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Ecological Indicators and Estimators of Fish and Crustacean Diversity in the Yucatan Peninsula

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Abstract
A Species richness is a critical measure in biodiversity studies, providing insights into the diversity and conservation value of ecosystems. This research presents an exhaustive inventory of crustaceans and fish species from the Yucatan Peninsula's epicontinental, underground, and anchialine aquatic systems. Spanning records from 1936 to 2024, the study analyzed over 2,600 entries across 670 aquatic systems, including cenotes, flooded caves lakes, springs, and wetlands. A total of 325 species were recorded, comprising 113 fish and 212 crustacean species. The richness and endemism of these species were assessed through a completeness analysis, utilizing non-parametric models (Chao 2, Jackknife 1, Bootstrap) to estimate potential species richness. Notably, the region exhibits high endemism, especially among crustaceans, with up of 50 species and 2 endemic families unique to the Yucatan Peninsula. The study underscores the importance of the eastern YP for crustaceans and central YP for fish, highlighting areas critical for conservation. These findings emphasize the need for further exploration, as the diversity of aquatic species remains incompletely understood. This comprehensive synthesis aims to inform future conservation strategies, environmental management, and regional planning efforts, particularly highlighting the vulnerability of these unique aquatic systems to environmental degradation.
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1. Introduction

Species richness is a fundamental biological concept, not only for understanding the alpha diversity that can potentially be found in the environment but also because of its relevance as an indicator of research priorities or conservation areas and for the identification of critical faunas or detection of complementary regions between protected areas [1]. The species is considered a hierarchical level to quantify biodiversity; if this quantification is also mapped, a valuable and indispensable tool is generated to make conservation and management decisions [2].
The Yucatan Peninsula (YP) harbors high aquatic species richness. The karst aquifer of the Yucatán Peninsula includes Cozumel Island and is considered the largest karstic aquifer in Mexico and in the worldwide [3], forming networks of underground aquatic systems, drainage channels, caves and underground conduits. These elements can be interconnected at different levels with cenotes, lagoons, springs and caves [4], which can be flooded with freshwater, or, as they approach the coast, they can form anchialine systems due to marine influence [5].
All these aquatic ecosystems constitute the habitats of various species of crustaceans and fish [6,7], are the main sources of water that support human activities in the region and are highly vulnerable to contaminants [4,5].
Efforts have been made to communicate the diversity, or indicators related to the existing diversity of aquatic organisms that inhabit the Yucatan Peninsula [5]. However, these have been directed mainly towards the knowledge of marine species [8,9]; the most complete reviews, focused on the aquatic inhabitants of interior systems of the Peninsula, have been directed towards the knowledge of the distribution, classification or taxonomic re-arrangement of some genera [10,11].
In addition, the known biodiversity of aquatic organisms that inhabit the aquifer of the YP has increased substantially in the last two decades [12]. The local efforts to synthetize this information are still fragmented, especially in the most widely distributed and biodiverse groups, such as crustaceans and fish, which have colonized a wide range of habitats, both freshwater, brackish and anchialine.
The definition of biological patterns such as the location and distribution of species and the status of each species based on its distribution (v. gr. cosmopolitan, endemic, areas of endemism), are considered indispensable hierarchical elements that reflect evolutionary patterns and mechanisms. Understanding these patterns is necessary to systematically guide and focus the conservation of the organisms [13].
Therefore, it is important to organize and systematize the information related to the current and potential diversity that inhabit the aquifer of the YP to make informed decisions regarding its conservation, management, environmental planning, or even territorial planning. According to the Convention on Biological Diversity, the sustainability and the knowledge of attributes such as diversity, composition and structure are fundamental to ensuring the functioning and stability of natural ecosystems [14].
An evaluation of the records of fish and crustaceans that inhabit the YP will allow us to define areas with greater species richness and with the most highly endemic biota that characterize the conspicuous ecosystems of the region. It has not been explored whether the biodiversity of these organisms is fully known or whether there could potentially be more species. Despite the enormous biodiversity that has been observed in recent years, the knowledge we have about the biodiversity of the inhabitants of the aquifer of the YP is still limited, and this idea will be explored through a completeness analysis.

