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Use of Artificial Intelligence Model Associated with Masson’s Trichrome Staining as a Predictor of Muscle Invasion in Bladder Cancer

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21 December 2025

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22 December 2025

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Abstract
Background: Bladder cancer (BC) is the most common malignancy of the urinary tract. Approximately 75% of cases are non–muscle-invasive BC (NMIBC), while muscle-invasive BC (MIBC) and advanced tumors account for most cancer-specific mortality. Accurate assessment of tumor invasion is essential, as staging variability may lead to inappropriate treatments. Tumor invasion involves several mechanisms including extracellular matrix (ECM) remodeling mediated by metalloproteinases, angiogenesis, and cell adhesions. Masson’s trichrome staining (MTS) provides relevant information on ECM composition. This study evaluated the application of machine learning to MTS-stained bladder biopsies to predict muscle invasion. Methods: A retrospective analysis of bladder biopsies images obtained from transurethral resections and cystectomies (2022–2024). A total of 702 histological images were analyzed. A convolutional neural network (CNN) was trained to classify tumors as MIBC or NMIBC and model outputs were correlated with clinical variables. Results: The CNN achieved an accuracy of 95.2% in the training set and 90.1% in validation. Model-derived probabilities were significantly associated with tumor grade, lesion size, and muscle invasion. Logistic regression demonstrated a strong association with invasive disease (OR = 0.07, p = 0.017). Conclusion: CNN-based analysis of MTS-stained bladder biopsies images enables accurate prediction of muscle invasion, with potential to improve diagnostic precision.
Keywords: 
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1. Introduction

Bladder cancer (BC) is the 7th most commonly diagnosed cancer in males, with 600,000 patients being diagnosed in 2020 with BC worldwide [1]. In non muscle invasive BC (NMIBC), approximately 75% of patients present with disease confined to the mucosa (stage Ta), carcinoma in situ (CIS) or submucosa (stage T1), although most of the cancer-specific mortality is associated with T2–T4 tumors, classified as muscle invasive BC (MIBC). NMIBC can progress to muscle invasive or metastatic disease in approximately 15% of patients, however high-grade NMIBC cases can reach a 45% rate of MI progression within 5 years, associated with a 50% 5-year survival rate, despite aggressive treatments such as radical cystectomy (RC) [1,2,3,4,5]. Nowadays, further approaches are needed to not only refine risk stratification of muscle invasion but also to guide personalized therapeutic strategies according to it, and therefore improve overall outcomes for patients with BC, addressing a critical gap in uro-oncological care.
The standard method used to determine stage of neoplasia in BC is transurethral resection of the bladder tumour (TURBT); this procedure provides treatment for patients with NMIBC and staging information for those with MIBC through histopathological biopsy analyses. However, the inter-observer difference between pathologists can vary between 27% and 74% [6,7,8,9,10] In BC, staging of the primary lesion by TURBT is fundamental to a rational therapeutic approach; the absence of detrusor muscle and high risk tumors in the TURBT derived specimen is associated with a high risk of residual disease, early recurrence and tumour understaging. Therefore, in these cases, a second TURBT should be performed to achieve a precise diagnosis, exposing the patient to a new invasive procedure and its associated complications [11,12,13]. Although much work has been done in the areas of detecting early cancer, and only few studies have focused on accurately identifying muscle invasion in BC cases [14,15,16,17]. The search for new methods that could improve the detection of MIBC in patients is necessary to improve the concordance between pathologists, diminish the number of second resections needed that could lead to fewer complications, better quality of life, and less economic burden.
