Submitted:
09 June 2026
Posted:
11 June 2026
You are already at the latest version
Abstract
Integrated proteomics and untargeted metabolomics were employed to systematically characterize molecular differences between high-quality (HQ) and low-quality (PQ) eggs of Acipenser schrenckii. Among 1,636 proteins and 1,102 metabolites, 220 differentially expressed proteins (DEPs) and 365 differential metabolites (DMs) were identified. Functional enrichment demonstrated that HQ eggs were predominantly enriched in pathways associated with amino acid biosynthesis, glycolysis/tricarboxylic acid cycle, nucleotide metabolism, and mRNA surveillance, which collectively supported material accumulation, energy supply, and embryonic developmental competence. In contrast, PQ eggs were mainly enriched in oxidative phosphorylation, mitochondrial stress response, arachidonic acid metabolism, and immune and inflammatory signaling pathways, indicating severe lipid metabolic disorders and excessive oxidative stress. Spearman correlation analysis identified L-pyroglutamic acid and ascorbic acid as core metabolic hubs responsible for maintaining high egg quality, whereas natamycin and tetrahydrocorticosterone served as characteristic metabolic biomarkers of deteriorated eggs. Key protein hubs closely associated with egg quality included GAPDH, glutathione S-transferase, and CYP450 2E1. Collectively, this study elucidates distinct molecular regulatory patterns and establishes a reliable multi-omics biomarker for evaluating sturgeon egg quality formation and deterioration.
Keywords:
1. Introduction
2. Materials and Methods
2.1. Experimental Samples
2.2. Label-Free Quantitative Proteomic Analysis
2.2.1. Protein Extraction and Digestion
2.2.2. LC-MS/MS Analysis
2.3. Untargeted Metabolomic Analysis (LC-MS/MS)
2.3.1. Metabolite Extraction
2.3.2. UHPLC-MS/MS Analysis
2.4. Multi-Omics Integration Analysis
3. Results
3.1. LC‒MS/MS Identification of High-Quality and Low-Quality Egg Proteins
3.2. Comparison of HQ and PQ Egg Proteins
3.3. Untargeted Metabolomic Profiling of HQ and PQ Eggs
3.4. Combined Analysis Proteomics and Metabolomics Data
4. Discussion
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Name | Total spectra | Matched spectra | Peptides | Identified proteins |
| ALL | 989,019 | 69,206 | 7955 | 1636 |
| Pathway | Total | Expected | Hits | FDR | Impact | |
| Arginine biosynthesis | 56 | 0.407 | 7 | 1.10e-05 | 0.410 | |
| HQ | Alanine, aspartate and glutamate metabolism | 76 | 0.552 | 8 | 1.02e-05 | 0.298 |
| mRNA surveillance pathway | 99 | 0.720 | 5 | 0.042 | 0.034 | |
| Tight junction | 99 | 1.920 | 41 | 1.88e-47 | 0.083 | |
| Cell adhesion molecules | 250 | 1.436 | 41 | 6.12e-53 | 0.019 | |
| PQ | Glycerolipid metabolism | 112 | 0.860 | 1 | 1 | 0.123 |
| Virion - Hepatitis viruses | 75 | 0.576 | 41 | 1.06e-72 | 0 |
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