2. Materials and Methods

Through an exhaustive selection of published records between 1936 and 2024 (nearly nine decades), a total inventory of crustaceans and fish inhabitants of epicontinental, underground and anchialine aquatic systems of the Yucatan Peninsula (YP) was carried out.
The Yucatan Peninsula is located between the coordinates 17°49’00” – 21°36’00” N and 86°45’00” – 91°20’00” W (Figure 1). In the region, high temperatures and humid climates dominate, and the region is geologically similar to southeastern Mexico and northern Guatemala and Belize. This platform is dominated by calcite and dolomite from the Eocene [15] and does not exceed 300 m above sea level.
Sources of information were obtained from databases such as the Zoological Abstract and the ISI Web of Science and/or were requested directly from the researchers/authors of the records. The main publications on which the inventory is based were Wilson [16], Reddel [17] Castro-Aguirre [18], Hobbs [19] Reid [20], Suárez-Morales & Elías-Gutiérrez [21], Iliffe [22], Suárez-Morales et al. [23], Castro-Aguirre et al. [24], Rocha et al. [25], Elías-Gutiérrez et al. [26], Miller [27], Brandorff [28], Cohuo et al. [29] Ceballos et al. [30], Macario et al. [31].
To include the records in the inventory, a detailed review process was followed, including a review of the synonymy(s) of each species, a review of primary sources of information, and the exclusion of records of introduced species. Taxonomic reviews were mainly based upon Botosaneanu & Iliffe [32], Dumont et al. [33], Sinev et al. [34], Schmitter-Soto [11,36], Bruce [35], Miller [27], and Barrientos-Villalobos et al. [37]. In cases where there were doubts regarding the classification, it was decided to include only those verified records (Supplementary Table S1), for example, by reviewing the geographical distribution (local, regional or global) of the genus to which the species belongs. The classification of crustacean species to the order level was based on the proposal of Martin and Davis [38], whereas that of fish was based on Nelson et al. [39]. This information was used to define the geographical position of each record, the known endemic species or genera, and the number of records by system.
A completeness analysis was carried out from a presence‒absence matrix to obtain an approximation of the richness of fish and crustaceans in the YP. Each aquatic system within the inventory was considered the minimum unit of analysis in this study (sampled units). The potential richness of the studied area for each group of organisms was estimated using the non-parametric species accumulation models of Chao 2 Jacknife 1 and Bootstrap [40], with EstimateS V. 7.0 software (accessible at http://viceroy.eeb.uconn.edu/estimates Copyright R. K. Colwell):
Chao2 = S + (L2 / 2M),
  • S = Species richness
  • L = Species number, present only in one sample
  • M = Species number present in two samples
Jack 1 = S + L (m – 1 / m),
  • S = Species richness
  • L = Species number, present only in one sample
  • M = Sample number
Bootstrap = S + (1 - pj)n,
  • S = Species richness
  • pj = Proportion of sampled units where the jth species is present
A Kruskal‒Wallis’s test was developed in Minitab V.21 to determine the integrity of the currently known inventory. Was tested the null hypothesis: H0 = the specific richness estimated, which is similar to the inventoried specific richness of fish and crustaceans observed in the Yucatan Peninsula.

3. Results

3.1. Records

Approximately 2600 records were organized in the study area in 670 aquatic systems between sinkholes, lakes, springs, groundwater, anchialines, wetlands, and some superficial, small currents. Compared with fish records, crustacean records are more evenly distributed in the YP (Figure 1). In total, 325 species were recorded (Supplementary Table S1): 113 fish species in 13 orders and 31 families (Table 1) and 212 crustacean species in 13 orders and 40 families. The records number considering the surveyed time, was almost twice in vertebrata (~ 1750) than in Crustacea (~ 925).

3.2. Species and Taxonomic Categories

In the region, the most specious order was Diplostraca, with 58 species, and the more specious orders (> 19 species) were Calanoida, Cyclopoida, Podocopida, Decapoda, Cyprinodontiformes, and Perciformes (Table 1).

3.3. Frequency of Richness

More than 10 species (a maximum of 36) were recorded in 50 aquatic systems. Aquatic ecosystems with inventories of one to seven species were highly frequent (86.3% of the systems), followed by sites with inventories of eight to 15 species (9.85% of the systems). In six systems (0.88%), more than 24 aquatic species were recorded. In each aquatic system in the Yucatan Peninsula, 6.6 species of both fish and crustaceans were found on average.
Aquatic systems with relatively high crustacean species richness (14 - 38) are located in the eastern YP; whereas the highest species richness of fish (9 – 30) are located in the central toward the North and Eastern YP (Figure 2).