Muscle invasion requires more aggressive therapeutic approaches as it involves a complex interaction between tumor cells and their microenvironment for overcoming surrounding matrix and tissue barriers, colonizing adjacent structures through migration. In BC, this phenomenon represents not only a morphological change, but also a molecular reprogramming orchestrated by a network of biological signals that includes modifications in gene expression, activation of oncogenic signaling pathways, and remodeling of the extracellular microenvironment. Regarding the tumor microenvironment, the extracellular matrix (ECM) is a dynamic and highly structured component that modulates not only tissue support, but also cancer cell behavior, influencing invasion, differentiation, and angiogenesis [18,19]. However, tumors can also often induce changes in the ECM of the connective tissue, including alterations in collagen density, cross-linking, and degradation of it. ECM remodeling, often promoted by the secretion of matrix metalloproteinases (MMPs) by tumor and stromal cells, facilitates cell migration by generating pathways through which tumor cells can invade surrounding tissues [20,21]. The interaction between tumor cells and an unstructured ECM can favor muscle invasion, a critical marker of cancer progression and prognosis [22]. The study of the state of the ECM in this context could allow us to evaluate its contribution to tumor migration and identify patterns that help in detecting muscle invasion.
Imaging techniques and molecular assays targeting these ECM changes can provide valuable insight into the tumor microenvironment’s dynamics, aiding in the early detection of muscle invasion. MTS is a well-known histological technique widely used to evaluate the composition and organization of the ECM in tissues, due to its ability to differentiate collagen, muscle and cellular cytoplasm [23,24]. In the context of BC, this stain could offer significant diagnostic value by allowing clear visualization of the tumor cells and their environment, including potential muscle invasion associated with the ECM state. The ability to accurately identify the presence of unstructured or reorganized collagen fibers and changes in the integrity of the muscularis propria, could be useful in determining patterns associated with cell migration, facilitating the correlation between histological findings and underlying oncological mechanisms. However, traditional diagnostic methods including histopathological evaluation using staining techniques can be limited by subjectivity and inter-observer variability [6,7,8,9,10].
Nowadays, Machine Learning (ML) is revolutionizing the field of medical diagnostics by enabling the analysis of complex datasets with unprecedented accuracy and efficiency [25]. In the context of diagnosing MIBC, ML could offer a powerful tool to complement traditional histopathological techniques through algorithms capable of detecting patterns and features within biopsy images, enhancing diagnostic precision and reducing inter-observer variability inherent to manual assessments. The application of ML to analyze bladder biopsies stained with MTS represents a transformative step towards integrating computational intelligence with clinical pathology, with the potential to significantly improve patient diagnosis and outcomes.
By integrating ML into the analysis of MTS of biopsy specimens, this study aims to enhance diagnostic precision of muscle invasion in BC, enabling a more standardized and reproducible assessment of tumor characteristics, improving the patient’s decision making process.

