Submitted:
30 April 2026
Posted:
05 May 2026
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Association of microRNA Expression in the Development and Progression of Cervical Cancer
3. The Regulation of miRNA Expression by High-Risk HPV Viral Oncoproteins
4. MicroRNAs Associated with Signaling Pathways in HPV Infection
5. Clinical Significance of Deregulation of microRNA Expression in Cervical Cancer
6. Computational Strategies for the Identification of Differentially Expressed microRNAs in Cervical Cancer
6.1. Computational Approaches for the Identification of de-miRNAs
6.1.1. Differential Expression Analysis
6.1.2. Integration of Multi-Omics Data
6.1.3. Application of Machine Learning Algorithms
7. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| AKT | Protein kinase B |
| AMER1 | APC membrane recruitment protein 1 |
| ANNs | Artificial Neural Networks |
| AXIN2 | Axis Inhibition Protein 2 |
| CC | Cervical Cancer |
| CDC42 | Cell division control protein 42 homolog |
| CIN | Cervical intraepithelial neoplasia |
| c-MET | C-Mesenchymal-Epithelial Transition Factor |
| CTNNB1 | Catenin beta 1 |
| DE-miRNAs | Differentially expressed miRNAs |
| DGCR8 | DiGeorge Critical Region 8 |
| DGE | Differential gene expression |
| DISC | Death-Inducing Signaling Complex |
| DLL1 | Delta-like notch 1 ligand |
| EGF | Epidermal Growth Factor |
| EGFR | Epidermal Growth Factor Receptor |
| EMT | Epithelial-mesenchymal transition |
| ERK | Extracellular signal-regulated kinase |
| FAK | Focal Adhesion Kinase |
| GEO | Gene Expression Omnibus |
| GLI3 | GLI family zinc finger 3 |
| HIF-1α | Hypoxia-Inducible Factor 1-alpha |
| HPV | Human Papillomavirus |
| hr-HPV | High-risk Human Papillomavirus |
| IL-6 | Interleukin-6 |
| KDM5B | Lysine demethylase 5B |
| lr-HPV | Low-risk Human Papillomavirus |
| MAPK1 | Mitogen-Activated Protein Kinase 1 |
| MHC I | Major Histocompatibility Complex class I |
| miRNAs | MicroRNAs |
| ML | Machine learning |
| MMP2 | Matrix Metalloproteinase-2 |
| MMP9 | Matrix Metalloproteinase-9 |
| MST2 | Mammalian sterile 20-like kinase 2 |
| NRP2 | Neuropilin 2 |
| OncomiRs | Oncogenic miRNAs |
| P18INK4c | p18 inhibitor of cyclin-dependent kinase 4c |
| PD-L1 | Programmed Death-Ligand 1 |
| PI3K | Phosphoinositide-3 kinase |
| PIK3CD | Phosphoinositide-3 kinase delta |
| PLK2 | Polo-like kinase2 |
| pRb | Retinoblastoma protein |
| PTEN | Phosphatase and Tensin Homolog |
| RHOA | Ras homolog gene family member A |
| RNA | Ribonucleic acid |
| RNA-seq | RNA sequencing |
| SP1 | Specificity Protein 1 |
| SVM | Random Forest and Support Vector Machines |
| TCGA | The Cancer Genome Atlas |
| TRIM3 | Tripartite motif-containing 3 |
| ts-miRs | Tumor-suppressor genes |
| UBE2I | Ubiquitin-conjugating enzyme E2I |
| uPA | Urokinase-type plasminogen activator |
| WNT10A | Wnt family member 10a |
| WTX | Wilms tumor gene on the X chromosome |
| ZEB1 | Zinc finger E-box binding homeobox 1 |
| ZNF813 | Zinc finger protein |
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| Protein | miRNAs | Expression | Target | Cell Process | Ref. |
| E5 | miR-146a | Up | ZNF813 | Cell adhesion and cell cycle | [37] |
| E5 | miR-203 | Down | p63 | Cell junction, cell migration, and cell motility | [37] |
| E5 | miR-324-5p | Down | CDH2, CTNNB1 | Transendothelial migration | [37] |
| E6 | miR-409-3p | Down | PI3K/AKT | Proliferation and migration | [38] |
| E6 | miR-143 | Up | HIF-1a, PD-L1 | Immune system | [39] |
| E7 | miR-27b | Up | PLK2 | Cell proliferation, invasion and apoptosis | [40] |
| E7 | miR-21 | Up | No identified | Cell growth, proliferation and invasion | [41] |
| E6/E7 | miR-17-5p, miR-186-5p, miR-378a-3p, miR-378f, miR-629-5p, and miR-7-5p (intracellular) | Down | No identified | Cell proliferation and apoptosis | [42] |
| E6/E7 | miR-143-3p, miR-23a-3p, miR-23b-3p, and miR-27b-3p (intracellular) | Up | No identified | Cell proliferation and apoptosis | [42] |
| E6/E7 | let-7d-5p, miR-20a-5p, miR-378a-3p, miR-423-3p, miR-7-5p, miR-92a-3p (exosomal) | Down | p21 | Cell proliferation and apoptosis | [42] |
| E6/E7 | miR-21-5p (exosomal) | Up | p21 | Cell proliferation and apoptosis | [42] |
| E6/E7 | miR-142-5p | Down | PD-L1 | Immune system | [43] |
| E6/E7 | miR-331-3p | Up | NRP2 | Cell proliferation, cell cycle, apoptosis | [44] |
| E6/E7 | miR-199b-5p and miR-190a-5p | Down | No identified | Cell proliferation | [45] |
| E5/E6/E7 | miR-148a-3p | Down | No identified | Cell proliferation | [45] |