3.4. Endemic Species

Up to 60 endemics of fish and crustaceans have been recorded in the surveyed area (Table 2). The species in the table correspond to 21.9% of the crustacean species and 10.2% of the fish species recorded; therefore, endemism is more common for crustaceans in the region (~ 60 aquatic free-living species) because two families and 9 genera are endemic to the Yucatan Peninsula, whereas two crustacean genera recorded here, are endemic to the Caribbean.
Twelve species of fish are endemic: O. infernale and T. pearsei are strict inhabitants of currents into caverns.

3.5. Richness Estimators

According to the estimators, it is highly probable that the inventory of aquatic organisms that inhabit the PY will increase as the number of study units increases too: potentially, it will be possible to identify up to 5% more different species of fish and up to 20% more crustaceans. In fact, the number of actual species inventoried is significantly lower than the potential specific richness, calculated by the estimators sensu the Kruskal-Wallis test (HCrustacea = 375.7, p < 0.00; HFish = 275.81, p < 0.00).

4. Discussion

The karst aquifer of the Yucatan Peninsula is one of the largest in the world [3]. It is located in the states of Campeche, Yucatan and Quintana Roo (in Mexico), extends towards Belize and northern Guatemala, and is located in a biogeographical environment dominated by humid or rainy tropical forests and high temperatures.
Geologically, the dominant sediments in the Yucatan Peninsula are limestone and dolomite from the Eocene. This aquifer includes networks of underground aquatic systems, some of which are interconnected at different levels with cenotes, lagoons, springs and epicontinental caves that, as they approach the coast, can form anchialine systems due to marine influence.
The central-southeastern region of this aquifer is geologically oldest, with sediments from the Palaeocene and Eocene [41,42]. The northern Yucatán and the entire eastern strip of Quintana Roo are formed by more recent Miocene, Pliocene and Quaternary sediments. Therefore, two main morphological units are recognized geologically across the entire Peninsula [42].
In the southern portion of the Yucatan Peninsula, in the ancestral zone, which is in the province of Petén [43], the occurrence of fish is recorded most frequently in areas where superficial currents or where lagoons are present (e.g., currents in Escarcega, Candelaria, Calakmul or lagoons in Chichancanaab, Bacalar, or Guerrero). Therefore, the distribution and diversity of fish respond to the surface relief of the Yucatan Peninsula, and in agreement with the findings of Schmitter-Soto et al. [44], we found that fish richness decreased from south to north and from the coast to inland areas.
New investigations have improved the classification of some taxonomically complex fish genera. The complexity in the organization of these organisms has been related to the lack of knowledge of actual phenetic differences, the lack of knowledge of genetic differences, or the assumption that the diversity of aquatic organisms in tropical environments is low.
However, systematic research has generated a re-arrangement of species and genera recorded in the Yucatan Peninsula, such as for Oreochromis, Chuco, Rocio, Parachromis, Vieja, Thorychthys, and Rhamdia [11,27].
The analysis revealed a total of 113 fish species, equivalent to 22% of the epicontinental fish recorded in Mexico (~ 505). The found number is proposed as a stable indicator of the fish richness in the YP because an asymptote appears to be reached over time and with the considered sampled units in the completeness analysis. Among the fish, 12 species are endemic to the YP, classified into the Families Cyprinodontidae, Cichlidae, and Poeciliidae which inhabit superficial systems and are widely distributed. But the fish O. infernale and T. pearsei are strictly groundwater and its distribution is limited to eastern margin of the YP (Miocenic-Pliocenic area). Additionally, 5 of the endemics exclusively inhabit Chichancanab Lagoon, in the Municipality of Dziuché, México and are classified as Cyprinodon artifrons, C. esconditus, C. labiosus, C. maya and C. savium.
Since 2000, the careful observations of numerous individuals, and detailed taxonomic, ecological morphological and genetic studies [45] have allowed an increase in the known number of crustaceans in the world and in the analyzed region. The first regional records in the YP were made at the beginning of the 20th century; thus in the recent years, at least a fifth or sixth of the known species have been described and catalogued in the region.
The level of crustacean endemism is high: there are two endemic families (Tulumellidae and Anchialocarididae), the Caribbean endemics are represented by two genera (Balinella and Halicyclops), and several genera are endemics in the YP: Prehendocyclops, Creaseriella, Yucatalana, Creaseria, Mayaweckelia, Tuluweckelia, Tulumella, Anchialocaris, Yagerocaris, Mexicophria [46]; then, up of 50 crustacean species are endemics in the area.
The number of recorded crustacean species here, is not stable; thus, the probability of increasing the number of recorded crustacea species with unknown forms is high according to the completeness performed results. Based upon the accurate areas where inhabit endemic species, and because the highest species richness, the aquatic systems of central and eastern YP are critical to preserve the fish and crustaceans known and inventoried in the region, according to Raven [47].
Currently, several areas harbour endemic species, including the northern and eastern portions of the YP in the case of crustaceans, but in the central area of the YP in the case of fish. According to Alvarez et al. [46], the description of crustaceans is increasing in Mexico and in the analysed region. The groups with higher number of species recently described and catalogued were Ostracoda, Copepoda and Decapoda. In addition, some groups with revisited, or revised taxonomies have proposed rearranges (even new combinations) such as in the valid genera Biapertura [48], Cirolana, Metacirolana [35], Humphreysella or Macrothrix.
As proposed by Cohuo et al. [29] for crustaceans, the geological component is fundamental for explaining the level of endemism and specific richness. Then the crustacean distribution on the Yucatan Peninsula corresponds closely to the geological features of the coastal region. On the other hand, following the distribution of fish, the ecoregions proposed by Morrone [43] for other taxonomic groups were found to be homologous. This has already been proposed for the distribution patterns of fish, which correspond to ancient geological features and not to modern hydrography [27]. The distribution of fish appears to be more closed to surface relief, whereas that of crustaceans responds to both the surface and subterranean reliefs.
The Yucatan Peninsula is considered as a biogeographic province by Barrera, and latter recognized by Morrone [43]. With the exhaustive analyses carried out here, it was possible to verify that the levels of endemism of fish and crustacean species (10.2 and 21.9 %, respectively) are high and are probably equivalent to those found for mammals (17%) and reptiles (26%) previously recorded in the province.
In the more geologically recent region (northeast of YP), are located both: the Ox-Bel Há system, which is considered the longest flooded underground cave in the world, and the anchihaline systems of Cozumel Island [5]. As a result of the current analysis, it is now known that this region also hosts the greatest wealth of fish and crustaceans in the Yucatan Peninsula, as well as the largest number of endemic species (Table 2); according to Álvarez et al. [6], crustaceans are the organisms with the greatest diversity in this type of system. Additionally, crustacean’s fauna is shared between the northwest of the YP and the Cozumel island, such as the species Mastogodiaptomus ha, or the genera Xibalbanus.
Observing the crustacean’s distribution in the Peninsula, it can be determined that it corresponds closely to the geological features of the coastal region. This had already been proposed for the distribution patterns of fish, which correspond to most ancient geological features and not so much to modern hydrography [27].

