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Analysis of MLKL, RIP1, and RIP3 Immunostaining Markers in Human Liver Tissue from Fatal Yellow Fever Cases: Insights into Necroptosis

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20 August 2024

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22 August 2024

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Abstract
Necroptosis is a regulated form of cell death implicated in several pathological conditions, in-cluding viral infections. In this study, we investigated the expression and correlation of necroptosis markers, MLKL, RIP1 and RIP3, in human liver tissue from fatal cases of yellow fever (YF) using immunohistochemistry (IHC). Liver samples were obtained from 21 YF-positive individuals and five flavivirus-negative controls with preserved liver parenchymal architecture. The cases un-derwent histopathological analysis, followed by tissue immunostaining with the immuno-histochemical method of streptavidin-biotin peroxidase. Using the in situ method, we evaluated the centrilobular (Z3), midzonal (Z2), periportal zone and portal tract (PT) zones of human liver parenchyma with markers for necroptosis, RIPK1, RIPK3 and MLKL. Quantitative analysis re-vealed significantly higher expression of MLKL, RIP1 and RIP3 in the liver parenchyma of YF cases compared to controls in different zones (Z3, Z2, Z1) and portal tracts (PT) of the liver, especially in zone 2. Immunostaining confirmed the localization of MLKL, RIP1 and RIP3 in hepatocytes and inflammatory infiltrates, highlighting their involvement in the pathogenesis of YF. Pearson's correlation analysis demonstrated significant correlations between necroptosis markers which indicate their coordinated regulation during YF-induced liver injury.
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1. Introduction

Yellow fever (YF) is an arboviral disease transmitted by hematophagous mosquitoes that can present a spectrum of clinical manifestations ranging from asymptomatic cases to severe forms with hemorrhage. It is a disease transmitted by mosquitoes infected with Yellow Fever Virus (YFV) belonging to the Flavivirus genus, in Africa and is maintained in wild cycles by non-human primates (NHP) and hematophagous arthropods of the Haemagogus and Sabethes genera in South America. Its lethality ranges from 20% to 50% [1].
The urban cycle encompasses Aedes aegypti and human interactions, posing the most significant public health concern. The resurgence of this urban cycle in the Americas, coupled with vulnerable human populations, has raised alarms among public health authorities. This is primarily due to inadequate vaccination coverage in both non-endemic and endemic regions [1,2,3,4]. After the virus enters the human body through the bite of the transmitting mosquito, it quickly reaches the lymph nodes and spreads into the bloodstream. Viral replication begins in the lymph nodes. After the release of virions into the bloodstream, a period known as viremia, organs such as the liver, kidneys and spleen, for example, are also infected [6,7,8].
Apoptosis and necrosis have long been considered the main processes of cell death in YF infection, but it is believed that necroptosis may play an important role in the cell death of hepatocytes [9,10,11]. Necroptosis, a recently recognized type of programmed cell death, contributes to inflammation and various diseases such as cancer, stroke, and kidney disease [12]. When triggered by various stimuli, necroptosis is initiated by the activation of receptor-interacting protein kinase 1 (RIP1). Activated RIP1 interacts with RIP3 through their RIP homotypic interaction motifs, phosphorylates RIP3, and forms an RIP1/RIP3 complex called the necrosome [13]. Then, mixed lineage kinase domain-like protein (MLKL) is recruited and phosphorylated by RIP3 in the necrosome [14]. Phosphorylated MLKL monomers aggregate to form oligomers and translocate to the plasma membrane to execute necroptosis [14,15].
Although multiple cell death pathways are involved in YF, including apoptosis and necrosis, the effect of necroptosis remains largely unknown [2,11,16,17,18,19]. In this study, our aim was to explore the activation of necroptosis in YF and identify the role of RIP1/RIP3/MLKL-mediated necroptosis in human liver tissue.

2. Materials and Methods

2.1. Patients, Samples, and Diagnosis of Yellow Fever Infection

This study used 26 human liver biopsies. Among them, 21 samples of fatal cases of YF were confirmed through positive results for the virus by reverse transcriptase reaction followed by polymerase chain reaction (RT-PCR) and immunohistochemistry, one or both. In addition, five control samples from patients with preserved liver architecture tested negative for YF and other Flaviviruses circulating in Brazil, according to the death verification service (Renato Chaves Scientific Expertise Center) in the city of Belém in the state of Pará, Brazil. The confirmation of the diagnosis for the positive cases of YF was based on the study by Olimpio et al. [16], including histopathological, immunohistochemical, and Real-time quantitative RT-PCR (RT-qPCR) analysis. For histopathological diagnosis, the paraffin-embedded biopsies were cut into 5μm sections and stained with the hematoxylin-eosin method. Table 1 shows detailed information about the patients included in this study.

