Submitted:
22 April 2025
Posted:
24 April 2025
Read the latest preprint version here
Abstract

Keywords:
1. Introduction
- Essential azoheterocyclic core
- N-methyl group for optimized GABA-A receptor binding
- Strategically positioned cycloalkyl/heterocyclyl rings for receptor pocket compatibility
- Azapirone structure with piperazine linker
- Specific alkylated terminal rings (pyrimidine, piperidine, pyridine, etc.)
- Optimal four-carbon spacing between cyclic systems
- Cycloalkyl/alkyl groups for metabolic stability
- Multiple hydrogen bond donors/acceptors
- Flexible alkyl chains for conformational adaptation
- Balanced lipophilicity for blood-brain barrier penetration
2. Results
2.1. In Silico Analysis of Nootropic Potential
2.2. Synthesis of Novel spiro[1,2,4]triazolo[1,5-c]quinazoline derivatives
2.3. In Silico ADMET Evaluation
2.4. Evaluation of Behavioral and Neurobiochemical Effects In Vivo
2.4.1. Open Field Test Following Ketamine Anesthesia
1.1.1. Study of Markers of Neuronal Damage
1.1. Preliminary Structure-Activity Relationships from Experimental Findings
1.1.1. Effect of Spiro-Junction Type
1.1.1. Influence of 2'-Position Substituents
- Cyclopropyl combined with N-methylpiperidine (compound 31) produced stimulatory and anxiolytic effects while demonstrating strong anti-inflammatory activity.
- Cyclohexyl derivatives (compounds 26 and 32) consistently normalized ketamine-induced hyperactivity, with compound 26 showing exceptional ability to restore Bcl-2 levels and upregulate HIF-1 mRNA.
- Adamantyl substitution (compound 33) resulted in a unique profile with sedative-like properties.
1.1.1. Behavioral and Biochemical Correlations
1.1. Molecular Docking Analysis of Receptor Interactions
1.1.1. Receptor Binding Profiles
1.1.1. Analysis of Binding Interactions
1.1. Summary of Key Findings
3. Discussion
1.1. ADMET Profiles and Compound Selection
1.1. Behavioral Effects and Neurobiochemical Mechanisms
1.1. Structure-Activity Relationships
1.1.1. Influence of Spiro-Junction Type
1.1.1. Impact of 2'-Position Substituents
1.1.1. Behavioral Markers and Neurobiochemical Correlates
1.1. Molecular Mechanisms and Target Hypotheses
1.1. Multi-Target Engagement and Polypharmacology
- 26 appears to function primarily through enhanced cell survival pathways (Bcl-2 restoration) and adaptive responses (HIF-1 upregulation), facilitated by balanced receptor engagement.
- 31 primarily modulates inflammatory pathways (IL-1β and caspase-1 reduction) with moderate receptor interaction, suggesting its mechanism involves signaling cascades downstream of receptor activation.
- 24's strong GABA(A) and glutamate receptor binding suggests direct neurotransmitter system modulation as its primary mechanism.
- Cyclohexane spirocycle + cyclohexyl substituent (26): preferentially activates cell survival and hypoxic adaptation pathways.
- N-methylpiperidine spirocycle + cyclopropyl substituent (31): primarily modulates inflammatory signaling cascades.
- Cyclohexane spirocycle + pyridin-3-yl substituent (24): directly modulates inhibitory and excitatory neurotransmission.
1.1. Therapeutic Implications and Future Directions
- For anti-anxiety applications with mild sedation: compound 24 (strongest GABA(A) binding).
- For neuroprotection with balanced cognitive effects: compound 26 (optimal Bcl-2 and HIF-1 modulation).
- For anti-neuroinflammatory applications with anxiolytic properties: compound 31 (superior anti-inflammatory profile).
- For enhanced GABA(A) binding: incorporate pyridin-3-yl substituent at 2'-position.
- For balanced neuroprotection: utilize cyclohexyl substituent at 2'-position with cyclohexane spirocycle.
- For anti-inflammatory potency: explore modifications of the cyclopropyl-piperidine scaffold.
- Compounds incorporating features of both 26 and 31 might yield candidates with dual neuroprotective and anti-inflammatory properties.
- Hybrids of 24 and 26 could enhance both direct GABA(A) modulation and cell survival pathway activation.