5. Conclusions

The level of endemism of fish and crustaceans inhabiting of the aquatic systems surveyed here appears to be equivalent to the levels of endemism reported for mammals and reptiles of the biogeographic province of the Yucatan Peninsula. Approximately 2,600 records from 670 aquatic systems in the Yucatan Peninsula were analyzed, revealing 325 species: 113 fish and 212 crustaceans. Crustaceans are more evenly distributed than fish, with higher species richness in the eastern region. The study found that up of 60 species, are endemic, with endemism higher among crustaceans. Geological features heavily influence species distribution, especially for crustaceans. Fish richness declines from south to north. While species inventory is substantial, estimators suggest up to 5% more fish species and 20% more crustaceans remain to be discovered, particularly in understudied areas.

Supplementary Materials

The following supporting information can be downloaded at the website of this paper posted on Preprints.org.

Author Contributions

Conceptualization; methodology; formal analysis; investigation and writing-review and editing M.A.G.A.; A.C.M.; and E.S.M. Data curation, E.S.M. All authors have read and agreed to the published version of the manuscript. Ecological indicators and estimators of fish and crustacean diversity in the Yucatan Peninsula.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Data Availability Statement

Not applicable.

Acknowledgments

I thank Uhu Yam W. and Jaime S. who contributed with the preparation of an image and a fraction of the database. To Universidad Autónoma del estado de Quintana Roo for the support provided in infrastructure and materials to prepare the manuscript.

Conflicts of Interest

The authors declare no conflicts of interest.

