Submitted:
21 January 2025
Posted:
21 January 2025
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Abstract
Keywords:
1. Introduction
2. The Predictive Method for HB Interaction Free Energies
3. Results
4. Discussion
5. Conclusions
Supplementary Materials
Conflicts of Interest
References
- Zuburtikudis, I.; Acree, W.E.; Panayiotou, C. Prediction of hydrogen-bonding interaction energies with new COSMO-based molecular descriptors. J. Mol. Liquids 2024, in Press.
- Hirata, F. 2020. Exploring Life Phenomena with Statistical Mechanics of Molecular Liquids. Boca Raton, FL, CRC Press.
- Joesten, M.D. Schaad, L. 1974. Hydrogen bonding, Marcel Dekker, New York.
- Gilli G, Gilli P. 2009. The Nature of the Hydrogen Bond. Oxford, Oxford University Press.
- Baev, A.K. 2014. Specific Intermolecular Interactions of Nitrogenated and Bioorganic Compounds, Springer-Verlag Berlin Heidelberg.
- Goodsell, D.S. 2003. Bionanotechnology: Lessons from Nature. Wiley & Sons, New York.
- Car, R.; Parrinello, M. Unified approach for molecular dynamics and density functional theory. Physical review letters 1985, 55, 2471. [Google Scholar] [CrossRef] [PubMed]
- Silvestrelli, P.L. ; M Parrinello, Structural, electronic, and bonding properties of liquid water from first principles. The Journal of chemical physics 1999, 111, 3572–3580. [Google Scholar] [CrossRef]
- Sapir, L.; Harries, D. Revisiting Hydrogen Bond Thermodynamics in Molecular Simulations, J. Chem. Theory Comput. 2017, 13, 2851–2857. [Google Scholar] [CrossRef] [PubMed]
- Matos, G.D.R.; Kyu, D.Y.; Loeffler, H.H.; Chodera, J.D.; Shirts, M.R.; Mobley, D.L. Approaches for Calculating Solvation Free Energies and Enthalpies Demonstrated with an Update of the FreeSolv Database. J. Chem. Eng. Data 2017, 5, 1559–1569. [Google Scholar] [CrossRef]
- Tillotson, M.J.; Diamantonis, N.I.; Buda, C.; Bolton, L.W.; Mu, E.A. Molecular modelling of the thermophysical properties of fluids: expectations, limitations, gaps and opportunities. Phys. Chem. Chem. Phys. 2023, 25, 12607. [Google Scholar] [CrossRef]
- Vera, J.H., Wiltzek – Vera, G., Oliveira Fuentes, C., Panayiotou, C. 2024. Classical and Molecular Thermodynamics of Fluid Systems, Boca Raton, CRC Press.
- Dolezalek, F. Zur theorie der binaren gemische und konzentrierten losungen. Z. Physick. Chem. 1908, 64, 727–747. [Google Scholar] [CrossRef]
- Katritzky, D.; Fara, E.; Yang, H.; Tamm, K.; Tamm, T.; Karelson, M. Quantitative Measures of Solvent Polarity, Chem. Rev. 2004, 104, 175–198. [Google Scholar]
- Laurence, C.; J-F Gal, J.-F. Lewis Basicity and Affinity Scales: Data and Measurements, Wiley, New York, 2010.
