This Thesis is concerned with one of the most promising probes to constrain the "Dark Universe", and, particularly, the dark matter distribution. Based on MICE cosmological simulation, and the all-sky convergence maps generated by Fosalba et al. [58], we perform a mass calibration of the dark matter halos there contained up to z=1. In order to do that, we analyse the average halo density proÖles of all the halos with masses ranging from 5E13 to 3.75E14 M/h , divided into four mass bins and three redshift bins. Through this analysis we address two main issues: the relatively low mass resolution of the simulation (mp=2.34E11M/h) and the relatively high softening length (lsoft=50Kpc/h). We do that by using a two-step procedure. First, we simulate analytical pure NFW density proÖles (with di§erent mass resolutions) using two input values: the virial radii of MICE halos and the expected concentrations, according to the Öxed mass-concentration relation from Oguri and Hamana [130]. Second, we model the e§ect of the softening length with a Gaussian Ölter, smoothing the halo core. The results show that MICE halos are, in average, NFW halos. Best-fit NFW radii are in very good agreement with the average radii of our samples, overestimating the data by ~1%, but best-fit NFW concentrations are in average 50% lower than the expected values. It is possible to account for part of this deviation by distinguishing between relaxed and unrelaxed halos, finding that, depending on the degree of relaxedness, the improvement can be as high as 30%. We also find that the analytical NFW halos simulated with MICE mass resolution have an overall concentration 40% lower than the input concentration, in the case of 3D proÖles, and 25% lower in that of the projected profiles. The Gaussian-smoothed NFW profile is a good approximation for our projected halos. Additionally, we analyse the morphology of the halos, characterizing their triaxiality at R200 and calculating their orientation with respect to the line-of-sight (LOS). MICE halos tend to adopt a more prolate morphology, as might be expected from a CDM simulation (Shaw et al. [159]), and the percentage of prolate halos grows as their mass grows. The mass resolution is, nonetheless, not good enough to draw conclusive inferences from the shape analysis, but it allows us to discern a trend and estimate the e§ect of halo shape and orientation on the weak lensing masses. Finally, we use the all-sky convergence maps to study the scatter in mass measurements of MICE halos. We determine the intrinsic scatter in the recovered masses by assuming the smoothed NFW profile as the 'true' profile, and creating two new convergence maps from different mass cuts. We estimate also the scatter due to the correlated structure by studying the angles between the major axes of the halos and the LOS, and also that due to projection e§ects (i.e. all the dark matter between observer and source). We Önd an irreducible scatter (intrinsic) of 10-14%, a scatter around a 30% of the intrinsic one due to correlated structure, and a scatter around 40-70% of the intrinsic one due to projection e§ects. The size of our halo sample allows us to improve the characterization of the cosmic noise, of great importance for present and future surveys.

The Baculoviridae, a family of insect-specific large DNA viruses, is widely used in both biotechnology and biological control. Its applied value stems from millions of years of evolution influenced by interactions with their hosts and the environment. To understand how ecological interactions, have shaped baculovirus diversification, we reconstructed a robust molecular phylogeny using 217 complete genomes and ~580 isolates for which at least one of four lepidopteran core genes was available. We then used a phylogenetic-concept-based approach (mPTP) to delimit 165 baculovirus species, including 38 species derived from new genetic data. Phylogenetic optimization of ecological characters revealed a general pattern of host conservatism punctuated by occasional shifts between closely related hosts and major shifts between lepidopteran superfamilies. Moreover, we found significant phylogenetic conservatism between baculoviruses and the type of plant growth (woody or herbaceous) associated with their insect hosts. In addition, we found that colonization of new ecological niches sometimes led to viral radiation. These macroevolutionary patterns show that besides selection during the infection process, baculovirus diversification was influenced by tritrophic interactions, explained by their persistence on plants and interactions in the midgut during horizontal transmission. This complete eco-evolutionary framework highlights the potential innovations that could still be harnessed from the diversity of baculoviruses.

The heavy-metal-associated (HMA) proteins are a class of PB1-Type ATPases related to the intracellular transport and detoxification of metals. However, due to a lack of information regarding the HMA gene family in the Cucurbitaceae family, a comprehensive genome-wide analysis of the HMA family was performed in ten Cucurbitaceae species: Citrullus amarus, Citrullus colocynthis, Citrullus lanatus, Citrullus mucosospermus, Cucumis melo, Cucumis sativus, Cucurbita maxima, Cucurbita moschata, Cucurbita pepo, and Legenaria siceraria. We identified 103 Cucurbit HMA proteins with various members, ranging from 8 (Legenaria siceraria) to 14 (Cucurbita pepo) across species. The phylogenetic and structural analysis confirmed that the Cucurbitaceae HMA protein family could be further classified into two major clades: Zn/Co/Cd/Pb and Cu/Ag. GO annotation-based subcellular localization analysis predicted that all HMA gene family members were localized on membranes. Moreover, the analysis of conserved motifs and gene structure (intron/exon) revealed the functional divergence between clades. Interspecies microsynteny analysis demonstrated that maximum orthologous genes were found between species of the Citrullus genera. Finally, nine candidates HMA genes were selected, and their expression analysis was carried out via qRT-PCR in root, leaf, flower, and fruit tissues of C. pepo under arsenic stress. The expression pattern of the CpeHMA genes showed a distinct pattern of expression in root and shoot tissues, with a remarkable expression of CpeHMA6 and CpeHMA3 genes from the Cu/Ag clade. Overall, this study provides insights into the functional analysis of the HMA gene family in Cucurbitaceae species and lays down the basic knowledge to explore the role and mechanism of the HMA gene family to cope with arsenic stress conditions.

Fruits, vegetables, and spices are natural sources of bioactive phytochemicals such as polyphenols, carotenoids, flavonoids, curcuminoids, terpenoids, and capsaicinoids, possessing multiple health benefits and relatively low toxicity. These compounds found in the diet play a central role in organism development and fitness. Given the complexity of the whole-body response to dietary changes, invertebrate model organisms can serve as valuable tools to examine the interplay between genes, signaling pathways, and metabolism. Drosophila melanogaster, an invertebrate model with its extensively studied genome, has more than 70% gene homology to humans and has been used as a model system in biological studies for a long time. The notable advantages of Drosophila as a model system, such as their low maintenance cost, high reproductive rate, short generation time and lifespan, and the high similarity of metabolic pathways between Drosophila and mammals, have encouraged the use of Drosophila in the context of screening and evaluating the impact of phytochemicals present in the diet. In this chapter, we summarize and review the benefits of Drosophila as a model system for use in the study of phytochemical ingestion and describe the previously reported effects of phytochemical consumption in Drosophila.