Submitted:
27 September 2024
Posted:
30 September 2024
Read the latest preprint version here
Abstract
Keywords:
1. Introduction
2. Methods
2.1. Sample and Procedures
2.2. Features
2.2.1. Demographic and Clinical Data Including Inflammatory Markers
2.2.2. Telomere Length (TL) Measurement
2.2.3. Social Determinants of Health (SDOH)
2.3. Outcome
2.3.1. GI Health
2.4. Data Analyses
2.4.1. Initial Data Analysis
2.4.2. Machine Learning Model
2.5. Conceptual Framework
3. Results
3.1. Initial Descriptive Analyses
3.1.1. Participant Characteristics, Clinical Data Including Inflammatory Markers, TL, and GI Health
3.1.2. SDOH Variables
3.1.3. Potential Risk Factors for GI Health within the Training Dataset
3.2. Machine Learning Models for GI Health
3.2.1. Performance Comparison for Classification Models
3.2.2. Feature Importance
4. Discussion
5. Conclusions
Supplementary Material
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Total cancer survivors (N = 645) |
Training seta (n = 75% of total sample, n = 484 |
Test setb (n = 25% of total sample, n = 161) |
p | GI health (n, %) | ||
|---|---|---|---|---|---|---|
| Better | Worse | p | ||||
| Age (years) mean ± SE, range |
66.3 ± 14.7 (21-85) | 65.5 ± 16.2 (22-85) | .102 | 63.3 (10.9) | 66.4 (11.2) | 47.4, .031 |
| Female (n,%) | 235 (49.5) | 84 (50.7) | .311 | 153 (47) | 103(65) | 6.1, .013 |
| Modified Comorbidities(>2)(n,%) | 168 (42.3) | 66 (43.2) | .122 | 133(41) | 71 (45) | 5.4, .043 |
| Types of Cancers (n,%) |
Skin: 152 (21.2) GU: 102 (21.0) Breast: 75 (15.6) Ovary-Uterine: 45 (9.3) Head & Neck: 42 (8.6) GI: 41 (8.4) Lung: 15 (3.1) Hematological: 12(2.5) |
Skin: 44 (27.3) Breast: 35 (21.7) GU: 30 (18.6) Head & Neck: 21(13.0) GI: 15 (9.3) Ovary-Uterine: 8 (5.0) Lung: 5 (3.1) Hematological: 3 (1.9) |
.143 | Skin: 65 (20.1) GU: 62 (19) Breast: 53 (16.3) Ovary-Uterine: 37 (11.3) Head & Neck: 31 (9.5) GI: 27 (8.5) Lung:13 (4.1) Hematological: 36 (11.2) |
Skin: 31(19.8) GU: 26 (16.2) Breast:27(17.3) Ovary-Uterine: 18(11.5) Head & Neck: 17 (10.9) GI: 15 (9.3) Lung: 8 (5.2) Hematological 15 (9.8) |
12.1, .100 |
| WBC (k/ul), normal (4 -11k/ul), mean ± SE |
7.0 (2.1) | 7.04 (2.0) | .192 | 5.4 (1.1) | 8.5 (1.5) | 146.3, .046 |
| CRP (mg/dl), normal (<0.3mg/dl), mean ± SE | 0.5 (0.9) | 0.6 (1.4) | .124 | 0.4 (0.8) | 1.0 (1.1) | 238.4, .001 |
| Telomere Lengths (kb) mean ± SE |
0.93 (0.2) | 0.93 (0.2) | .823 | 0.97 (0.2) | 0.64 (0.3) | 85.1, .013 |
| Gastrointestinal Health (n, %) |
Worse: 158 (32.5) Better: 324 (66.7) |
Worse: 59 (36.6) Better: 101 (62.7) |
.412 | Not applicable | ||
| Total cancer survivors (N = 645). n (%) otherwise specified |
Training seta (n = 75% of total sample, n = 484 |
Test setb (n = 25% of total sample, n = 161) |
p | GI Health (n, %) | ||||
|---|---|---|---|---|---|---|---|---|
| Better | Worse | p | ||||||
| Race/Ethnicity | .413 | 24.2, .039 | ||||||