2. Results

A total of 32 patients with BC were included, 702 images were taken and submitted to the artificial intelligence model (Figure 2), of which 22 were NMIBC and 10 MIBC: 12 were Ta, 11 T1, 7 T2 and 2 T3, mean age was 73 years for NMIBC, while for MIBC it was 66.3, the probability of detecting muscle invasion was 0.487 and 0.998 for NMIBC and MIBC images, respectively (p=0.001) (Table 1).
Our model achieved an accuracy of 95% for the training process and up to 90.1% in the validation process. The probability generated by the model was correlated with tumour grade, tumour size, tumour weight, which had a clinically significant association (p= 0.005, 0.017 and 0.01, respectively), (Table 2). In addition, sensitivity and specificity were calculated for diagnosis by AUC of ROC Curves obtaining a sensitivity of 90%, specificity of 91%, a positive predictive value of 82% and a negative predictive value of 95% (Table 3).

3. Discussion

In BC, artificial intelligence (AI) has consolidated its role as a supportive tool at various levels of the diagnostic and therapeutic process, optimizing procedures such as cystoscopy, urinary cytology, and the prediction of clinical outcomes. AI has been utilized for the automated detection of tumor lesions in endoscopic images, increasing diagnostic sensitivity compared to conventional evaluation [15]. Furthermore, models capable of predicting tumor recurrence and progression have been developed through the analysis of clinical and imaging data, giving strength to risk stratification [15]. Also the use of AI in bladder biopsies has been investigated to improve the accuracy of the diagnosis and decrease the inter-observer variability.
The role of ECM remodeling and connective tissue status in tumor progression and muscle invasion in BC is still under investigation. Through the use of MTS, we demonstrated its utility not only in detecting muscle invasion but also in providing insights into the structural alterations of the ECM associated with tumor cell invasion. These observations underscore the interplay between tumor cells and their microenvironment, where ECM degradation and reorganization could facilitate invasive behavior and therefore serve as an indicator of muscle invasion (Figure 3). Our work showed the ability of the MTS technique to distinguish key histological features of the ECM in tumor biopsies, which in addition to ML algorithms makes it a valuable tool in clinical diagnostics, particularly in identifying muscle invasion. Our model achieved an accuracy in the validation process of 90.1%, which reached 95.2% in the training to differentiate NMIBC from MIBC, reaching significant differences in tumour grade, tumour weight and tumour size.
AI-driven image analysis has the potential to significantly reduce variability in cancer muscle invasion diagnosis and improve patient outcomes in oncology. By the support of advanced algorithms, AI enhances the precision of diagnostic imaging, which is crucial for accurately assessing muscle invasiveness in cancers such as BC [26]. AI algorithms can achieve comparable or even superior performance to human experts in detecting and classifying cancer, thereby reducing diagnostic variability [27,28]. In this context, inter-observer variability between pathologists in the MI varies between 27% and up to 74% depending on the studies, of which up to 28% of the cases even may require some change in their treatment [6,7,8,9,10] These differences in the pathological interpretation of TURBT specimens include the presence of technical artefacts, distinction between muscularis mucosae and muscularis propria, absence of muscularis propria, distinction between stromal desmoplasia and muscular invasion, tangential sectioning and lack of spatial orientation caused by random inclusion of bladder tissue, which leads to inter-observer variability, but also to risk of under- or overstaging and may lead to inappropriate therapeutic decisions [7,8,9].
For the management of NMIBC, TURBT is a procedure with low associated morbidity and mortality. Although life threatening events are rare, complications include tumor cell dissemination, hematuria, bladder spasms, urinary retention, urinary tract infection, and bladder perforation. Complication rates reported in different studies range from 4% to 6%, with urinary tract infection and hematuria being the most common, while bladder perforation requiring surgical repair occurs in 0.5% to 8.3% of complications [29,30,31]. On the other hand, for patients with MIBC, the standard treatment is RC, however, despite management, the overall 5-year survival rate is around 60%, and the decision to perform RC must be weighed against the risks, the impact on quality of life and the patient’s preferences [32,33]. Early complications, such as infectious, genitourinary, gastrointestinal, and wound-related complications, occur in up to 58% of patients with MIBC, and perioperative mortality has been reported at 3.2% at 30 days and 5.2% at 90 days. Additionally, patients’ independence, sexual, social, and psychological function, body image, and economic status are impaired, significantly impacting their quality of life [4,34,35,36].
A study built a model to evaluate the economic impact of BC in the USA, where they observed that the average cost per patient for NMIBC was $31,375 USD, while for MIBC it was $56,247 USD[37], however, these costs could vary depending on the therapy used, a high-risk NMIBC treated with BCG could bring costs exceeding $200,000 USD after 5 years of management, and an MIBC on trimodality therapy can exceed $200,000 USD for each year of treatment [38]. All these differences in the morbimortality and costs between the treatment in NMI and MI disease highlight the importance to properly distinguish the level of invasion.
This instrument could also reduce the need for re-TURBT when there is diagnostic uncertainty, which in the literature is described as varying from 17% to 71% [16,17,39]. This could also reduce the costs associated with a second TURBT, which varies from 1,700 to 2,900 euros per patient, which could increase substantially if it is associated with complications and requires prolonged hospitalization [40,41,42].

