Submitted:
24 July 2025
Posted:
24 July 2025
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Abstract
Keywords:
1. Introduction
2. Materials and Methods
2.1. Chemicals
2.2. SH-SY5Y Culturing, Differentiation, and Chemical Exposures
2.3. Cell Viability Assay
2.4. Caspase Activity Assay
2.5. Mitochondrial Membrane Potential
2.6. ATPase Activity
2.7. Mitochondrial Bioenergetics in Differentiated SH-SY5Y Cells
2.8. Intracellular Reactive Oxygen Species in Differentiated SH-SY5Y Cells
2.9. RNA-Sequencing
2.10. Bioinformatics of Pathways
2.11. Real-Time PCR Analysis
2.12. Statistical Analysis
3. Results
3.1. Cytotoxicity Based on Cell Viability
3.2. Caspase 3/7 Activity
3.3. Mitochondrial Membrane Potential
3.4. ATPase Activity
3.5. Reactive Oxygen Species
3.6. Mitochondrial Bioenergetics
3.7. Transcriptome Profiling in SH-SY5Y Cells Following BPS and BPF Exposure
3.8. Real-Time PCR Analysis
4. Discussion
5. Conclusion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AChE | Acetylcholinesterase |
| ADAM10 | A Disintegrin and Metalloproteinase Domain 10 |
| ADAM17 | A Disintegrin and Metalloproteinase Domain 17 |
| AM/Rot | Antimycin/Rotenone |
| BAK1 | Bcl-2 Antagonist/Killer 1 |
| BAX | Bcl-2-Associated X |
| BACE1 | Beta-secretase 1 |
| BLC-2 | B-Cell Leukemia/Lymphoma 2 |
| BPA | Bisphenol A |
| BPF | Bisphenol F |
| BPS | Bisphenol S |
| Casp3/7 | Caspase 3/7 |
| Caspase3 | Cysteinyl aspartate specific proteinase 3 |
| CYT C | Cytochrome c |
| DCFDA | 2’,7’-dichlorofluorescein diacetate |
| DIG | Digitonin |
| DMSO | Dimethyl sulfoxide |
| ER | Estrogen receptor |
| FCCP | Carbonyl cyanide-4-phenylhydrazone |
| FPKM | Fragments per kilobase of transcript per million |
| GEO | Gene Expression Omnibus |
| GO | Gene Ontology |
| GPCR | G-protein coupled receptors |
| GSEA | Gene set enrichment analysis |
| HSPA8 | Heat Shock Protein Family A Member 8 |
| HSPA14 | Heat Shock Protein Family A Member 14 |
| HSP90AA1 | Heat Shock Protein 90 Alpha Family A Member 1 |
| IL-1β | Interleukin-1β |
| IL2 | Interleukin 2 |
| LDH | Lactate dehydrogenase |
| MAO-A | Monoamine oxidase-A |
| MDA | Malondialdehyde |
| MEN | Menadione |
| MMP | Mitochondrial membrane potential |
| NF-κB | Nuclear factor-κB |
| OM | Oligomycin |
| POMC | Pro-opiomelanocortin |
| RA | Retinoic acid |
| rNSCs | Rat fetal neural stem cells |
| ROS | Reactive oxygen species |
| TBHP | Tert-Butyl hydroperoxide |
| TNF | Tumor necrosis factor |
| TOMM70 | Translocase of Outer Mitochondrial Membrane 70 |
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| Gene name | Full name | log2FC | padj | p-value |
| RPS2P55 | Ribosomal Protein S2 Pseudogene 55 | -1.455 | 0.001 | 4.4149×10-08 |
| MT-TT | Mitochondrially Encoded TRNA-Thr (ACN) | 1.587 | 0.006 | 6.6467×10-07 |
| HLA-C | Major Histocompatibility Complex, Class I, C | -2.063 | 0.006 | 1.4419×10-06 |
| AC016596.2 | Ribosomal protein L41 | -1.929 | 0.006 | 1.7420×10-06 |
| RPL35P5 | Ribosomal Protein L35 Pseudogene 5 | -2.069 | 0.006 | 1.7752×10-06 |
| AC010343.1 | Ribosomal protein S8 pseudogene | -1.794 | 0.006 | 2.1002×10-06 |