- Sedov, L.A.; Solomonov, B.N. Hydrogen bonding in neat aliphatic alcohols: The Gibbs free energy of self-association and molar fraction of monomer. J. Mol. Liq. 2012, 167, 47–51. [Google Scholar] [CrossRef]
- Sinha, S.; Yang Ch Wu, E.; Acree, W.E. Abraham Solvation Parameter Model: Examination of Possible Intramolecular Hydrogen-Bonding using calculated solute descriptors. Liquids 2022, 2, 131–146. [Google Scholar] [CrossRef]
- Moriguchi, I. Quantitative Structure-Activity Studies I. Parameters Relating to Hydrophobicity. Chem. Pharm. Bull. 1975, 23, 247–257. [Google Scholar] [CrossRef]
- Kamlet, M.J.; Abboud, J.L.M.; Taft, R.W. An Examination of Linear Solvation Energy Relationships, Proc. Phys. Org. Chem. 1981, 13, 485–630. [Google Scholar]
- Kamlet, M.J.; Doherty, R.M.; Abboud, J.-L.; Abraham, M.H.; Taft, R.W. Solubility: a new look. Chemtech 1986, 16, 566–576. [Google Scholar]
- Abraham, M.H.; Doherty, R.M.; Kamlet, M.J.; Taft, R.W. A new look at acids and bases. Chemical. Brit. 1986, 22, 551–554. [Google Scholar]
- Kamlet, M.J.; Doherty, R.M.; Abraham, M.H.; Veith, G.D.; Abraham, D.J.; Taft, R.W. Solubility Properties in Polymers and Biological Media. 8. An Analysis of the Factors that Influence Toxicities of Organic Nonelectrolytes to the Golden Orfe Fish (Leuciscus idus melanotus). Environ. Sci. Technol. 1987, 21, 149–155. [Google Scholar] [CrossRef]
- Schu¨urmann, G. Quantitative Structure-Property Relationships for the Polarizability, Solvatochromic Parameters and Lipophilicity. Quant. Struct.- Act. Relat. 1990, 9, 326–333. [Google Scholar] [CrossRef]
- Dohnal, V. New QSPR molecular descriptors based on low-cost quantum chemistry computations using DFT/COSMO approach, J. Mol. Liq. 2024, 407, 125256. [Google Scholar] [CrossRef]
- Kontogeorgis, G.M, Folas, G.K. 2010. Thermodynamic Models for Industrial Applications. From Classical and Advanced Mixing Rules to Association Theories. Chichester, U.K., John Wiley and Sons, Ltd.
- Wilson, L.Y.; Famini, G.R. Using Theoretical Descriptors in Quantitative Structure-Activity Relationships: Some Toxicological Indices. J. Med. Chem. 1991, 34, 1668–1674. [Google Scholar] [CrossRef]
- Dearden, J. C.; Ghafourian, T. 1995. Investigation of Calculated Hydrogen Bonding Parameters for QSAR. In QSAR and Molecular Modelling: Concepts, Computational Tools and Biological Applications; Sanz, F., Giraldo, J., Manaut, F., Eds.; Prous Science Publishers: Barcelona, pp 117-119.
- Abraham, M.H.; McGowan, J.C. The use of characteristic volumes to measure cavity terms in reversed phase liquid chromatography, Chromatographia 1987, 23, 243–246.
- Abraham, M.H. Scales of solute hydrogen-bonding: their construction and application to physicochemical and biochemical processes, Chem. Soc. Rev. 1993, 22, 73–83. [Google Scholar] [CrossRef]
- Abraham, M.H.; Ibrahim, A.; Zissimos, A.M. Determination of sets of solute descriptors from chromatographic measurements, J. Chromatogr. A 2004, 1037, 29–47. [Google Scholar] [CrossRef]
- Abraham, M.H.; Smith, R.E.; Luchtefeld, R.; Boorem, A.J.; Luo, R.; Acree Jr, W.E. Prediction of solubility of drugs and other compounds in organic solvents, J. Pharm. Sci. 2010, 99, 1500–1515. [Google Scholar] [CrossRef]
- Goss, K.-U. Predicting the equilibrium partitioning of organic compounds using just one linear solvation energy relationship (LSER). Fluid Phase Equilibr. 2005, 233, 19–22. [Google Scholar] [CrossRef]
- Mintz, C.; Ladlie, T.; Burton, K.; Clark, M.; Acree, W.E., Jr.; Abraham, M.H. Enthalpy of solvation correlations for gaseous solutes dissolved in alcohol solvents based on the Abraham model. QSAR Comb. Sci. 2008, 27, 627–635. [Google Scholar] [CrossRef]
- Endo, S.; Watanabe, N.; Ulrich, N.; G Bronner, K-U. Goss, UFZ-LSER database v 2.1 [Internet], Leipzig, Germany, Helmholtz Centre for Environmental Research-UFZ, 2015. [last accessed on 12.11.2024], available from https://www.ufz.de/index.php?en= 31698& contentonly=1&m=0&lserd_data[mvc]=Public/start.
- Mintz, C.; Ladlie, T.; Burton, K.; Clark, M.; Acree, W.E., Jr.; Abraham, M.H. Enthalpy of solvation correlations for gaseous solutes dissolved in alcohol solvents based on the Abraham model. QSAR Comb. Sci. 2008, 27, 627–635. [Google Scholar] [CrossRef]
- Raevsky, O. A.; Grigor’ev, V.; Mednikova, E. 1993. QSAR H-Bonding Descriptions. In Trends in QSAR and Molecular Modelling 92; Wermuth, C. G., Ed.; ESCOM: Leiden. pp 116-119.