2.2. Ethics Statement

Patient samples were obtained and processed as part of the response measures to the surveillance of the YFV epidemic in Brazil on an emergency basis, as defined by the Ministry of Health. This study was approved (No. 2.824.592) by the Research Ethics Committee (CEP) of the Evandro Instituto Chagas (IEC). All methods were performed in accordance with the relevant guidelines and regulations approved by the CEP / IEC and the Brazilian Ministry of Health rules and regulations for studies with biological samples.

2.3. Immunohistochemistry (IHC)

Immunostaining of the hepatic tissues with antibodies specific for MLKL (Abnova, Taiwan, TW, H00197259-M02, dilution 1:50), RIP1 (Abcam, Cambridge, UK, ab72139, dilution 1:50), RIP3 (Abcam, Cambridge, UK, ab152130, dilution 1:50), was performed using the streptavidin-biotin peroxidase immunohistochemical method (SABC) [20] and adapted it according to Olímpio et al., [16]. Briefly, tissue samples were deparaffinized in xylene and hydrated in a decreasing series of ethanol (90%, 80%, and 70%). Liver sections were incubated in 3% hydrogen peroxide for 45 min to block endogenous peroxidase. Incubation in citrate buffer, pH 6.0, for 20 min at 90 °C was realized to recover antigens. Non-specific proteins were blocked by incubating the sections in 10% skim milk for 30 min. Histological sections were then incubated overnight with the primary antibodies diluted in 1% bovine serum albumin (supplementary file). The slides were immersed in 1 × PBS and incubated with the biotinylated secondary antibody (LSAB; DakoCytomation, Glostrup, Denmark) in an oven for 30 min at 37 °C. The slides were immersed in 1 × PBS and incubated with streptavidin peroxidase (LSAB; DakoCytomation) for 30 min at 37 °C. For visualization, specimens were treated with a chromogenic solution (0.03% diaminobenzidine and 3% hydrogen peroxide). Finally, histological sections were washed in distilled water, counterstained with Harris hematoxylin for 1 min, dehydrated in ethanol (70%, 80%, 90%), and deparaffinized in xylene.

2.4. Quantitative Analysis and Photo-Documentation

The markers used to characterize the in-situ inflammasome profile were visualised using an Axio Imager Z1 microscope (Zeiss). Immunostaining results were evaluated quantitatively by randomly selecting ten fields in the hepatic parenchyma (Z3: Pericental zone; Z2: Midzonal zone; Z1: Periportal zone; PT: Portal tract) of the fatal YF or negative control (NC) cases for viewing at high magnification. Each field was subdivided into 10 × 10 areas delimited by a 0.0625 mm2 grid.

2.5. Statistical Analysis

The data were stored in a Microsoft Excel 2016 spreadsheet and analysed using GraphPadPrism 9.0. The numerical variables were expressed as the mean, median, standard deviation, and variance. One-way ANOVA, Tukey’stest, and Pearson correlation were also applied; results were considered statistically significant at p < 0.05.

3. Results

3.1. Expression of RIP1, RIP3 and MLKL in the Hepatic Parenchyma in Fatal Yellow Fever Cases

The expression level of RIP1, RIP3 and MLKL in samples from YF fatal cases showed significant differences compared to the respective controls (Table 2) (Figure 1 and Figure 2). We found that the expressions of receptors were cleaved in response to necroptose activation and were significantly up-regulated compared to the control group. Furthermore, the YFV infection induced high levels of expressions of RIP1, RIP3 and MLKL in hepatocytes (Table 2) (Figure 2).