| RPS10P3 | Ribosomal Protein S10 Pseudogene 3 | -2.368 | 0.007 | 2.7400×10-06 |
| Unknown | Unknown | -2.907 | 0.007 | 3.1888×10-06 |
| DUSP8 | Dual Specificity Phosphatase 8 | -1.488 | 0.007 | 3.4916×10-06 |
| AC011005.1 | Unknown | -2.424 | 0.007 | 3.9371×10-06 |
| Chemical | Name |
# of Entities |
Expanded # of Entities | # of Measured Entities | Median Change | Normalized Score | p-value |
| BPS | Humoral Immunity in Vitiligo | 94 | 161 | 63 | -1.06 | 1.71 | 0.0017 |
| Natural Killer T-Cell Roles in Diabetes Mellitus Type 1 | 82 | 132 | 56 | 1.03 | 1.78 | 0.0018 | |
| T-Cell Maturation (Hypothesis) | 77 | 436 | 52 | 1.04 | 1.66 | 0.0018 | |
| IL2 Expression Targets | 97 | 138 | 61 | -1.05 | 1.77 | 0.0018 | |
| Atopic Dermatitis Onset | 72 | 348 | 51 | -1.06 | 1.69 | 0.0018 | |
| Treg-Cell Activation in Diabetes Mellitus | 72 | 121 | 57 | 1.03 | 1.67 | 0.0018 | |
| CD8 -> NF-kB Expression Targets | 44 | 63 | 30 | 1.05 | 1.73 | 0.0019 | |
| IL15R -> NF-kB/NFATC Signaling | 15 | 22 | 10 | -1.21 | 1.80 | 0.0019 | |
| RAS/RAF/MAPK Signaling Activation by Blocking of Tumor Suppressors | 47 | 427 | 27 | -1.06 | 1.79 | 0.0019 | |
| CD80 -> AP-1 Expression Targets | 28 | 32 | 14 | 1.07 | 1.80 | 0.0019 | |
| BPF | Dectin-2 (CLEC6A)/Mincle (CLEC4E)/BDCA2 (CLEC4C) Signaling | 23 | 33 | 11 | -1.02 | 1.86 | 0.0019 |
| IgE Receptors -> Targets in Lymphoid System and Blood | 25 | 70 | 6 | -1.38 | 1.73 | 0.0020 | |
| GPCRs Family -> Expression Targets in Bone | 15 | 17 | 6 | 1.33 | -1.64 | 0.0021 | |
| S/G2 Phase Transition | 49 | 247 | 132 | -1.13 | 1.51 | 0.0032 | |
| TNF -> NF-kB Expression Targets | 127 | 136 | 62 | -1.05 | 1.72 | 0.0033 | |
| TLR9 Expression Targets | 42 | 47 | 24 | 1.03 | 1.82 | 0.0035 | |
| CNR1-> Expression Targets in Nerve Tissue | 35 | 89 | 14 | 1.01 | 1.73 | 0.0036 | |
| Acute Phase in Atopic Dermatitis | 53 | 82 | 22 | 1.04 | 1.69 | 0.0038 | |
| Muscular Dystrophy, Facioscapulohumeral | 32 | 343 | 10 | 1.21 | 1.62 | 0.0039 | |
| Aminoglycosides and Cisplatin Induced Ototoxicity (Mouse Model) | 25 | 237 | 9 | -1.13 | 1.70 | 0.0040 |
| Overlapping Pathways |
# of Measured Entities BPF |
Median Change BPF | p-value PBF |
# of Measured Entities BPS |
Median Change BPS | p-value PBS |
| CD4+ T-Cell Function Decline in HIV | 56 | -1.006 | 0.005 | 57 | 1.006 | 0.004 |
| Natural Killer T-Cell Roles in Diabetes Mellitus Type 1 | 57 | -1.008 | 0.047 | 56 | 1.030 | 0.002 |
| Eosinophil Activation | 58 | -1.047 | 0.007 | 59 | -1.111 | 0.026 |
| IL2 Expression Targets | 61 | -1.058 | 0.014 | 61 | -1.047 | 0.002 |
| TNF -> NF-kB Expression Targets | 62 | -1.048 | 0.003 | 63 | -1.043 | 0.005 |
| CD8+ T-Cell Response in Celiac Disease | 65 | -1.076 | 0.016 | 64 | -1.096 | 0.004 |
| Natural Killer Cell Activation | 65 | -1.076 | 0.032 | 64 | -1.079 | 0.012 |
| Protein Folding | 69 | -1.224 | 0.021 | 71 | -1.264 | 0.035 |
| IGF1 -> ELK/SRF/HIF1A/MYC/SREBF Expression Targets | 74 | -1.107 | 0.037 | 74 | -1.101 | 0.036 |
| Insulin -> MEF/MYOD Expression Targets | 77 | -1.056 | 0.029 | 79 | -1.125 | 0.046 |
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