| Non-Hispanic White | 356 (73.3) | 121(75.0) | 260 (80.3) | 122 (77.3) | ||||
| Non-Hispanic Black | 53 (10.9) | 18 (11.0) | 35 (10.7) | 17 (10.5) | ||||
| Non-Hispanic Other | 6 (1.2) | 2 (1.2) | 5 (1.5) | 2 (1.5) | ||||
| Hispanic | 69(14.2) | 20 (12.8) | 24 (7.5) | 17 (10.7) | ||||
| Marital status | .541 | 3.6, .730 | ||||||
| Married/Partnered | 329 (68.1) | 110 (68.3) | 220(67.9) | 104 (65.6) | ||||
| Divorced/Widowed/Single | 155 (31.9) | 51 (31.7) | 104(32.1) | 54 (34.4) | ||||
| Education | .112 | 16.6, .502 | ||||||
| High school or less | 247 (51.0) | 80 (49.7) | 158(48.8) | 81 (51.1) | ||||
| College of technical school | 130 (26.9) | 44 (27.3) | 88 (27.1) | 41 (25.8) | ||||
| Graduate school | 107 (22.1) | 37 (23.0) | 78 (24.1) | 36 (23.1) | ||||
| Household Income (yr.) | .353 | 8.43, .038 | ||||||
| Less than $25,000 | 169 (34.9) | 57 (35.4) | 114(35.3) | 58 (36.8) | ||||
| $25,000 to <$55,000 | 150 (31.0) | 51 (31.7) | 100(31.0) | 45 (28.3) | ||||
| $55,000 to <$75,000 | 45 (9.2) | 17 (10.6) | 50 (15.4) | 26 (16.4) | ||||
| $75,000 and over | 107 (22.1) | 33 (20.5) | 59 (18.3) | 29 (18.5) | ||||
| Poverty-income ratio (PIR) <1 indicating a high poverty level (Yes): Annual household income below the poverty level. | 193 (39.7) | 60 (37.3) | .423 | 113(34.9) | 59 (37.6) | 18.01,<.001 | ||
| Food Insecurity (Yes) | 42 (8.6) | 13 (8.1) | .879 | 18 (5.6) | 13 (8.0) | 17.01, .021 | ||
| Cancer Health Behaviors (Yes) | ||||||||
| Current Smoking Status | 86 (17.7) | 31 (19.3) | .114 | 53 (16.3) | 31 (19.5) | 13.1, .080 | ||
| Current Heavy Alcohol Use | 86 (17.7) | 21 (13.0) | .198 | 49 (15.2) | 34 (21.3) | 37.01,<.001 | ||
| Regular physical activity | 286 (58.8) | 76 (47.2) | .108 | 189(58.3) | 61 (38.5) | .52.4, .035 | ||
| Diet quality(HEI-2015 Score, 0-100, mean ± SE) |
48.8 (12.3) | 48.9 (8.3) | .103 | 52.5 (5.6) | 47.3 (7.5) | 56.1, .038 | ||
| Model | AUC | Accuracy | Precision | Sensitivity (Recall) |
Specificity | F1 Score |
| Training Dataset | ||||||
| LR | 0.7918 | 0.7192 | 0.7214 | 0.8978 | 0.4197 | 0.8111 |
| SVM | 0.7994 | 0.7112 | 0.7753 | 0.7585 | 0.6321 | 0.7668 |
| Decision Tree | 0.9758 | 0.9089 | 0.9340 | 0.9195 | 0.8912 | 0.9267 |
| RF | 0.9842 | 0.9341 | 0.9213 | 0.9783 | 0.8601 | 0.9489 |
| GBM | 0.8952 | 0.7907 | 0.7867 | 0.9133 | 0.5855 | 0.8453 |
| XGBoost | 0.7829 | 0.7755 | 0.9195 | 0.5544 | 0.5544 | 0.8414 |
| Test Dataset | ||||||
| LR | 0.7904 | 0.7287 | 0.7447 | 0.8642 | 0.5312 | 0.8312 |
| SVM | 0.7774 | 0.7054 | 0.7792 | 0.7407 | 0.6458 | 0.7595 |
| Decision Tree | 0.6480 | 0.6512 | 0.7093 | 0.7531 | 0.4792 | 0.7305 |
| RF | 0.7760 | 0.7364 | 0.7640 | 0.8395 | 0.5625 | 0.8000 |
| GBM | 0.8035 | 0.7442 | 0.7609 | 0.8642 | 0.5417 | 0.8092 |
| XGBoost | 0.7834 | 0.7287 | 0.7500 | 0.8519 | 0.5208 | 0.7977 |
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