4. Materials and Methods

Study: Retrospective, observational, analytical study
Patients: A retrospective cohort of BC patients from the Dr. Franco Ravera Zunino’s Hospital who underwent TURBT and RC between January 2022 and October 2024 was included. A total of 32 patients were considered (11 RC and 21 TURBT) Patients with non-urothelial tumors, CIS or metastatic disease at diagnosis were excluded.
Clinical data: Patient clinical information was obtained from the pathological biopsies reports (T, tumour grade, muscle invasion, specimen weight) and the hospital clinical electronic record system.
This study was approved by the Scientific Ethical Committee of Servicio de Salud Metropolitano Oriente, the waiver of informed consent was approved by the committee.
Tumor samples and Image processing: Biopsies were obtained by TURBT or RC procedures and formalin embedded and paraffin fixed (FEPF). From the selected cases, 3-4 µm sections of FEPF samples were obtained and collected on positively charged slides. Sections stained with Hematoxylin Eosin (HE) using the ST Infinity HE Staining System kit (Leica Biosystems 3801698) in an automated mode in Autostainer ST5020 Leica equipment following the manufacturer’s instructions. MTS was then performed using the Trichrome Staining Kit (Roche 860-031) in an automated process on Ventana BenchMark Special Stains equipment following the manufacturer’s instructions.
Photographs with a total magnification of 400X were taken with a Leica FLEXACAM C1 camera, 10 to 15 photographs per biopsy (Leica DM2500 microscope, 400X (40X objective and a 10X eyepiece).
One slide per biopsy was selected that had several areas of non-disaggregated stroma associated with neoplastic urothelium, invasive or non-invasive, without sectioning or staining artifacts. In biopsies with little stroma per slide and more than one slide, areas from two or more slides were photographed.
Machine Learning: A total of 702 histopathological images of BC tumors were collected for this study. The images were annotated by expert pathologists and categorized into two classes: NMIBC, which includes stages Ta and T1, and MIBC tumors. The dataset was randomly split into training and validation sets with a ratio of 75:25 respectively. Data augmentation techniques, including rotation, flipping, and zooming, were applied to the training set to increase variability and prevent overfitting. A Convolutional Neural Network (CNN) was employed for the classification task. Given the limited size of the dataset, Transfer Learning was utilized to leverage the pre-trained VGG16 model, which was initially trained on the ImageNet dataset. The fully connected layers of the pre-trained model were replaced with custom layers tailored to the binary classification problem NMIBC (Ta and T1) vs. MIBC.
The model was fine-tuned to adapt it to the specific task of histopathological image classification. During the initial phase, the convolutional layers of VGG16 were frozen, and only the newly added fully connected layers were trained. In the subsequent phase, the entire model, including the convolutional layers, was fine-tuned with a low learning rate to further optimize performance. The model was trained using the Adam optimizer with a categorical cross-entropy loss function. The model’s performance was evaluated using the validation set during training to monitor overfitting and guide hyperparameter tuning. After training, the model was tested on the validation set to assess its generalization ability. Performance metrics, including accuracy, precision, recall, F1-score, and the area under the receiver operating characteristic curve (AUC-ROC), were calculated to comprehensively evaluate the model.
Data analysis:
Finally, the model probabilities were correlated with the aforementioned clinical variables of the patients. Statistical analysis was performed with IBM SPSS Statistics v25 using chi square (χ2) or Fisher exact test as appropriate for association analyses. Spearman correlation analysis was performed to evaluate correlation between quantitative variables and the probabilities of the model. Statistical significance was set at p < 0.05.
Figure 1 graphically summarizes the methodology used.

5. Conclusions

In summary, AI has been used for various applications, both in the bladder and other organs, so it is a tool that could potentially help improve diagnostic accuracy when used as an aid to medical assessment. Thus, our study suggests that CNN-based MTS stain histological images could help identify NMIBC from MIBC and therefore reduce interobserver variability among pathologists, preventing the under or overtreatment, having crucial relevance the first sample for the future management, helping to avoid a second TURBT or even preventing a RC when the muscularis mucosae can produce a challenging interpretation against the muscularis propria. This would allow for significant savings in morbidity and mortality, and reduce burden associated with the disease, and would be especially useful in centers without trained uropathologists, which could have greater interobserver variability in the diagnosis and staging of BC. Furthermore, its incorporation into digital histopathology platforms has allowed for the validation of clinically relevant morphological biomarkers in urological oncology [43]. These findings support the relevance of MTS not only as a descriptive technique but also as a basis for the development of quantitative algorithms that integrate histological analyses with advanced predictive models, as well as a star point to future research that relate microenvironment with the oncological features and outcomes.

Author Contributions

D.P.: Conceptualization - Writing— original draft - review & editing - Investigation - Formal analysis. H.G.: Methodology - Software - Formal analysis - Validation. K.R.: Methodology - Resources. R.L.: Writing - original draft - investigation. C.S.: Writing - original draft - Investigation. R.G.: Writing - original draft - Investigation. M.L.: Writing - original draft - Investigation.. C.B.L.: Conceptualization —writing—original draft. J.C.B.: Conceptualization - Project administration - Formal analysis - Writing - review & editing - supervisor - . All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

The study was conducted in accordance with the Declaration of Helsinki, and approved by the Institutional Review Board and Ethics Committee of Servicio de Salud Metropolitano Oriente.

Informed Consent Statement

Patient consent was waived due to patient identification or personal data will remain anonymous in any presentation or communication generated by the study; furthermore, this work is retrospective and only involves clinical records or databases.

Data Availability Statement

Datasets analyzed or generated during the study are unavailable due to privacy restrictions.

Conflicts of Interest

The authors declare no conflicts of interest.

