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An Enhanced Lightweight Clinical Decision Support System via Refined Fine-Tuning and Intelligent Retrieval-Augmented Generation

Submitted:

29 December 2025

Posted:

30 December 2025

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Abstract
The increasing complexity of clinical decision-making demands advanced support, yet traditional Clinical Decision Support Systems (CDSS) lack flexibility, and general Large Language Models (LLMs) struggle with medical specificity, factual accuracy, and resource demands. This paper presents an Enhanced Lightweight Clinical Decision Support System, optimizing the "lightweight LLM + Retrieval-Augmented Generation (RAG)" architecture for superior accuracy, robustness, and resource efficiency. Our method employs a QLoRA fine-tuned base model and features two key innovations: a refined medical domain data fine-tuning strategy using semantic labeling and ontology-based domain balancing to enhance specialized knowledge; and an intelligent context optimization module within the RAG pipeline. This module utilizes secondary relevance re-ranking with a lightweight cross-encoder, redundancy reduction, and key information extraction to provide the LLM with precise and compact context. Experiments on medical benchmarks demonstrate that our system consistently outperforms a standard QLoRA fine-tuned model, achieving notable accuracy improvements in challenging domains such as College Medicine and Medical Genetics. This enhanced performance is achieved while maintaining a lightweight computational footprint, making our system a practical and reliable tool for clinical decision support, especially in resource-constrained settings.
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Copyright: This open access article is published under a Creative Commons CC BY 4.0 license, which permit the free download, distribution, and reuse, provided that the author and preprint are cited in any reuse.
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