1.1. Limitations of the Study
- Single-dose testing: the in vivo evaluation tested compounds at only one dose, limiting understanding of dose-response relationships and therapeutic windows.
- Limited timeframe: the study focused on acute effects following ketamine administration rather than long-term outcomes.
- Protein-level validation: while the study provided valuable mRNA expression data for key markers (c-fos and HIF-1), we acknowledge the absence of protein-level validation through Western blot analysis for some markers.
- Absence of preliminary cell studies: the research proceeded directly to in vivo models without initial evaluation in relevant cell lines.
- Single animal model: using only the ketamine-induced cognitive impairment model may limit generalizability to other types of cognitive disorders.
- Sample size consideration: the study uses n=6-10 animals per group, which is relatively small.
- Indirect target validation: while molecular docking predicted binding to various receptors, direct receptor binding assays were not performed to confirm actual engagement with proposed targets.
- Incomplete pathway analysis: the neurobiochemical investigation focused on selected markers but did not comprehensively analyze all potential pathways involved in ketamine-induced neurotoxicity.
- Limited pharmacokinetic data: the study lacks information on blood-brain barrier penetration, central nervous system exposure, or metabolic stability of the compounds, relying primarily on in silico predictions.
- Sex differences unexplored: the study does not address potential sex-based differences in drug responses.
- Limited behavioral assessment: the behavioral evaluation relied primarily on the open field test.
- Species limitation: using only rats limits extrapolation to human conditions.
- Age considerations: the study used adult rats but did not explore how these compounds might affect developing or aging brains.
- Structural characterization gaps: X-ray crystallography confirmation of the three-dimensional structure was not included.
- Manufacturing considerations: the synthesis, while successful at laboratory scale, may face challenges in scale-up for potential clinical development.
4. Materials and Methods
1.1. Molecular Docking
1.1. Synthesis
1.1. Toxicity Studies
1.1. SwissADME Analysis
1.1. Biological Assay
1.1.1. Animals
1.1.1. Behavioral Tests
- Total distance traveled (cm)
- Overall motor activity (cm²/s)
- Activity structure (high activity, low activity, inactivity, %)
- Number of freezing episodes and entries into the center
- Distance traveled near the wall (cm) and in the central area of the arena (cm, %)
- Vertical exploratory activity (number of rearing on hind limbs near the wall and in the center)
- Number of short and long grooming events
- Number of defecation and urination acts
1.1.1. Removal of Animals from the Experiment
1.1.1. Preparation of Biological Material
1.1.1. Polymerase Chain Reaction in Real Time
1.1.1. Statistical Analysis
5. Conclusions
Supplementary Materials
Data availability statement
Ethics statement
Author contributions
Funding
Acknowledgements
Conflicts of interest
Publisher’s note
Abbreviations
| POCD | Postoperative Cognitive Dysfunction |
| CNS | Central Nervous System |
| HIF-1 | Hypoxia-Inducible Factor 1 |
| IL-1β | Interleukin-1 Beta |
| AMPA | α-Amino-3-Hydroxy-5-Methyl-4-Isoxazole Propionic Acid |
| GABA | Gamma-Aminobutyric Acid |
| 5-HT | 5-Hydroxytryptamine (Serotonin) |
| mGluR5 | Metabotropic Glutamate Receptor 5 |
