Submitted:
20 December 2025
Posted:
22 December 2025
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Abstract
Objective: To address the problems of insufficient universality and ambiguous mechanism explanations in the current evaluation system for the natural bias of plant-derived food materials, this study verified the adaptability of the three-dimensional evaluation rules, analyzed the synergistic regulatory mechanism of nature bias formation, and improved its standardized evaluation system on the basis of the previously established “environment–metabolism–growth” three-dimensional evaluation system. Methods: A total of 975 plant-derived samples (including 412 daily food materials, 563 Chinese medicinal materials, and 163 special groups) integrated from public databases and authoritative literature were selected as research objects, and 934 valid samples were obtained after screening. Pearson correlation analysis, partial correlation analysis, simple linear regression (including 10-fold cross-validation) and other methods were used to verify the adaptability of the three-dimensional evaluation rules combined with public metabolic and habitat data; moreover, the synergistic regulatory mechanism of natural bias was analyzed on the basis of plant physiology theory. Results: The three-dimensional evaluation results showed good adaptability, with a consistency rate of 97.2% for 781 valid common plant samples and 92.5% for 153 valid special group samples after correction. The correlations among the environment, metabolism, and nature bias were stable: soil moisture was strongly negatively correlated with the flavonoid content (correlation coefficient r=-0.82, significance P<0.001), and annual sunshine duration was strongly positively correlated with the volatile oil and 6-gingerol contents (correlation coefficients r=0.75 and 0.70, respectively, with significance P<0.001 for both). 6-Gingerol was the core component of Yang tendency (coefficient of determination R²=0.88), and the coverage of the evaluation system was more comprehensive after the quantitative dimension of this Yang tendency component was improved. Limitations: Due to the constraints of public data, the proportion of samples from extreme habitats such as high altitudes (>5000 m) and deep seas (>1000 m) is low (only 18.2%), which may affect the verification accuracy of adaptability in extreme scenarios; the lack of metabolic difference data among different genotypes of the same species in public databases prevents in-depth analysis of the regulatory effect of genotype on natural bias. Conclusions: The “environment–metabolism–growth” three-dimensional evaluation rules have strong universality and clear regulatory mechanisms. The system constructed on the basis of public data can provide a standardized basis for TCM dietary therapy and quality evaluation of medicinal plants and offer a standardized path for the evaluation of the natural bias of plant-derived food materials in the context of TCM modernization.

Keywords:
1. Introduction
Research Objectives
- ①
- Verify the adaptability of the three-dimensional rules for common plants and special groups on the basis of public data and formulate correction schemes for special groups;
- ②
- Analyze the synergistic regulatory mechanism of nature bias via the “environment–metabolism–growth” system and clarify the quantitative contribution of core metabolic components to the intensity of nature bias;
- ③
- Verify the adaptability of the rules to classic TCM theories and construct a promotable standardized nature bias evaluation system.
2. Methods
2.1. Sample Data and Screening Standards
2.1.1. Overview of Sample Data
- ①
- Type coverage: 412 daily food materials (including 38 grains, 156 vegetables, 92 fruits, etc.), 563 Chinese medicinal materials (including 215 rhizomes, 128 leaves, 62 flowers, etc.), and 163 special groups (48 fungi, 33 parasitic plants, 35 deep-sea plants, 24 lichens, 23 parasitic‒fungal composite groups). There were 812 common plants in the total samples (975--163), with no overlap between special groups and common plants. The data were derived from the Pharmacopoeia of the People’s Republic of China (Volume I) [1] and the China Crop Germplasm Resources Database [5];
- ②
- Geographical and habitat coverage: Terrestrial samples covered northern arid regions (annual precipitation <400 mm), southern high-humidity regions (annual precipitation >800 mm), and high-altitude regions (≥3500 m); deep-sea samples covered regions with water depths ≥200 m. Environmental data were obtained from the China Meteorological Science Data Center [19] and the State Oceanic Administration Deep-Sea Algae Habitat and Metabolism Database [21];
- ③
- Seasonal coverage: The total samples included 240 species in spring, 260 in summer, 235 in autumn, and 240 in winter, covering the complete growth cycle of the plants;
- ④
- Data sources:
2.1.2. Data Screening Standards
- ①
- Completeness of basic information: Twelve samples (7 common plants, 5 special groups) with missing growth cycles or habitat parameters were excluded;
- ②
- Outlier exclusion: Samples with abnormal metabolic component detection data (29 species, including 24 common plants and 8 special groups such as 5 deep-sea plants and 3 parasitic plants) were excluded on the basis of the “mean ± 3 standard deviations” standard;
- ③
- Classification of valid samples: 781 valid common plants (812-7-24) and 153 valid special groups (163-5-8);
- ④
- Traditional nature bias arbitration: The nature bias recorded in the Pharmacopoeia of the People’s Republic of China (Volume I) [1] was used as the gold standard; samples not included were referred to Chinese Materia Medica [12]; in the case of conflicting records, cross-validation with ≥3 independent studies was adopted for confirmation.