| This table summarizes the role of HPV oncoproteins (E5, E6, and E7) in regulating microRNAs (miRNAs) involved in cervical cancer progression. The "Protein" column lists the HPV oncoproteins responsible for miRNA regulation. The "miRNAs" column shows the specific miRNAs affected by these oncoproteins. The "Regulation" column indicates whether the miRNA is upregulated (increased) or downregulated (decreased). The "Target" column identifies the key molecular targets of the regulated miRNAs. The "Cell Process" column describes the biological processes influenced, such as cell proliferation, migration, apoptosis, and immune evasion. The "Ref." column references the studies that reported these interactions. | |||||
| miRNA | Target | Signaling pathways | Hallmarks of cancer | Ref. | ||||
| miR-34a | p18Ink4c | E6/p53 | Senescent cells, evading growth suppressors and resisting cell death | [51,52] | ||||
| miR-23b | uPA | E6/p53 | Activating invasion & metastasis | [53] | ||||
| miR-375 | E6 and E7 | E6/p53 and E7/pRb | senescent cells and resisting cell death | [54] | ||||
| miR-129-5p | SP1 | E6/p53 and E7/pRb | Sustaining proliferative signaling | [56] | ||||
| miR-92 | PTEN | PI3K/AKT | Sustaining proliferative signaling, activating invasion & metastasis and resisting cell death | [57] | ||||
| Cluster miR-302 and miR-367 | Cyclin D1, AKT1, and p27 | PI3K/AKT | Sustaining proliferative signaling | [58] | ||||
| miR-196a | FOXO1 and p27 | PI3K/AKT | Sustaining proliferative signaling | [59] | ||||
| miR-125b | PIK3CD | PI3K/AKT/mTOR | Sustaining proliferative signaling and resisting cell death | [60] | ||||
| miR-133b | MST2, CDC42 and RHOA | AKT/ERK | Sustaining proliferative signaling | [61] | ||||
| miR-218 | RICTOR | AKT/mTOR | Sustaining proliferative signaling and resisting cell death | [62] | ||||
| miR-23b-3p | c-Met | FAK/AKT/ERK | Sustaining proliferative signaling and activating invasion & metastasis | [63] | ||||
| miR-21 | PTEN | FAK/AKT/ERK | Sustaining proliferative signaling and activating invasion & metastasis | [64] | ||||
| miR-7 | FAK | FAK/AKT/ERK | Sustaining proliferative signaling and activating invasion & metastasis | [65] | ||||
| miR-497-5p | MAPK1 | MAPK | Sustaining proliferative signaling and activating invasion & metastasis | [66] | ||||
| miR-454-3p | TRIM3 | MAPK | Evading growth suppressors and resisting cell death | [67] | ||||
| miR-135a | SIAH1 | Wnt/β-catenin | Activating invasion & metastasis and sustaining proliferative signaling | [68] | ||||
| miR-205-5p | AXIN2 | Wnt/β-catenin | Resisting cell death and sustaining proliferative signaling | [69] | ||||
| miR-146a | CTNNB1 | Wnt | Activating invasion & metastasis and sustaining proliferative signaling | [70] | ||||
| miR-4524b-5p | WTX | Wnt/β-catenin | Activating invasion & metastasis | [71] | ||||
| miR-424-5p | KDM5B | Notch | Sustaining proliferative signaling and resisting cell death | [72] | ||||
| miR-34a | Notch1 and Jagged1 | Notch | Activating invasion & metastasis | [73] | ||||
| miR-628-5p | Jagged1 | Notch | Sustaining proliferative signaling and resisting cell death | [74] | ||||
| miR-130a-3p | DLL1 e WNT10A | Notch/Wnt | Activating invasion & metastasis and sustaining proliferative signaling | [75] | ||||
| miR-506 | Gli3 | Hedgehog | Sustaining proliferative signaling, evading growth suppressors and resisting cell death | [76] | ||||
| miR-9 | IL-6 | JAK/STAT | Sustaining proliferative signaling, activating invasion & metastasis and unlocking phenotypic plasticity | [77] | ||||
| miR-126 | MMP2, MMP9 and ZEB1 | JAK/STAT | Sustaining proliferative signaling and activating invasion & metastasis | [78] | ||||
| miR-211 | ZEB1 | JAK/STAT | Sustaining proliferative signaling and activating invasion & metastasis | [79] | ||||
| miR-875-5p | EGFR | EGFR | Sustaining proliferative signaling and activating invasion & metastasis | [80] | ||||
| miR-155 | EGF | EGFR | Sustaining proliferative signaling, activating invasion & metastasis | [81] | ||||
| miRNAs | Expression | Outcome | Ref. |
| miR-34a | Downregulated | Shorter overall survival | [84] |
| miR-23b | Downregulated | Shorter overall survival | [87] |
| miR-125b | Downregulated | Shorter overall survival | [85] |
| miR-133b | Upregulated | Shorter overall survival | [88] |
| miR-218 | Downregulated | Shorter overall survival | [89] |
| miR-196a | Upregulated | Shorter overall survival | [59] |
| miR-497-5p | Downregulated | Poor survival | [90] |
| miR-21 | Upregulated | Shorter overall survival | [91] |
| miR-205-5p | Upregulated | Poor survival | [69] |
| miR-146a | Downregulated | Shorter overall survival | [91] |
| miR-424-5p | Downregulated | Poor prognosis | [92] |
| miR-9 | Upregulated | Shorter overall survival | [86] |
| miR-126 | Downregulated | Shorter overall survival | [93] |
| miR-875-5p | Downregulated | Shorter overall survival | [80] |
| miR-155 | Downregulated | Shorter overall survival | [91] |
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