Submitted:
21 June 2025
Posted:
23 June 2025
You are already at the latest version
Abstract
Keywords:
1. Background
SHANK Proteins in the Postsynaptic Density (PSD)

2. Material and Methods
3. Results
3.1. Characteristics of the Examined
3.2. Gene Expression in Patients with ASD
3.3. Correlations between SHANK1, SHANK2, SHANK3 and SHARPIN Gene Expression in the Group of Patients with ASD and Without ASD
4. Discussion
5. Conclusions
Abbreviations
| The following abbreviations are used in this manuscript | . |
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Al-Dewik, N.; Al-Jurf, R.; Styles, M.; Tahtamouni, S.; Alsharshani, D.; Alsharshani, M.; Ahmad, A.I.; Khattab, A.; Al Rifai, H.; Walid Qoronfleh, M. Overview and Introduction to Autism Spectrum Disorder (ASD). Adv Neurobiol 2020, 24, 3–42. [Google Scholar]
- Autism Spectrum Disorders Working Group of the Psychiatric Genomics Consortium. Meta-analysis of GWAS of over 16.000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia. Mol Autism 2017, 8, 21. [Google Scholar] [CrossRef]
- Beri, S.; Tonna, N.; Menozzi, G.; Bonaglia, MC.; Sala, C.; Giorda, R. DNA methylation regulates tissue-specific expression of Shank3. J Neuro chem. 2007, 101, 1380–1. [Google Scholar] [CrossRef]
- Bhandari, R.; Paliwal, JK.; Kuhad, A. Neuropsychopathology of Autism Spectrum Disorder: Complex Interplay of Genetic. Epigenetic. and Environmental Factors. Adv. Neurobiol 2020, 24, 97–141. [Google Scholar]
- Daghsni, M.; Rima, M.; Fajloun, Z.; Ronjat, M.; Brusés, JL.; M’rad, R. ; De Waard,M. Autism throughout genetics: Perusal of the implication of ion channels. Brain Behav, 2018. [Google Scholar] [CrossRef]
- de Bartolomeis, A.; Latte, G.; Tomasetti, C.; Iasevoli, F. Glutamatergic postsynaptic density protein dysfunctions in synaptic plasticity and dendritic spines morphology: relevance to schizophrenia and other behavioral disorders pathophysiology and implications for novel therapeutic approaches. Mol. Neurobiol. 2014, 49, 484–511. [Google Scholar] [CrossRef] [PubMed]
- Ebrahimi-Fakharia, D.; Sahina, M. Autism and the synapse: emerging mechanisms and mechanism-based therapies. Curr Opin Neurol 2015, 28, 91–102. [Google Scholar] [CrossRef] [PubMed]
- Eltokhi, A.; Rappold, G. and Sprengel, R. Distinct Phenotypes of Shank2 Mouse Models Reflect Neuropsychiatric Spectrum Disorders of Human Patients With SHANK2 Variants. Mol Neurosci 2018, 19. [Google Scholar] [CrossRef]
- Epstein, I.; Tushev, G.; Will, TJ.; Vlatkovic, I.; Cajigas, IJ.; Schuman, EM. Alternative polyadenylation and differential expression of Shank mRNAs in the synaptic neuropil. Philos Trans R Soc Lond B Biol Sci 2014, 369, 20130137. [Google Scholar] [CrossRef]
- Erickson, CA.; Ray, B.; Wink, LK.; Bayon, BL.; Pedapati, EV.; Shaffer, R.; Lahiri, D.K.; et al. Initial analysis of peripheral lymphocytic extracellular signal related kinase activation in autism. Journal of Psychiatric Research 2017, 84, 153–160. [Google Scholar] [CrossRef]
- Leblond, CS.; Nava, C.; Polge, A.; Delorme, R.; Bourgeron, T. ; et. al. Meta-analysis of SHANK. Mutations in Autism Spectrum Disorders: a gradient of severity in cognitive impairments. PLoS Genet, 2014; 10. [Google Scholar] [CrossRef]