2.2. Core Research Methods
2.2.1. Pearson Correlation Analysis and Partial Correlation Analysis
2.2.2. Simple Linear Regression Analysis (Including the Segmented Model)
2.2.3. Consistency Verification
2.2.4. Calculation of the TCM Theory Conformity Rate
3. Results
3.1. Universality Verification Results of the Three-Dimensional Evaluation Rules
3.1.1. Adaptability to Common Plant Samples
3.1.2. Adaptability to Special Group Samples (Including Application of Correction Coefficients)
3.1.3. Multi-Scenario Adaptability
3.2. Correlation Results of Nature Bias Regulation by Environment-Metabolism-Growth
3.2.1. Core Correlation Characteristics
3.2.2. Quantitative Contribution of Metabolic Components to Nature Bias Intensity
3.2.3. Relationships Among Nature Bias, the Environment, and Core Components
3.3. Evidence of Adaptability to Classic TCM Theories
3.4. Visual Presentation of Nature Bias Rules
4. Discussion
4.1. Innovative Value and Academic Contributions of the Three-Dimensional Evaluation Rules
4.1.1. Dual Improvement of Universality and Data Reliability
4.1.2. Deepening of the Nature Bias Regulatory Mechanism and Improvement of the Component System
4.1.3. Optimization of Practical Implementability of the Standardized System
4.2. Comparative Advantages over Similar Studies
4.3. Preliminary Explanation of the Application Value of the Three-Dimensional Evaluation Rules
4.3.1. TCM Dietary Therapy: Quantitative Basis for “Plant + Animal” Matching
4.3.2. TCM Formula Compatibility: Analysis of Nature Bias Synergy in “Monarch-Minister-Assistant-Guide”
4.3.3. Food Material Cultivation: Reverse Quality Control of Target Nature Bias
5. Limitations and Future Work
5.1. Research Limitations
- ①
- Bias in extreme habitat samples
- ②
- Lack of genotype data
- ③
- Insufficient clinical correlation
5.2. Future Work Directions
- ①
- Expanded public data coverage
- ②
- Deepen interdisciplinary correlation research
- ③
- Development of practical application tools
- ④
- Extending special scenario applications
6. Conclusions
6.1. Strong Universality and Reliable Data of the Three-Dimensional Rules
6.2. Clear Regulatory Mechanism and Definite Quantitative Logic
6.3. Excellent Adaptability to Classic TCM Theories
6.4. Establishment of a Standardized Nature Bias Evaluation System
Supplementary Materials
Author Contributions
References
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| Special Group Type | Correction Indicator | Correlation r for Common Plants | Correlation r for Special Groups | Correction Coefficient | Valid Verification Samples (species) | Corrected Consistency Rate (%) | Literature Basis |
|---|---|---|---|---|---|---|---|
| Fungi | Polysaccharides | -0.64 | -0.32 | 0.5 | 48 | 93.8 | [9,15] |
| Parasitic plants | Terpenoids | 0.7 | 0.56 | 0.8 | 33 | 90.9 | [14,18] |
| Deep-sea plants | Soil moisture weight | 25% (basic value) | 20% (adapted value) | -5% | 35 | 91.4 | [16,21] |
| Lichens | Strong radiation adaptation factor weight | 20% (basic value) | 25% (adapted value) | 5% | 24 | 91.7 | [16,23] |
| Parasitic-fungal composite groups | Polysaccharides + Terpenoids | -0.91429 | -0.57143 | 0.5/0.8 | 23 | 91.3 | [9,14] |
| Correlation Level | Core Indicator 1 | Core Indicator 2 | Correlation Coefficient r | Significance P | Brief Description of Regulatory Mechanism |
|---|---|---|---|---|---|
| Environment→Metabolism | Soil moisture | Flavonoid content | -0.82 | <0.001 | High humidity promotes flavonoid synthesis and inhibits volatile oil synthesis |
| Environment→Metabolism | Annual sunshine | Volatile oil content | 0.75 | <0.001 | Long sunshine promotes the synthesis of volatile oils and terpenoids |
| Environment→Metabolism | Annual sunshine | Gingerols (6-gingerol) | 0.7 | <0.001 | Long sunshine promotes gingerol synthesis |
| Metabolism→Nature bias | Flavonoid content | Cool bias intensity | -0.91 | <0.001 | Higher flavonoid content indicates stronger cool bias |
| Metabolism→Nature bias | Volatile oil content | Warm bias intensity | 0.89 | <0.001 | Higher volatile oil content indicates stronger warm bias |
| Metabolism→Nature bias | Gingerol content | Warm bias intensity | 0.83 | <0.001 | Higher gingerol content indicates stronger warm bias |