- Panayiotou, C. Quantum Chemical (QC) Calculations and Linear Solvation Energy Relationships (LSER): Hydrogen-Bonding Calculations with New QC-LSER Molecular Descriptors. Liquids 2024, 3125552. [Google Scholar] [CrossRef]
- Klamt, A. Conductor-like Screening Model for Real Solvents: A New Approach to the Quantitative Calculation of Solvation Phenomena. J. Phys. Chem. 1995, 99, 2224–2235. [Google Scholar] [CrossRef]
- Klamt, A. 2005. COSMO-RS from Quantum Chemistry to Fluid Phase Thermodynamics and Drug Design; Amsterdam: Elsevier.
- Lin, S.T.; Sandler, S.I. A priori phase equilibrium prediction from a segment contribution solvation model. Ind. Eng. Chem. Res. 2002, 41, 899–913. [Google Scholar] [CrossRef]
- Grensemann, H.; Gmehling, J. Performance of a conductor-like screening model for real solvents model in comparison to classical group contribution methods. Ind. Eng. Chem. Res. 2005, 44, 1610–1624. [Google Scholar] [CrossRef]
- Pye, C.C.; Ziegler, T.; van Lenthe, E.; Louwen, J.N. An implementation of the conductor-like screening model of solvation within the Amsterdam density functional package, Part II. COSMO for real solvents. Can. J. Chem. 2009, 87, 790–797. [Google Scholar] [CrossRef]
- Klamt, A.; Eckert, F.; Arlt, W. COSMO-RS: An alternative to simulation for calculating thermodynamic properties of liquid mixtures. Annual Review of Chemical and Biomolecular Engineering 2010, 1, 101–122. [Google Scholar] [CrossRef]
- COSMObase, ver. 2019, COSMOlogic GmbH &CoKG (now, BIOVIA Dassault Systemes).
- Bell, I.A.; Mickoleit, E.; Hsieh, C.-M.; Lin, S.-T.; Vrabec, J.; Breitkopf, C.; Jager, A. A Benchmark Open-Source Implementation of COSMO-SAC, J. Chem. Theory Comput. 2020, 16, 2635–2646. [Google Scholar] [CrossRef]
- TURBOMOLE V7.5 2020, a development of University of Karlsruhe and Forschungszentrum Karlsruhe GmbH, 1989–2007, TURBOMOLE GmbH, since 2007; available from http://www.turbomole.com.
- https://www.3ds.com/products/biovia/materials-studio.
- https://www.scm.com/product/cosmo-rs/.
- Tsivintzelis, I.; Kontogeorgis G, Μ.; Panayiotou, C. Dimerization of carboxylic acids: An equation of state approach. J. Phys. Chem. B 2017, 121, 2153–2163. [Google Scholar] [CrossRef] [PubMed]
- Abbott, S., Yamamoto, H., Hansen, C.M. 2010. Hansen Solubility Parameters in Practice, Complete with software, data and examples, third ed.-version 3.1.20. Book and Software published by Hansen-Solubility.com.
- Mastrogeorgopoulos, S.; Hatzimanikatis, V.; Panayiotou, C. Toward a Simple Predictive Molecular Thermodynamic Model for Bulk Phases and Interfaces, Ind. Eng. Chem. Res. 2017, 56, 10900–10910. [Google Scholar] [CrossRef]