4. Discussion

The current study provides crucial insights into the expression and correlation of necroptosis markers (MLKL, RIP1, and RIP3) in liver tissue from fatal Yellow Fever (YF) cases, shedding light on the underlying mechanisms of YF pathology. Immunostaining results confirmed the presence of MLKL, RIP1, and RIP3 in hepatocytes and inflammatory infiltr ates (Table 2, Figure 1 and Figure 2). The preservation of hepatic parenchyma and minimal expression of these markers in control cases further support their specific involvement in YF pathology. The quantitative analysis revealed a significant upregulation of these markers in YF cases, particularly in the midzonal zone followed by pericental and periportal zones and inflammatory infiltrate in smaller expressions. (Table 2, Figure 1 and Figure 2). This spatial variation suggests the involvement of necroptosis in liver damage and hepatocyte loss as distinct roles in necroptosis induction and execution during YF infection.
The Pearson correlation analysis revealed significant correlations between MLKL, RIP1, and RIP3 in YF cases (Table 3, Figure 3). The positive correlations between MLKL and RIP1, as well as MLKL and RIP3, indicate their cooperative role in necroptosis signaling. Moreover, the negative correlations observed between MLKL, RIP1, and RIP3 in certain liver zones and portal tracts imply the existence of complex regulatory mechanisms that vary across different tissue microenvironments (Table 3, Figure 3).
Supporting these findings, Vandenabeele et al. (21) demonstrated the crucial role of RIP1 and RIP3 in necroptosis signaling pathways. The study identified RIP1 and RIP3 as key players in the formation of the necrosome complex, which leads to the execution of necroptosis. In our study, we observed significantly higher expression levels of RIP1 and RIP3 markers in liver tissue from fatal YF cases compared to controls. This finding supports the involvement of necroptosis in YF pathogenesis, suggesting that RIP1 and RIP3 may contribute to hepatocellular necroptosis and tissue damage.
Furthermore, Wu et al. (15) highlighted the significance of MLKL in mediating necroptosis-associated inflammation. MLKL is a downstream effector molecule activated by RIP3, leading to plasma membrane disruption and release of intracellular contents, triggering inflammation. During necroptosis, the formation of RIPK1/3 heterodimers gives rise to a complex that triggers the NF-kB-mediated pro-inflammatory response, facilitating the release of cytokines/chemokines [22,23,24]. Additionally, the secretion of damage-associated molecular patterns (DAMPs), such as ATP and HMGB1, is notably heightened during necroptosis [25,26]. As a consequence of these signaling cascades, distinct morphological changes from apoptosis become apparent in necroptosis, including organelle swelling and cellular lysis [27]. As a consequence of these signaling cascades, morphological changes distinct from apoptosis become evident in necroptosis, including organelle swelling and cellular lysis. This specific morphology is discernible in Figure 2 (black arrows), indicating the occurrence of necroptosis in severe yellow fever infection. This is further supported by elevated levels of MLKL expression in the hepatic tissue of fatal yellow fever cases (Table 2, Figure 1), as well as by the positive correlation between MLKL and RIP1/3 expression levels (Table 3, Figure 3).
Review work by Verburg et al. [28] discussed the contribution of RIP3 and MLKL to immunopathology in viral hepatitis. The study demonstrated that the activation of RIP3 and MLKL promotes liver inflammation and tissue damage. Our results are consistent with these findings, as we observed upregulated expression levels of RIP1, RIP3, and MLKL in liver tissue from fatal YF cases. The positive correlations observed between these markers suggest their involvement in promoting hepatocellular necroptosis and inflammation in YF.
Kim et al. [29] discussed the relationship between pyroptosis-induced necroptosis and autophagy-mediated secretion of HMGB1 in inflammatory arthritis. While our study focused on YF, this research provides insights into the crosstalk between different forms of regulated cell death. Necroptosis and pyroptosis share common signaling pathways and may contribute to tissue damage and inflammation [30]. Although our study did not investigate pyroptosis specifically, the findings highlight the complexity of cell death mechanisms in viral infections and their potential impact on disease progression.
Overall, the literature supports our results, indicating the involvement of necroptosis and the upregulation of MLKL, RIP1, and RIP3 markers in liver tissue from fatal YF cases. The positive correlations observed between these markers further reinforce their interplay and potential contribution to hepatocellular necroptosis and tissue damage. Understanding the molecular mechanisms of necroptosis and its association with YF pathogenesis may pave the way for the development of targeted therapies to mitigate liver injury and improve patient outcomes in YF cases.

