Chronic stress, circadian disruption, sedentary behavior, industrialized diets and disturbances in the gut microbiome have created an evolutionary mismatch between ancestral physiology and the modern environment. Generation X (Gen X) women (born between 1965–1980) are the first cohort to enter midlife having lived their entire adult lives within these conditions while also carrying distinct cohort-specific factors shaped by major economic and cultural transitions. The interaction of evolutionary mismatch and Gen X pressures destabilizes hormonal regulation, increases allostatic load and impairs mitochondrial function, contributing to fatigue, metabolic inflexibility and cognitive dysfunction during perimenopause and menopause, with implications for postmenopausal health and long-term disease risk. Women with polycystic ovary syndrome have reduced insulin sensitivity and a heightened proinflammatory response that makes them more susceptible to Gen X evolutionary mismatch pressures. This paper synthesizes evidence from evolutionary biology, endocrinology, neuroscience and lifestyle medicine to present an integrated model explaining the mechanisms driving midlife symptomatology in Gen X women. The model places midlife dysfunction within an evolutionary mismatch context, where modern environmental exposures and cohort-specific demands interact with hormonal, immune and metabolic changes to drive convergent pathophysiological mechanisms. A tiered recovery framework is proposed, targeting allostatic load reduction, circadian realignment, restoration of metabolic flexibility, and integration of mitochondrial, musculoskeletal and gut–brain–endocrine signaling systems.