| CRF1R | Corticotropin-Releasing Factor Receptor 1 |
| CB₂ | Cannabinoid Receptor Type 2 |
| NMDA | N-Methyl-D-Aspartate |
| ROS | Reactive Oxygen Species |
| i-NOS | Inducible Nitric Oxide Synthase |
| n-NOS | Neuronal Nitric Oxide Synthase |
| SAR | Structure-Activity Relationship |
| MW | Molecular Weight |
| n-ROTB | Number of Rotatable Bonds |
| n-HBA | Number of Hydrogen Bond Acceptors |
| n-HBD | Number of Hydrogen Bond Donors |
| TPSA | Topological Polar Surface Area |
| logP | Octanol-Water Partition Coefficient |
| MMP-9 | Matrix Metalloproteinase-9 |
| Bcl-2 | B-cell Lymphoma 2 |
| ADMET | Absorption, Distribution, Metabolism, Excretion, and Toxicity |
| GluA3 | Glutamate Receptor AMPA Type Subunit 3 |
| PCR | Polymerase Chain Reaction |
| ELISA | Enzyme-Linked Immunosorbent Assay |
| M2 | Muscarinic Acetylcholine Receptor M2 |
| D2 | Dopamine Receptor D2 |
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| Compounds | Structural features | Mechanism of activity* | Pharmacological effect |
|---|---|---|---|
| Diazepam | benzodiazepine | GABA-A receptor positive allosteric modulator (α1/β3/γ2L) | sedative and muscle relaxant (anxiolytic) (Smith et al., 2013) |
| AFDX-384 | benzodiazepine | muscarinic acetylcholine receptor antagonist (M2 and M4 subtypes) | treatment of dementia and schizophrenia (Suno et al., 2018) |
| Piracetam | pyrrolidine | AMPA receptor positive modulator and influences membrane fluidity, affecting ion transport and mitochondrial function | nootropic, used in cognitive impairment and myoclonus (Winblad, 2005) |
| Pramiracetam | pyrrolidine | glutamate receptor 3 (GluA3) | nootropic stimulant (Gouhie et al., 2024) |
| SB-269970 | pyrrolidine | selective 5-HT7 receptor antagonist | treatment of anxiety and depression and nootropic effects (Hagan et al., 2000) |
| Mavoglurant | indole | antagonist of the metabotropic glutamate receptor 5 (mGluR5) | obsessive-compulsive disorder (Doré et al., 2014) |
| Fabomotizole | benzimidazole | Selective MT3 (sigma-1) receptor ligand with anxiolytic properties | anxiolytic and neuroprotective agent (MedKoo Biosciences, 2025) |
| CP-154,526 | pyrrolo[3,2-e]pyrimidine | corticotropin-releasing factor receptor 1 (CRF1R) | treatment of alcoholism (Seymouret al., 2003) |
| JWH-133 | tetrahydrobenzo[c]chromene | cannabinoid (СВ2) receptor agonist, G protein coupled receptor | anxiolytic (Ivy et al., 2020) |
| Buspirone | azaspiro[4.5]decane | serotonin 5-HT1A receptor partial agonist | anxiolytic (treat anxiety disorders) (Li et al., 2012) |
| Risperidone | 1,2-benzoxazol; pyrido[1,2-a]pyrimidine | 5-HT (5-HT2C, 5-HT2A) receptors antagonist, D2 dopamine receptor | antipsychotic, anxiolytic (Wang et al., 2018) |
| Sub. | Toxicity index* |
LD50, mg/kg | Pred. acc., % |
HT | CG | IT | MG | CT |
|---|---|---|---|---|---|---|---|---|
| 25 | IV | 2000 | 54.26 | 0.63 | 0.50 | 0.92 | 0.59 | 0.53 |
| 26 | 2000 | 0.65 | 0.50 | 0.95 | 0.61 | 0.53 | ||
| 31 | 1200 | 0.73 | 0.50 | 0.96 | 0.57 | 0.60/yes | ||
| 32 | 2000 | 0.76 | 0.53 | 0.97 | 0.61 | 0.60/yes | ||
| 33 | 1200 | 0.76 | 0.53 | 0.99 | 0.61 | 0.60/yes | ||
| fabomotizole | 677 | 0.62 | 0.53 | 0.85 | 0.65 | 0.59/yes | ||
| piracetam | 2000 | 100 | 0.95 | 0.61 | 0.99 | 0.84 | 0.62/yes |
| Descriptors and properties |
Compounds | ||||||
|---|---|---|---|---|---|---|---|
| 25 | 26 | 31 | 32 | 33 | piracetam | fabomotizole | |
| MW (Da) | 336.47 | 378.55 | 295.38 | 337.46 | 389.54 | 142.16 | 307.41 |
| n-ROTB | 2 | 2 | 1 | 1 | 1 | 2 | 6 |
| n-HBA | 2 | 2 | 3 | 3 | 3 | 4 | 4 |
