As the reliability and validity of forensic evidence, particularly in feature comparison disciplines, confront on-going scrutiny, forensic practitioners must ensure their processes, whether for investigative, intelligence or evidential purposes are robust, scientifically grounded, and validated. In forensic facial identification, morphological analysis is internationally recognized as the preferred method for facial image comparison, and is applied during the analysis and comparison steps of the Analysis, Comparison, Evaluation, Verification (ACE-V) process, commonly applied in feature comparison. While several international proficiency tests have assessed forensic facial examiners’ accuracy in comparing mated and non-mated pairs (black box tests), fewer opportunities have focused on evaluating inter-laboratory procedures and methods. To address this gap, members of a small border and immigration focused expert working group participated in an inter-laboratory collaborative exercise designed to analyse and harmonize best practices across member laboratories. There are limited published validation studies of facial image comparison methods. This paper presents the results of a collaborative exercise that compares the methodologies of three different agencies, highlighting key similarities and differences in examiner process and decision making, and provides a foundation for the development of similar future initiatives.