxidase enzymatic detoxification (lactonases, peroxidases, laccases); Aflatoxin-degrading fungi (Trichoderma reesei, Aspergillus niger, Rhizopus spp.) | Adebo 2022; Wijaya 2024; Yue 2022; Jia 2024 |
| Substrate | Typical examples | Baseline nutrition | SSF Outcomes | Formulation notes | Applied examples |
| Whole cereal grains & pseudocereals | Wheat, rice, maize, barley, oats, millet; buckwheat, quinoa | High starch, moderate protein; bound phenolics & phytate common | Increase protein concentration and/or digestibility; Increase free phenolics/antioxidants; Decrease phytate; added umami/volatiles and other sensory gains via fermentation metabolites | Steam/gelatinize grains or hydrate to support colonization; adjust moisture (commonly ~60–65% wb); control particle size and aeration to modulate moisture; inoculate warm; mill post-SSF for high-protein flour | Whole-grain cereal tempeh fermentation reduced phytate (oats/barley; Rhizopus) (Eklund-Jonsson 2006); barley tempeh increased Fe absorption vs. boiled barley (Eklund-Jonsson 2008); Diverse cereal grains show increased phenolics/antioxidant under (Xu 2018); more grain-fermentation phenolics effects (Adebo 2020). phenolics effects (Adebo 2020). |
| Legumes | Soybeans, chickpeas, lupin, black bean; legume flours | High protein (often 30–50% db), PUFA, protease inhibitors, lectins, phytates; beany notes (bitter phenolics) | Increase protein quality & digestibility (proteolysis);increased free amino acids; decrease in many anti-nutrients; EAA profile improved; increased phenolics and antioxidants including phenol pigments | Balance moisture and oxygen; consider dehulling/cooking to reduce flatulence factors and improve texture; co-blend with cereals when additional carbon is needed | Soybeans × Rhizopus oligosporus SSF (Zhang 2022). Black bean SSF with fungi increased antioxidative activity and phenolics (Lee 2008). White lupin SSF reduced allergenic peptides (proteomics) (Tahmasian 2023). |
| Oilseed, meals and press cakes | Canola/rapeseed meal, cottonseed cake, sunflower, sesame, coconut; okara and other protein-rich byproducts | High protein (~30–50% db), variable lipids; constraints include sinapine/glucosinolates (Brassica) or gossypol (cottonseed); bitterness/astringency | Increased protein concentration and digestibility; reduced brassica anti-nutrients; detoxification of gossypol | Co-ferment with a cereal fraction when C:N is limiting; manage residual oil to avoid hydrophobic zones; verify food-grade sourcing (esp. cottonseed) | Canola meal × Pleurotus ostreatus SSF degraded sinapine and glucosinolates (Heidari M. 2022,). Canola-meal upgrading (Heidari F. 2022). Cottonseed cake + Lathyrus pericarp x P. ostreatus increased β-glucans and decreased gossypol (Eliopoulos 2024). Wheat grains and soybeans × P. ostreatus nutritional improvements (Pascual 2025). |
| Fiber- & bran-rich byproducts | Wheat/rice bran, corn fiber; fruit/veg pomace (apple, grape, pumpkin); spent brewers’ grains | High insoluble fiber, micronutrients; low protein; bound phenols | Increase extractable phenols and antioxidants; partial fiber depolymerization softening fiber matrix; increased moisture holding capacity | Use as a fraction (e.g., 10–40%) blended into cereal/legume/oilseed bases to maintain growth; fine grinding improves uniform colonization; ensure low contaminant load and safe water activity | Wheat SSF × Rhizopus oryzae increased production of phenols (Bhanja Dey 2014). SSF as platform to produce antioxidant polysaccharides (Verduzco-Oliva & Gutierrez-Uribe 2020); cereal-grain antioxidants via SSF across fungi (Xu 2018). |
| Omega-rich seeds & lipid sources | Flaxseed, chia seed; defatted seed meals; oil press cakes | ALA/PUFA, lignans | Can improve ω-3 content and ω6:ω3 ratio in the composite when lipid fraction is blended into a carbohydrate-supporting matrix; retains PUFA while fungus consumes carbs | Pre-mix finely; excess free oil can inhibit if pooled, limit oil to avoid hydrophobic zones; combine with cereal/legume | Grass pea tempeh + flaxseed oil-cake improved nutritional value (including lipid profile) (Stodolak et al. 2013). |
| Microalgae and Aquatic biomass | Chlorella vulgaris (typically blended with cereals); Arthrospira/Spirulina (often with stabilization) | High protein and pigments; bound phenols; sensory off-notes or fishy odors; benefits from a carbohydrate carrier | Increased water retention and gellification/emulsification; broader micronutrient enhancements | Use as minor fraction (e.g., 5–30%) in cereal/legume composite; pre-treatments help support integration | P. ostreatus SSF on oat and Chlorella + oat improved protein solubility (Ayllón-Parra et al., 2025). Arthrospira SSF (Yuwanita 2025). SSF of Sargassum macroalgae with Aspergillus oryzae (Bonilla Loaiza 2022) |
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