5. Conclusion

Our study provides quantitative evidence for the upregulation of necroptosis markers MLKL, RIP1, and RIP3 in human liver tissue from fatal YFV cases. The differential expression patterns of these markers in different liver zones and portal tracts suggest a spatially regulated involvement of necroptosis in the pathogenesis of yellow fever. Furthermore, the observed correlations among MLKL, RIP1, and RIP3 expression levels in YFV cases support their cooperative role in necroptosis induction during YFV infection. Further research is needed to elucidate the underlying molecular mechanisms and the potential therapeutic implications of targeting necroptosis in yellow fever.

Author Contributions

V.d.S.C.M., J.R.d.S, J.A.S.Q., and P.F.d.C.V. designed the study; M.L.G.C., J.R.d.S., J.d.C.L., C.C.H.M., F.A.O., C.A.M.d.S., L.C.d.S., F.S.d.S.V., R.d.S.d.S.A., A.C.R.C., V.C.A.G., M.I.S.D., and L.C.M. performed lab tests; M.I.S.D., J.A.S.Q., and P.F.C.V. furnished reagents; L.F.M.F., J.R.d.S., M.I.S.D., J.A.S.Q., and P.F.d.C.V. drafted the manuscript. All authors reviewed the final draft and agree to submit.

Funding

This study was supported by the Brazilian Council for the Scientific and Technologic Development Agency (CNPq) for financial support to PFCV (grants 457664/2013-4 and 303999/2016-0).