- Panayiotou, C.; Zuburtikudis, I.; Abu Khalifeh, H. Linear Solvation Energy Relationships (LSER) and Equation-of-State Thermodynamics: On the Extraction of Thermodynamic Information from LSER Database. Liquids 2023, 3, 66–89. [Google Scholar] [CrossRef]
- Qiu, X.; Li, H.; Ver Steeg, G.; Godzik, A. Advances in AI for Protein Structure Prediction: Implications for Cancer Drug Discovery and Development. Biomolecules 2024, 14, 339. [Google Scholar] [CrossRef]
- Pereyaslavets, L.; Kamath, G.; Butin, O.; Illarionov, A.; Olevanov, M.; Kurnikov, I.; Leontyev, I.; Voronina, E.; Gannon, T.; Nawrocki, G.; Darkhovskiy, M.; Ivahnenko, I.; Kostikov, A.; Scaranto, J.; Kurnikova, M.G.; Banik, S.; Chan, H.; Sternberg, M.G.; Sankaranarayanan, S.K.R.S.; Crawford, B.; Potoff, J.; Levitt, M.; Kornberg, R.D.; Fain, B. Accurate determination of solvation free energies of neutral organic compounds from first principles. Nature Communications 2022. [Google Scholar] [CrossRef] [PubMed]
- Jumper, J.; Evans, R.; Pritzel, A.; Green, T.; Figurnov, M.; Ronneberger, O.; Tunyasuvunakool, K.; Bates, R.; Žídek, A.; Potapenko, A.; et al. Highly accurate protein structure prediction with AlphaFold. Nature 2021, 596, 583–589. [Google Scholar] [CrossRef]







| SOLUTE | kJ/mol | kJ/mol | ![]() |
δhb [50] MPa0.5 |
![]() |
| METHANOL | 27.52 | 13.32 | 40.7 | 22.3 | 25.1 |
| ETHANOL | 25.07 | 12.13 | 58.5 | 19.4 | 19.8 |
| 1-PROPANOL | 24.76 | 11.98 | 75.2 | 17.4 | 17.4 |
| 1-BUTANOL | 24.96 | 12.08 | 91.5 | 15.8 | 15.8 |
| 1-PENTANOL | 24.86 | 12.03 | 108.6 | 13.9 | 14.5 |
| 1-HEXANOL | 25.06 | 12.13 | 124.9 | 12.5 | 13.6 |
| 1-HEPTANOL | 24.86 | 12.03 | 141.4 | 11.7 | 12.7 |
| 1-OCTANOL | 24.25 | 11.73 | 157.7 | 11.9 | 11.8 |
| 1-NONANOL | 24.76 | 11.98 | 174.4 | 10.6 | 11.4 |
| 1-DECANOL | 25.17 | 12.18 | 191.8 | 10.0 | 11.0 |
| 2-METHYL-1-PROPANOL | 22.07 | 10.68 | 92.8 | 15.9 | 14.6 |
| 2-METHYL-1-BUTANOL | 21.59 | 10.45 | 109.5 | 14.3 | 13.2 |
| 3-METHYL-1-BUTANOL | 24.55 | 11.88 | 109.3 | 13.3 | 14.3 |
| 2-ETHYL-1-HEXANOL | 21.31 | 10.31 | 156.6 | 11.8 | 11.0 |
| ISOPROPANOL | 25.16 | 12.10 | 76.9 | 16.4 | 17.3 |
| 2-METHYL-2-PROPANOL | 21.91 | 10.54 | 92.8 | 14.2 | 14.5 |
| 2-BUTANOL | 22.64 | 10.66 | 92.0 | 14.5 | 14.8 |
| 2-PENTANOL | 22.54 | 10.61 | 109.6 | 13.3 | 13.5 |
| 2-HEXANOL | 22.95 | 10.80 | 126.1 | 10.6 | 12.7 |
| 2-METHYL-2-BUTANOL | 19.95 | 9.39 | 109.6 | 13.3 | 12.5 |
| 4-METHYL-2-PENTANOL | 22.23 | 10.46 | 127.2 | 12.3 | 12.4 |
| CYCLOHEXANOL | 23.87 | 11.55 | 106.0 | 13.5 | 14.3 |
| 1-METHYLCYCLOHEXANOL | 17.87 | 8.04 | 123.4 | 12.5 | 10.9 |
| BENZYL ALCOHOL | 21.09 | 10.21 | 103.6 | 13.7 | 13.4 |
| PHENOL | 14.78 | 7.15 | 87.5 | 14.9 | 11.6 |
| o-CRESOL | 12.61 | 6.10 | 104.0 | 10.3 | 9.5 |
| m-CRESOL | 15.27 | 7.39 | 104.7 | 12.9 | 10.8 |