Abbreviations

The following abbreviations are used in this manuscript:
BC
NMIBC
MIBC
MTS
ECM
CNN
TURBT
RC
ML
AI
MMPs
FEPF
HE
CIS
AUC-ROC
Bladder Cancer
Non-Muscle Invasive Bladder Cancer
Muscle Invasive Bladder Cancer
Masson’s Trichrome Staining
Extracellular Matrix
Convolutional Neural Network
Transurethral Resection of Bladder Tumor
Radical Cystectomy
Machine Learning
Artificial Intelligence
Matrix Metalloproteinases
Formalin-Embedded and Paraffin-Fixed
Hematoxylin Eosin
Carcinoma in situ
Area Under the Receiver Operating Characteristic curve

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Figure 2. Representative images from Masson’s trichrome stained samples (NMI and MI). A) Masson’s trichrome stain (400x) High-grade urothelial carcinoma infiltrating the lamina propria. Stromal collagen fibers stained blue and neoplastic urothelial cells stained pink. B) Masson’s trichrome stain (400x). High-grade urothelial carcinoma infiltrating the muscularis propria. Stromal collagen fibers stained blue, muscularis propria red/pink, and neoplastic urothelial cells pink.
Figure 2. Representative images from Masson’s trichrome stained samples (NMI and MI). A) Masson’s trichrome stain (400x) High-grade urothelial carcinoma infiltrating the lamina propria. Stromal collagen fibers stained blue and neoplastic urothelial cells stained pink. B) Masson’s trichrome stain (400x). High-grade urothelial carcinoma infiltrating the muscularis propria. Stromal collagen fibers stained blue, muscularis propria red/pink, and neoplastic urothelial cells pink.
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Figure 3. Schematic representation of bladder cancer invasion and metastatic dissemination. Tumor cells originating in the urothelium progressively invade the underlying muscle layer through degradation of the extracellular matrix (ECM). Once tumor cells breach the basement membrane, they can enter the lymphatic system, facilitating their dissemination to distant sites. Migrating cancer cells eventually colonize other organs, where they establish secondary tumors and promote metastatic growth.
Figure 3. Schematic representation of bladder cancer invasion and metastatic dissemination. Tumor cells originating in the urothelium progressively invade the underlying muscle layer through degradation of the extracellular matrix (ECM). Once tumor cells breach the basement membrane, they can enter the lymphatic system, facilitating their dissemination to distant sites. Migrating cancer cells eventually colonize other organs, where they establish secondary tumors and promote metastatic growth.
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Figure 1. Workflow for CNN-based classification of bladder cancer using Masson’s trichrome–stained biopsies. Tumor biopsies from patients diagnosed with bladder cancer classified as non–muscle invasive (NMI) or muscle invasive (MI) were processed using Masson’s trichrome staining to differentiate tumor cells from the surrounding extracellular matrix (ECM), particularly collagen fibers. High-resolution images of stained sections were then used as input for a convolutional neural network (CNN) model and automatically classify tumors as MI or NMI based on microenvironmental features.
Figure 1. Workflow for CNN-based classification of bladder cancer using Masson’s trichrome–stained biopsies. Tumor biopsies from patients diagnosed with bladder cancer classified as non–muscle invasive (NMI) or muscle invasive (MI) were processed using Masson’s trichrome staining to differentiate tumor cells from the surrounding extracellular matrix (ECM), particularly collagen fibers. High-resolution images of stained sections were then used as input for a convolutional neural network (CNN) model and automatically classify tumors as MI or NMI based on microenvironmental features.
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Table 1. Patients clinical characteristics. Data is shown as Average (±Standard desviation) or percentage of total sample, accordingly. aMann-Whitney U bTest Chi Square or Fisher Exact Test.
Table 1. Patients clinical characteristics. Data is shown as Average (±Standard desviation) or percentage of total sample, accordingly. aMann-Whitney U bTest Chi Square or Fisher Exact Test.
NMIBC MIBC p value
Age 73 (±14) 66.38 (±18) 0.35a
Charlson 5.5 (±3) 4 (3) 0.52a
BMI 27.6 (±6.1) 29.7 (±12) 0.85a
Tabaquism 45.45% 40% 0.98b
Weight (g) 2.5 (±2.6) 11 (±5.5) 0.01a
Model’s Probability 0.487 0.998 0.001a
Table 2. Diagnostic results of the artificial intelligence model for NMIBC and MIBC diagnosis.
Table 2. Diagnostic results of the artificial intelligence model for NMIBC and MIBC diagnosis.
Variable Value
Accuracy (training) 95.2%
Accuracy (validation) 90.1%
Tumoral grade p=0.005
Tumoral weight p=0.017
Tumoral size p=0.01
Table 3. ROC Curves of CNN model. PPV: Positive Predictive Value NPV: Negative Predictive Value.
Table 3. ROC Curves of CNN model. PPV: Positive Predictive Value NPV: Negative Predictive Value.
Variable Value
AUC 0.8
Sensibility 0.9
Specificity 0.91
PPV 0.82
NPV 0.95
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