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Figure 1. Immunostaining for MLKL (Z3-a, Z2-a, Z1-a), RIP3 (Z3-b, Z2-b, Z1-b), RIP1 (Z3-c, Z2-c, Z1-c), in the hepatocytes (black circles) and PT-a, PT-b, PT-c in the inflammatory infiltrates (black circles). Swollen and immunostained hepatocytes are highlighting in black arrows. Preservation of hepatic parenchyma in control cases and minimal expression of MLKL (a), RIP1 (b), RIP3 (c). 400× magnification (scale: 20 μm). Z3: centrolobular zone; Z2: midzonal zone; Z1: periportal zone; PT: portal tract; NC: normal control.
Figure 1. Immunostaining for MLKL (Z3-a, Z2-a, Z1-a), RIP3 (Z3-b, Z2-b, Z1-b), RIP1 (Z3-c, Z2-c, Z1-c), in the hepatocytes (black circles) and PT-a, PT-b, PT-c in the inflammatory infiltrates (black circles). Swollen and immunostained hepatocytes are highlighting in black arrows. Preservation of hepatic parenchyma in control cases and minimal expression of MLKL (a), RIP1 (b), RIP3 (c). 400× magnification (scale: 20 μm). Z3: centrolobular zone; Z2: midzonal zone; Z1: periportal zone; PT: portal tract; NC: normal control.
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Figure 2. Quantitative analysis for MLKL (A), RIP3 (B) and RIP1 (C) in zones Z3, Z2, Z1 and PT in the liver parenchyma of fatal cases of human YF compared to negative control. Tukey***p<0.0001; ANOVA***p<0.0001.
Figure 2. Quantitative analysis for MLKL (A), RIP3 (B) and RIP1 (C) in zones Z3, Z2, Z1 and PT in the liver parenchyma of fatal cases of human YF compared to negative control. Tukey***p<0.0001; ANOVA***p<0.0001.
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Figure 3. Linear correlation among receptors that characterize the in situ necroptose response in fatal cases YFV. Person correlation;**p < 0.001; ***p < 0.0001.
Figure 3. Linear correlation among receptors that characterize the in situ necroptose response in fatal cases YFV. Person correlation;**p < 0.001; ***p < 0.0001.
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Table 1. Characterization of patients with AF according to gender, age, state, year and duration of disease.
Table 1. Characterization of patients with AF according to gender, age, state, year and duration of disease.
Case Patient Gender Age State Year IT*
1 001/00 M 25 Tocantins 2000 8
2 106/00 M 75 Goiás 2000 NR**
3 108/00 M 49 Goiás 2000 7
4 494/00 M NR** Distrito Federal 2000 NR**
5 251/00 M 16 Mato Grosso do Sul 2000 6
6 252/00 M 49 Goiás 2000 NR**
7 253/00 M 23 Goiás 2000 NR**
8 255/00 M NR** Goiás 2000 NR**
9 291/00 M NR** Goiás 2000 NR**
10 158/00 M 33 Goiás 2000 NR**
11 063/03 M NR** Minas Gerais 2003 NR**
12 339/04 M 36 Amazonas 2004 11
13 019/08 M 64 Goiás 2008 7
14 273/08 M 57 Goiás 2008 7
15 068/08 F 65 Goiás 2008 2
16 095/08 M 42 Goiás 2008 3
17 143/08 M 37 Distrito Federal 2008 NR**
18 361/15 F 53 Rio grande do Norte 2015 4
19 062/16 M 35 Goiás 2016 NR**
20 346/16 M 15 Goiás 2016 7
21 369/16 M 27 Goiás 2016 1
*IT= Illness time/ **NR= No registry.
Table 2. Quantitative analysis of necropose markers in the hepatic parenchyma in fatal YFV cases comparing to control cases. Z3: Pericental zone; Z2: Midzonal zone; Z1: Periportal zone; PT: Portal tract. Z3: Pericentral zone; Z2: Midzonal zone; Z1: Periportal zone; PT: Portal tract. ANOVA one-way; *** p < 0.0001; Tukey; *** p < 0.0001; **p<0.001; *p<0.05.
Table 2. Quantitative analysis of necropose markers in the hepatic parenchyma in fatal YFV cases comparing to control cases. Z3: Pericental zone; Z2: Midzonal zone; Z1: Periportal zone; PT: Portal tract. Z3: Pericentral zone; Z2: Midzonal zone; Z1: Periportal zone; PT: Portal tract. ANOVA one-way; *** p < 0.0001; Tukey; *** p < 0.0001; **p<0.001; *p<0.05.
Markers Z3
(Cells/mm2)
Z2
(Cells/mm2)
Z1
(Cells/mm2)
PT
(Cells/mm2)
ANOVA
(p ≤ 0.05)
RIP1
Control
143.20 ± 21.75
76.80 ± 13.39
350.40 ± 52.40
112.00 ± 25.30
125.70 ± 13.83
48.40 ± 9.94
102.4 ± 11.19
36.80 ± 4.60
***
Tukey (p ≤ 0.05) *** ***. ** *
RIP3
Control
140.2 ± 19.41
59.20 ± 6.57
255.10 ± 90.92
92.80 ± 13.39
107.3 ± 18.87
30.20 ± 4.38
96.33 ± 12.06
22.20 ± 2.68
***
Tukey (p ≤ 0.05) *** *** * *
MLKL
Control
147.80 ± 19.53
60.80 ± 17.53
318.50 ± 63.38
108.80 ± 28.62
109.70 ± 17.73
51.20 ± 17.53
89.60 ± 11.79
36.00 ± 8.00
***
Tukey (p ≤ 0.05) *** *** ** *
Table 3. Linear correlation between markers of the necroptose in fatal yellow fever cases in moderate to strong correlation. Pearson correlation: ***p<0.0001; **p<0.001; *p<0.05.
Table 3. Linear correlation between markers of the necroptose in fatal yellow fever cases in moderate to strong correlation. Pearson correlation: ***p<0.0001; **p<0.001; *p<0.05.
Correlation r p-value
MLKL Z3 x RIP1 Z3 0.5804 0.0058**
MLKL Z3 x RIP1 Z2 0.7368 0.0007***
MLKL Z3 x RIP1 Z1 0.8037 <0.0001***
MLKL Z2 x RIP1 Z2 0.8212 0.0002***
MLKL Z2 x RIP1 Z1 0.7065 0.0015**
MLKL Z2 x RIP1 PT -0.7586 0.0007***
MLKL Z1 x RIP1 PT -0.7735 0.0001***
MLKL Z3 x RIP3 Z3 0.4726 0.0305*
MLKL Z3 x RIP3 Z2 0.6764 0.0079**
MLKL Z3 x RIP Z1 -0.4788 0.0381*
RIP3 Z2 x MLKL Z2 -0.7330 0.0029*
MLKL Z1 x RIP3 PT -0.7613 <0.0001***
MLKL PT x RIP 3 PT 0.7135 0.0003***
RIP1 Z3 x RIP3 PT -0.5957 0.0044**
RIP1 Z2 x RIP3 Z2 -0.8256 <0.0001***
RIP1 Z2 x RIP3 Z1 -0.8043 0.0002***
RIP1 Z2 x RIP3 PT -0.6483 0.0015**
RIP1 Z1 x RIP3 Z1 -0.5047 0.0327*
RIP1 PT x RIP3 PT -0.7125 0.0004***
RIP1 Z3 x RIP3 Z2 0.4601 0.0475*
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