| n-HBD | 1 | 1 | 1 | 1 | 1 | 6 | 1 |
| TPSA | 42.74 | 42.74 | 45.98 | 45.98 | 45.98 | 63.40 | 75.68 |
| Consensus | 4.21 | 5.14 | 2.20 | 3.16 | 3.71 | -0.64 | 2.30 |
| Molar refractivity | 105.28 | 119.70 | 93.12 | 107.54 | 122.42 | 38.76 | 88.93 |
| Gastrointestinal absorption | high | ||||||
| Blood–brain barrier permeation | yes | no | yes | ||||
| Drug likeness | |||||||
| Lipinski (Pfizer); Muegge (Bayer); Ghose rules | yes | ||||||
| Veber (GSK) rules | yes | no/ MW<160, WLOGP<-0.4, MR<40 | yes | ||||
| Egan filter | no/ XLOGP3>5 | yes | no/MW<200 | yes | |||
| Lead-likeness | no | yes | no | yes | |||
| Bioavailability Score | 0.55 | ||||||
| Brenk alert, PAINS | no alerts | ||||||
| Sub. | Structural features |
Behavioral profile |
Key effects | Potential applications |
|---|---|---|---|---|
| 25 | spiro cyclohexane 2'-cyclopropyl 4-(tert-butyl) |
Anti-hyperactivity | Normalized total activity Reduced high activity duration Increased low activity duration Normalized immobility Increased grooming behavior |
Ketamine recovery Potential anxiolytic |
| 26 | spiro cyclohexane 2'-cyclohexyl 4-(tert-butyl) |
Anti-hyperactivity | Normalized total activity Reduced high activity duration Normal low activity Reduced immobility Increased grooming behavior |
Ketamine recovery Mild anxiolytic |
| 31 | spiro N-methylpiperidine 2'-cyclopropyl |
Stimulatory / Anxiolytic | Increased total activity Increased high activity duration Maximum center entries Increased distance traveled High free distance |
Anxiolytic Potential anti-depressant Enhanced recovery |
| 32 | spiro N-methylpiperidine 2'-cyclohexyl |
Anti-hyperactivity | Normalized total activity Reduced high activity duration Normal low activity Increased grooming behavior |
Ketamine recovery Anxiolytic |
| 33 | spiro N-methylpiperidine 2'-adamantyl |
Sedative-like | Moderately reduced activity Minimal center entries Highest immobility Reduced distance traveled Maintained elevated defecation |
Sedative Potential hypnotic Different mechanism than traditional anxiolytics |
| Amino acid residue | Distance, ų | Bond category | Bond type |
|---|---|---|---|
| 24 with GABA(A) receptor (6HUP) | |||
| SER206 | 3.09118 | Hydrogen Bond | Conventional Hydrogen Bond |
| ASP56 | 3.2852 | Hydrogen Bond | Carbon Hydrogen Bond |
| SER205 | 3.28938 | Hydrogen Bond | Carbon Hydrogen Bond |
| SER205 | 3.67482 | Hydrogen Bond | π-Donor Hydrogen Bond |
| SER206 | 3.90775 | Hydrogen Bond | π-Donor Hydrogen Bond |
| TYR58 | 5.76264 | Hydrophobic | π-π Stacked |
| TYR210 | 4.04531 | Hydrophobic | π-π Stacked |
| PHE77 | 4.01868 | Hydrophobic | π-π Stacked |
| MET57 | 5.04132 | Hydrophobic | Amide-π Stacked |
| VAL203 | 4.58572 | Hydrophobic | Alkyl |
| TYR58 | 4.9221 | Hydrophobic | π-Alkyl |
| ALA79 | 4.92852 | Hydrophobic | π-Alkyl |
| 31 with GABA(A) receptor (6HUP) | |||
| SER205 | 3.7526 | Hydrogen Bond | π-Donor Hydrogen Bond |
| PHE77 | 3.96894 | Hydrophobic | π-π Stacked |
| TYR210 | 3.99648 | Hydrophobic | π-π Stacked |
| 26 with M2 muscarinic acetylcholine receptor (5ZKB) | |||
| TYR403 | 2.87801 | Hydrogen Bond | Conventional Hydrogen Bond |
| ASP103 | 3.70202 | Electrostatic | π-Anion |
| TRP99 | 3.93043 | Hydrophobic | π-Sigma |
| TRP400 | 4.88215 | Hydrophobic | π-π T-shaped |
| TYR403 | 5.0193 | Hydrophobic | π-π T-shaped |
| ALA194 | 4.93091 | Hydrophobic | Alkyl |
| TYR104 | 5.41339 | Hydrophobic | π-Alkyl |
| TYR426 | 5.13581 | Hydrophobic | π-Alkyl |
| TYR426 | 5.27219 | Hydrophobic | π-Alkyl |
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