| p-CRESOL | 15.65 | 7.57 | 105.8 | 13.8 | 13.4 |
| p-ETHYLPHENOL | 8.56 | 4.14 | 118.6 | 12.8 | 6.90 |
| THYMOL | 10.64 | 5.15 | 166.9 | 10.8 | 6.7 |
| ACETIC ACID | 26.98 | 16.98 | 57.1 | 13.5 | 21.4 |
| PROPIONIC ACID | 25.54 | 16.08 | 75.0 | 12.4 | 18.1 |
| n-BUTYRIC ACID | 25.41 | 16.00 | 110.0 | 10.6 | 14.9 |
| n-PENTANOIC ACID | 25.27 | 15.90 | 109.2 | 10.3 | 14.9 |
| n-HEXANOIC ACID | 25.72 | 16.19 | 125.9 | 9.4 | 14.0 |
| ACRYLIC ACID | 25.43 | 16.00 | 68.5 | 14.9 | 18.9 |
| BENZOIC ACID | 21.91 | 13.79 | 100.0 | 9.8 | 14.4 |
| METHYLAMINE | 6.56 | 5.20 | 44.4 | 17.3 | 10.2 |
| ETHYLAMINE | 9.60 | 4.60 | 65.6 | 10.7 | 9.9 |
| n-PROPYLAMINE | 9.77 | 4.68 | 83.0 | 8.6 | 8.9 |
| ISOPROPYLAMINE | 8.67 | 4.16 | 86.8 | 6.6 | 8.1 |
| n-BUTYLAMINE | 9.47 | 4.54 | 99.0 | 8.0 | 8.0 |
| n-PENTYLAMINE | 9.52 | 4.56 | 116.1 | 7.2 | 7.4 |
| n-HEXYLAMINE | 9.59 | 4.59 | 133.0 | 6.5 | 7.0 |
| n-HEPTYLAMINE | 9.59 | 4.59 | 149.3 | 5.9 | 6.6 |
| n-OCTYLAMINE | 9.62 | 4.61 | 165.9 | 5.2 | 6.3 |
| DIMETHYLAMINE | 5.53 | 2.62 | 66.2 | 11.2 | 6.8 |
| DIETHYLAMINE | 3.33 | 1.58 | 103.2 | 6.1 | 4.0 |
| DI-n-PROPYLAMINE | 3.10 | 1.47 | 136.9 | 4.1 | 3.3 |
| ANILINE | 11.29 | 5.41 | 91.5 | 10.2 | 9.4 |
| FORMAMIDE | 20.69 | 23.05 | 39.8 | 19 | 22.7 |
| ACETAMIDE | 19.97 | 22.25 | 60.8 | 22.4 | 18.0 |
| N-METHYL FORMAMIDE | 10.69 | 11.91 | 59.1 | 15.9 | 12.9 |
| DIMETHYL SULFOXIDE | 2.16 | 0.93 | 71.3 | 10.2 | 3.7 |
| N,N-DIMETHYLFORMAMIDE | 0.00 | 0.00 | 77.0 | 11.3 | 0.0 |
| ACETONITRILE | 2.50 | 1.07 | 52.6 | 6.1 | 4.7 |
| PROPIONITRILE | 0.66 | 0.28 | 70.9 | 5.5 | 1.9 |
| ACRYLONITRILE | 2.61 | 1.12 | 67.1 | 6.8 | 4.2 |
| 2-METHOXYETHANOL c0 | 21.34 | 10.34 | 79.1 | 16.4 | 15.4 |
| 2-ETHOXYETHANOL solvent / solute | 17.53 | 8.50 | 97.8 | 14.3 | 12.2 |
| 2-ETHOXYETHANOL self-solv | 21.00 | 9.45 | 97.8 | 14.3 | 13.6 |
| 2-BUTOXYETHANOL | 18.51 | 8.97 | 131.6 | 12.3 | 10.9 |
| ETHYLENE GLYCOL solvent | 39.54 | 25.42 | 55.8 | 26 | 26.5 |
| ETHYLENE GLYCOL solute | 51.40 | 33.04 | 55.8 | 26 | 30.3 |
| 1,2-PROPYLENE GLYCOL solvent | 41.60 | 22.02 | 73.6 | 23.3 | 23.6 |
| 1,2-PROPYLENE GLYCOL solute | 56.49 | 29.90 | 73.6 | 23.3 | 27.7 |
| DIETHYLENE GLYCOLsolute | 59.58 | 26.81 | 94.9 | 20.7 | 25.0 |
| DIETHYLENE GLYCOL (self)solvent | 41.08 | 18.34 | 94.9 | 20.7 | 20.5 |
| DIPROPYLENE GLYCOL | 42.22 | 26.39 | 130.9 | 17.7 | 17.9 |
| TRIETHYLENE GLYCOL solute | 78.14 | 24.05 | 114.0 | 18.6 | 26.1 |
| TRIETHYLENE GLYCOL self-solvation | 40.07 | 8.11 | 114.0 | 18.6 | 17.0 |
| GLYCEROL | 83.77 | 38.67 | 73.3 | 29.3 | 33.8 |
| HYDROGEN PEROXIDE | 40.10 | 20.46 | 23.2 | 42.7 | 41.2 |
| WATER | 40.75 | 28.78 | 18.0 | 42.3 | 47.5 |
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