| Growth→Metabolism | Growth cycle | Flavonoid accumulation | 0.68 | <0.001 | Longer cycle leads to more flavonoid accumulation |
| Core Component | Nature Bias Direction | Regression Equation | Coefficient of Determination R² | Applicable Range | Verification Case (Component Content→Nature Bias Score) |
|---|---|---|---|---|---|
| Flavonoids | Cool-tending | y=-1.65x-0.42 | 0.91 | All content ranges | Lonicera japonica (3.0%→-5.37) |
| Alkaloids | Cool-tending | y=-1.93x-0.51 | 0.87 | All content ranges | Coptis chinensis (3.2%→-6.69) |
| Volatile oils | Warm-tending | y=1.21x+2.05 | 0.9 | x≤4% | Zingiber officinale (2.2%→4.61) |
| Volatile oils | Warm-tending | y=0.62x+3.97 | 0.92 | x>4% | Syzygium aromaticum (5.2%→7.20) |
| Gingerols (6-gingerol) | Warm-tending | y=1.42x+1.89 | 0.88 | All content ranges | Zingiber officinale (2.5%→5.44) |
| Terpenoids | Warm-tending | y=1.56x+0.28 | 0.85 | All content ranges | Capsicum annuum (1.8%→2.99) |
| Nature Bias Grade | Typical Environmental Characteristics | Core Components (Dry Weight Ratio, %) | Representative Food Materials | Traditional Nature Bias Record |
|---|---|---|---|---|
| Extreme cold (-10~-7) | High humidity (≥40%), long cycle (≥180 days) | Flavonoids 4.2, Alkaloids 3.8 | Coptis chinensis, Sophora flavescens | Cold nature |
| Cool (-5~-3) | Moderate humidity (20%~40%), moderate cycle (90~180 days) | Flavonoids 2.5, Polysaccharides 1.2 | Momordica charantia, Oenanthe javanica | Cool nature |
| Neutral (-1~1) | Balanced environment (humidity 20%~40%, sunshine 1200~2500 h) | Polysaccharides 2.0, Flavonoids 1.0 | Triticum aestivum, Zea mays | Neutral nature |
| Warm (3~5) | Moderate sunshine (2000~2500 h), moderate cycle (90~180 days) | Volatile oils 1.8, Gingerols 1.2 | Cucurbita moschata, Allium sativum | Warm nature |
| Extreme hot (7~10) | Low humidity (≤20%), short cycle (≤90 days) | Volatile oils 3.5, Gingerols 2.0, Terpenoids 1.2 | Capsicum annuum, Zingiber officinale | Hot nature |
| TCM Theory | Explanatory Mechanism of Three-Dimensional Rules | Valid Verification Samples (species) | Valid Samples Consistent with the Theory (species) | Conformity Rate (%) | Evidence Conclusion |
|---|---|---|---|---|---|
| Wetness generates cold, drought generates heat | High humidity promotes flavonoid/alkaloid synthesis; aridity promotes volatile oil/gingerol synthesis | 612 (282 high-humidity/330 arid) | 569 (265 high-humidity/304 arid) | 92.9 | The rules can scientifically explain the theoretical essence |
| Yang transforms into qi, Yin forms substance | Fast-growing plants accumulate volatile oils/gingerols; slow-growing plants accumulate flavonoids/alkaloids | 572 (290 fast-growing/282 slow-growing) | 542 (275 fast-growing/267 slow-growing) | 94.7 | Matches the theoretical connotation of “Yang transforms into qi, Yin forms substance” |
| Correspondence between heaven and humans | Nature bias dynamically adjusts with regions/seasons and synergizes with the environment | 720 (445 multiregion/275 multiseason) | 663 (410 regional/253 seasonal) | 92.1 | Verifies the holistic view of “heaven-earth-organism” in the theory |
| Comparison Dimension | Traditional Empirical Judgment [1,12] | Single-Dimensional Modern Evaluation [3,8] | Three-Dimensional Evaluation Rules of This Study (Public Data Integration) |
|---|---|---|---|
| Data Source | Classic empirical summary | Local experimental data | Multisource public databases (Pharmacopoeia, crop germplasm bank, etc.) |
| Sample Coverage | <200 species (common food materials, total samples) | <300 species (common plants, experimental samples) | 934 species (full groups, valid samples) |
| Special Group Adaptability | 0% | <60% (experimental samples) | 92.5% (valid samples, gold standard consistency rate) |
| Warm-Tending Component Integrity | No quantitative components | Only volatile oils/terpenoids | Volatile oils + gingerols + terpenoids (R² ≥0.85 for all) |
| Mechanism Explanation Basis | Empirical description | Single experimental correlation | Three-level regulatory logic based on multisource public data |
| Practical Operability | Weak (relying on experience) | Moderate (requiring experimental equipment) | Strong (public data available, scoring model calculable) |
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