- Lee, TL.; Raygada, MJ.; Rennerta OM. Integrative gene network analysis provides novel regulatory relationships, genetic contributions and susceptible targets in autism spectrum disorders. Gene 2012, 1; 496(2): 88–96. [CrossRef] [PubMed]
- Lim S, Sala C, Yoon J, Park S, Kuroda S, Sheng M, Kim E. Sharpin, a novel postsynaptic density protein that directly interacts with the shank family of proteins. Mol Cell Neurosci. 2001, 17, 385–97. [Google Scholar] [CrossRef] [PubMed]
- MacGillvary, HD.; Song, Y.; Raghavachari, S.; Blanpied, TA. Nanoscale scaffolding domains within the postsynaptic density concentrate synaptic AMPA receptors. Neuron 2013, 78, 615–22. [Google Scholar] [CrossRef] [PubMed]
- Marshall, CR.; Howrigan, DP.; Merico, D.; et al. Contribution of copy number variants to schizophrenia from a genome-wide study of 41.321 subjects. Nat Genet 2016, 49, 27–35. [Google Scholar] [CrossRef]
- Monteiro, P.; Feng, G. SHANK proteins: roles at the synapse and in autism spectrum disorder. Nat Rev Neurosci 2017, 18, 147–157. [Google Scholar] [CrossRef] [PubMed]
- Mossa, A.; Giona, F.; Pagano, J.; Sala, C.; Verpelli, C. SHANK genes in autism: Defining therapeutic targets. Prog Neuropsychopharmacol Biol Psychiatry 2017, 84 (Pt B), 416–423. [Google Scholar] [CrossRef]
- Owji, H; Eslami, M. ; Nezafat, N.; Ghasemi, Y. In Silico Elucidation of Deleterious Non-synonymous SNPs in SHANK3. The Autism Spectrum Disorder Gene. J Mol Neurosci 2020, 70, 1649–1667. [Google Scholar] [CrossRef]
- Özge, AS.; Jochner, MCE. ; Harb, H.; Kılıç, A.; Garn, H.; Schwarting, RKW.; Wöhr M. Aberrant cognitive phenotypes and altered hippocampal BDNF expression related to epigenetic modifications in mice lacking the post-synaptic scaffolding protein SHANK1: Implications for autism spectrum disorder. Hippocampus 2017, 27, 906–919. [Google Scholar] [CrossRef]
- Parellada, M.; Andreu-Bernabeu, Á.; Burdeus, M.; San José Cáceres, A.; Urbiola, E.; Carpenter, LL.; Kraguljac, NV.; McDonald, WM.; Nemeroff, CB.; Rodriguez, CI.; Widge, AS.; State, MW.; Sanders, SJ. In Search of Biomarkers to Guide Interventions in Autism Spectrum Disorder: A Systematic Review. Am J Psychiatry 2023, 180, 23–40. [Google Scholar] [CrossRef]
- Rickard, JA.; Anderton, H.; Etemadi, N.; Nachbur, U.; Darding, M.; Peltzer, N.; Lalaoui, N.; Lawlor, KE.; Vanyai, H.; Hall, C.; Bankovacki, A.; Gangoda, L.; Wong, WL.; Corbin, J.; Huang, C.; Mocarski, ES; Murphy, JM.; Alexander, WS.; Voss, AK.; Vaux, DL.; Kaiser, WJ.; Walczak, H.; Silke, J. TNFR1-dependent cell death drives inflammation in Sharpin-deficient mice. eLife 2014, 3, e03464. [CrossRef]
- Sala, C.; Vicidomini, C.; Bigi, I.; Mossa, A. , Verpelli, C. SHANK synaptic scaffold proteins: keys to understanding the pathogenesis of autism and other synaptic disorders. J. Neurochem 2015, 135, 849–858. [Google Scholar] [CrossRef]
- Schmeisser, MJ.; Ey, E.; et. al., Boeckers TM. Autistic-like behaviours and hyperactivity in mice lacking ProSAP1/Shank2. Nature 2012, 486, 261–265. [CrossRef]
- Soler, J.; Fañanás, L.; Parellada, M.; Krebs, MO.; Rouleau, GA.; Fatjó-Vilas, M. Genetic variability in scaffolding proteins and risk for schizophrenia and autism-spectrum disorders: a systematic review. J Psychiatry Neurosci 2018, 43, 223–244. [Google Scholar] [CrossRef]