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Figure 1. Yucatan Peninsula, records of fish or crustaceans.
Figure 1. Yucatan Peninsula, records of fish or crustaceans.
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Figure 2. Ranges of species richness of Crustacea (red) and Vertebrata (blue) for each site.
Figure 2. Ranges of species richness of Crustacea (red) and Vertebrata (blue) for each site.
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Figure 3. Species richness estimators: (a) crustaceans and (b) fish of the Yucatan Peninsula, Mexico.
Figure 3. Species richness estimators: (a) crustaceans and (b) fish of the Yucatan Peninsula, Mexico.
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Table 1. Taxa inventoried in cenotes, lagoons, springs and anchialine systems of YP.
Table 1. Taxa inventoried in cenotes, lagoons, springs and anchialine systems of YP.
Families Species
Phylum: Arthropoda
Subphylum: Crustacea
Class: Branchiopoda
Order: Diplostraca 7 58
Class: Remipedia
Order: Nectiopoda 1 3
Class: Maxillopoda
Subclass: Copepoda
Infraclass: Neocopepoda
Superorder: Gymnoplea
Order: Calanoida 7 19
Superorder: Podoplea
Order: Misophrioida 1 2
Order: Cyclopoida 2 42
Order: Harpacticoida 4 9
Class Ostracoda
Order Podocopida 5 34
Subclass: Myodocopa
Order: Halocyprida 2 2
Class Malacostraca
Subclass: Eumalacostraca
Superorder: Peracarida
Order: Thermosbaenacea 1 1
Order: Mysida 2 5
Order: Amphipoda 6 9
Order: Isopoda 1 9
Superorder: Eucarida
Order: Decapoda 9 20
Phylum: Chordata
Subphylum: Vertebrata
Class: Actinopterygii
Order: Anguiliformes 1 1
Order: Atheriniformes 3 11
Order: Batrachoidiformes 1 2
Order: Beloniformes 2 4
Order: Characiformes 2 7
Order Cichliformes 1 7
Order: Clupeiformes 3 6
Order: Cyprinodontiformes 4 24
Order: Elopiformes 1 1
Order: Gadiformes 1 1
Order: Perciformes 7 39
Order: Synbrachiformes 1 3
Order: Siluriformes 3 6
Class: Chondrichthyes
Order: Myliobatiformes 1 1
Number of Families and species of each order.
Table 2. Endemic, aquatic species inhabitants from Yucatan Peninsula.
Table 2. Endemic, aquatic species inhabitants from Yucatan Peninsula.
Family Species
Epacteriscidae ++ Balinella yucatanensis
Ridgewayiidae Exumella tsonot
Barbouriidae Barbouria yanesi
Xibalbanidae Xibalbanus tulumensis
Hyppolytidae Calliasmata nohochi
Diaptomidae Mastigodiaptomus siankanaensis, M. reidae, M. ha, M. maya
Stephidae Stephos fernandoi
Speleophriidae + Mexicophria cenoticola, Speleophria germanyanezi
Cyclopidae Acanthocyclops rebecae, A. smithae, ++ Halicyclops cenoticola, H. caneki, H. tetracanthus, H. venezualensis, + Prehendocyclops monchenkoi, P. boxshalli, P. abbreviatus, Mesocyclops yutsil, M. chaci, Diacyclops chakan, D. puuc
Candonidae Cypria petenensis, Cypridopsis niagranensis, Keysercypria xanabanica
Darwinulidae Alicenula yucatanensis
Thaumatocyprididae Humphreysella mexicana
Cyprididae Cypretta campechensis, C. maya, Cypria petenensis, Neocypridopsis yucatanensis, Strandesia intrépida
Ampithodea Cymadusa herrerae
Hadziidae Bahadzia bozanici, Bahadzia setodactylus
Cirolanidae + Creaseriella anops, Metacirolana mayana, Cirolana (Anopsilana) adriani, C. (A.) yucatana, C. yunca, C. bowmani, C. belizana, + Yucatalana robustispina
Palemonidae + Creaseria morleyi
Hadziidae +Mayaweckelia cenoticola, M. troglomorpha, M. yucatanensis, + Tuluweckelia cernua
Tulumellidae* + Tulumella unidens
Anchialocarididae* + Anchialocaris paulini
Procarididae Procaris mexicana
Alpheide + Yagerocaris cozumel, Triacanthoneus akumalensis
Spelephriidae + Mexicophria cenoticola
Mysidae Antromysis cenotensis
Amphipoda Hyalella maya, H. cenotensis
Agostocarididae Agostocaris bozanici, A. zabaletai
Stygiomysidae Stygiomysis cokei
Atyidae Typhlatya mitchelli, T. pearsei
Cyprinodontidae Floridichthys polyommus, Cyprinodon artifrons, C. esconditus, C. labiosus, C. maya, C. simus, C. savium, Garmanella pulchra
Synbranchidae Ophisternon infernale
Cichlidae Thorichthys meeki
Poeciliidae Poecilia velífera
Bythitidae Typhlasina pearsei
The asterisk indicates endemic families, the cross (before the name) represents the endemic genera from the Yucatan Peninsula, and the double cross represents the endemic genera from the Caribbean.
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