Submitted:
30 March 2025
Posted:
31 March 2025
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Abstract
Keywords:
Introduction
Materials and Methods
- Genotypic Data
- Phenotypic Simulation
- Statistical Analysis and Validation
Results
- Genomic Inflation Values
- Comparison of GWAS Model Performance Across Heritability and Significance Thresholds
- Quantile-Quantile (QQ) Plot Analysis
- Power Comparison Across GWAS Models at High Heritability
- Comparison of GWAS Model Performance at 50 and 100 QTLs
Discussion
- Future prospects
Acknowledgements
References
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| Model | Trait1_h2_0.3 | Trait1_h2_0.5 | Trait1_h2_0.8 | Trait2_h2_0.3 | Trait2_h2_0.5 | Trait2_h2_0.8 |
|---|---|---|---|---|---|---|
| GLM | 1.292 | 3.496 | 2.098 | 1.429 | 2.979 | 1.933 |
| MLM | 0.986 | 1.001 | 0.986 | 0.99 | 1.023 | 0.972 |
| CMLM | 0.968 | 1.001 | 0.986 | 0.99 | 1.023 | 1.019 |
| ECMLM | 0.986 | 1.001 | 0.986 | 0.99 | 1.023 | 0.972 |
| SUPER | 1.01 | 1.439 | 2.85 | 1.225 | 1.046 | 1.475 |
| MLMM | 0.924 | 1.005 | 0.991 | 0.986 | 1.004 | 1.004 |
| FarmCPU | 0.938 | 0.821 | 0.87 | 0.883 | 0.944 | 0.796 |
| BLINK | 1.134 | 0.972 | 1.047 | 0.958 | 1.01 | 0.876 |
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