REVIEW
|
doi:10.20944/preprints202104.0244.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Staphylococcus aureus; MRSA; genome-scale metabolic models; model-driven discovery; strain-specific models
Online: 8 April 2021 (14:25:31 CEST)
ARTICLE
|
doi:10.20944/preprints202010.0386.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
reproduction number; disease-free equilibrium; co-existence equilibrium; Yersinia; gastroenteritis
Online: 19 October 2020 (14:40:09 CEST)
ARTICLE
|
doi:10.20944/preprints202104.0788.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
SARS-CoV-2; COVID-19; Flux Balance Analysis (FBA); Genome-Scale Metabolic Models; Target Identification; Reaction Knock-Out; Structural Proteins; Purine Metabolism; Pyrimidine Metabolism; B.1.1.7; B.1.351
Online: 30 April 2021 (15:14:06 CEST)
ARTICLE
|
doi:10.20944/preprints202302.0317.v1
Subject:
Computer Science And Mathematics,
Computer Science
Keywords:
SBOannotator; ontologies; SBO terms; Python; software; automated assignment; computational modeling; systems biology
Online: 20 February 2023 (03:57:56 CET)
ARTICLE
|
doi:10.20944/preprints202203.0290.v3
Subject:
Biology And Life Sciences,
Biology And Biotechnology
Keywords:
host-virus interactions; tissue-specific model; COVID-19; SARS-CoV-2; antiviral targets; flux balance analysis; flux variability analysis; reaction knockout; host-derived enforcement; metabolic modeling; virus mutations; software engineering; Python
Online: 17 January 2023 (01:50:23 CET)
TECHNICAL NOTE
|
doi:10.20944/preprints202012.0296.v1
Subject:
Computer Science And Mathematics,
Algebra And Number Theory
Keywords:
Systems Biology; Numerical Solver; Java™; API Library; SBML; SED-ML; OMEX; Constraint-Based Modeling; Stochastic Simulation; Ordinary Differential Equation Systems
Online: 11 December 2020 (19:41:58 CET)
ARTICLE
|
doi:10.20944/preprints202108.0259.v1
Subject:
Computer Science And Mathematics,
Software
Keywords:
SBML; kinetic models; time-course simulation; steady-state simulation; parameter estimation; model calibration; software; web application
Online: 11 August 2021 (12:19:38 CEST)
ARTICLE
|
doi:10.20944/preprints202210.0223.v3
Subject:
Biology And Life Sciences,
Virology
Keywords:
Drug discovery; Systems biology; SARS-CoV-2; Dengue; Influenza A; RSV; cell viability analysis; antivirals; in vitro validation; in vivo validation
Online: 22 March 2024 (16:46:59 CET)