Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase (RdRp) Region and VP1 Gene in Human Norovirus Genotypes GII.P6-GII.6 and GII.P7-GII.6

Version 1 : Received: 2 May 2023 / Approved: 3 May 2023 / Online: 3 May 2023 (07:27:28 CEST)

A peer-reviewed article of this Preprint also exists.

Takahashi, T.; Kimura, R.; Shirai, T.; Sada, M.; Sugai, T.; Murakami, K.; Harada, K.; Ito, K.; Matsushima, Y.; Mizukoshi, F.; Okayama, K.; Hayashi, Y.; Kondo, M.; Kageyama, T.; Suzuki, Y.; Ishii, H.; Ryo, A.; Katayama, K.; Fujita, K.; Kimura, H. Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase (RdRp) Region and VP1 Gene in Human Norovirus Genotypes GII.P6-GII.6 and GII.P7-GII.6. Viruses 2023, 15, 1497. Takahashi, T.; Kimura, R.; Shirai, T.; Sada, M.; Sugai, T.; Murakami, K.; Harada, K.; Ito, K.; Matsushima, Y.; Mizukoshi, F.; Okayama, K.; Hayashi, Y.; Kondo, M.; Kageyama, T.; Suzuki, Y.; Ishii, H.; Ryo, A.; Katayama, K.; Fujita, K.; Kimura, H. Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase (RdRp) Region and VP1 Gene in Human Norovirus Genotypes GII.P6-GII.6 and GII.P7-GII.6. Viruses 2023, 15, 1497.

Abstract

To understand the evolution of the human norovirus GII.P6-GII.6 and GII.P7-GII.6 strains, we analyzed both the RdRp region and VP1 gene in globally collected strains using authentic bioinformatics technologies. A common ancestor of the P6- and P7-type RdRp region emerged approximately 50 years ago and a common ancestor of the P6- and P7-type VP1 gene emerged approximately 110 years ago. Subsequently, the RdRp region and VP1 gene evolved. Moreover, the evolutionary rates were significantly faster for the P6-type RdRp region and VP1 gene than the P7-type RdRp region and VP1 genes. Large genetic divergence was observed in the P7-type RdRp region and VP1 gene compared with the P6-type RdRp region and VP1 gene. The phylodynamics of the RdRp region and VP1 gene fluctuated after the year 2000. Positive selection sites in VP1 proteins were located in the antigenicity-related protruding 2 domain, and these sites overlapped with conformational epitopes. These results suggest that the GII.6 VP1 gene and VP1 proteins evolved uniquely due to recombination between the P6- and P7-type RdRp regions in the HuNoV GII.P6-GII.6 and GII.P7-GII.6 virus strains.

Keywords

Human norovirus; RNA-dependent RNA polymerase (RdRp) region; VP1 gene; epitope mapping; molecular evolution

Subject

Biology and Life Sciences, Immunology and Microbiology

Comments (0)

We encourage comments and feedback from a broad range of readers. See criteria for comments and our Diversity statement.

Leave a public comment
Send a private comment to the author(s)
* All users must log in before leaving a comment
Views 0
Downloads 0
Comments 0
Metrics 0


×
Alerts
Notify me about updates to this article or when a peer-reviewed version is published.
We use cookies on our website to ensure you get the best experience.
Read more about our cookies here.