- Tao-Cheng, JH.; Dosemeci, A.; Gallant, PE.; Smith, C.; Reese, T. Activity induced changes in the distribution of Shanks at hippocampal synapses. Neuroscience 2010, 168, 11–17. [Google Scholar] [CrossRef] [PubMed]
- Trambacz-Oleszak, S. Genetyczne czynniki etiologiczne w zaburzeniach ze spektrum autyzmu (ASD). Post Bioch 2021, 67. [Google Scholar] [CrossRef] [PubMed]
- Uchino, S.; Waga, C. SHANK3 as an autism spectrum disorder-associated gene. Brain Dev 2013, 35, 106–110. [Google Scholar] [CrossRef]
- Wan, L.; Liu, D.; Xiao, WB.; Zhang, BX.; Yan, XX.; Luo, ZH.; Xiao, B. Association of SHANK Family with Neuropsychiatric Disorders: An Update on Genetic and Animal Model Discoveries. Cell. Mol. Neurobiol 2021. [Google Scholar] [CrossRef]
- Won, H.; Lee, HR.; Gee., H.; et al. Autistic-like social behaviour in Shank2-mutant mice improved by restoring NMDA receptor function. Nature 2012, 486, 261–265. [CrossRef]
- Yuen, CRK.; Merico, D., Bookman, ML.; Howe, J., Glazer, D.; Pletcher, MT.; Scherer, SW… et. al. Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder. Nat Neurosci 2017, 20, 602–611. [CrossRef]
- Zeng, C; Lin, J.; Zhang, K.; Ou, H.; Shen, K.; Liu, Q.; Wei, Z.; Dong, X.; Zeng, X.; Zeng, L.; Wang W. SHARPIN promotes cell proliferation of cholangiocarcinoma and inhibits ferroptosis via p53/SLC7A11/GPX4 signaling. Cancer Sci. Nov 2022, 113, 3766–3775. [CrossRef]

| Group Gene |
Mean | Median | Minimum | Maximum | SD | Standard. Error |
|---|---|---|---|---|---|---|
| SHANK1 | -0.368904 | -0.491274 | -2.20049 | 4.316017 | 1.142664 | 0.215943 |
| SHANK2 | -0.116169 | 0.426508 | -5.50093 | 2,564082 | 1.935462 | 0.387092 |
| SHANK3 | -0.347722 | -0.154909 | -3.17376 | 1.473014 | 1.080421 | 0.230346 |
| SHARPIN | -0.296756 | -0.167272 | -1.44256 | 0.257674 | 0.496932 | 0.093911 |
| Dependent Variable: LogRQ |
Value ‘z’ for Multiple Comparisons; LogRQ Independent Variable (Grouping): Group Gene Kruskal-Wallis Test: H (3, N = 103) = 14.11320 p = 0.0028 |
|||
|---|---|---|---|---|
|
SHANK1 R:38,696 |
SHANK2 R:69.300 |
SHANK3 R:52.295 |
SHARPIN R:49.625 |
|
| SHANK1 | 3.722533 | 1.597602 | 1.368620 | |
| SHANK2 | 3.722533 | 1.946941 | 2.393212 | |
| SHANK3 | 1.597602 | 1.946941 | 0.313723 | |
| SHARPIN | 1.368620 | 2.393212 | 0.313723 | |
|
Dependent variable: LogRQ |
Value p for multiple comparisons (bilateral); LogRQ Independent variable (grouping): Group Gene Kruskal-Wallis Test: H (3. N = 103) =14.11320 p = 0.0028 |
|||
|
SHANK1 R:38.696 |
SHANK2 R:69.300 |
SHANK3 R:52.295 |
SHARPIN R:49.625 |
|
| SHANK1 | 0.001183 | 0.660790 | 1.000000 | |
| SHANK2 | 0.001183 | 0.309251 | 0.100210 | |
| SHANK3 | 0.660790 | 0.309251 | 1.000000 | |
| SHARPIN | 1.000000 | 0.100210 | 1.000000 | |
| Variable | Group Rang Spearman Correlations |
|||
|---|---|---|---|---|
| LogRQ SHANK1 |
LogRQ SHANK2 |
LogRQ SHANK3 |
LogRQ SHARPIN |
|
| LogRQ SHANK1 | - | |||
| LogRQ SHANK2 | 0.253 ni | - | ||
| LogRQ SHANK3 | 0.506* | 0.348 ni | - | |
| LogRQ SHARPIN | 0.326 ni | 0.328 ni | 0.166 ni | - |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2025 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).