Submitted:
11 August 2024
Posted:
14 August 2024
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Results
2.1. Phenotypic Characterization
2.2. Genotypic Characterization
2.3. Characterization of the Identified Variants in NR5A1/SF-1, NR1H2 and INHA
2.4. In Vitro Functional Testing of Selected Variants
4. Materials and Methods
4.1. Participants
4.2. In Silico Analyses and Variant Classification
4.3. Plasmids
4.4. Cloning
4.5. In Vitro Testing of Transactivation Activity by Dual Luciferase Assay
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Hormones/Markers | Biochemical value | Range | Units |
|---|---|---|---|
| Sex hormones | |||
| FSH | 85.1 | 0.95 – 11.95 | mU/ml |
| LH | 20.3 | 0.57 – 12.07 | mU/ml |
| Prolactin | 29.1 | 3.46 – 19.4 | ng/ml |
| Testosterone | 4.15 | 1 – 12 | ng/ml |
| AMH | 5.18 | 27 – 1141 | pM |
| Adrenal function | |||
| ACTH | 53.7 | 9.0 – 40.0 | pg/ml |
| Cortisol | 179 | 30 – 210 | ng/ml |
| DHEA-S | 2243 | 166 – 2427 | ng/ml |
| Gene name | Gene transcript | Variant | Chromosome position | Type/ Consequence |
ACMG classification (criteria) | SIFT | Polyphen | Mutation Taster | Panther | SNPs and Go | M-CAP | Mutation assessor | REVEL | Provean | ORVAL - VarCoPP score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NR5A1 | ENST00000373588.9 | c.58G>C; p.(Val20Leu) | 9:124503338 | SNV/missense | P | Unc | B | Unc | Prdam | Dis | P | Unc | P | Unc | - |
| NR1H2 | ENST00000253727.10 | c.515_516insCAA;p.(Arg171_Lys172insAsn) | 19:50378563 | Ins/In-frame insertion | VUS | ND | ND | ND | ND | ND | ND | ND | ND | ND | ND |
| INHA | ENST00000243786.3 | c.675T>G; p.(Ser225Arg) | 2:219575100 | SNV/missense | B | B | B | B | ND | Dis | Unc | Unc | B | B | 0.5825 |
| TCF7L2 | ENST00000355995.9 | c.1535C>G; p.(Pro512Arg) | 10:113165647 | SNV/missense | LB | B | B | Unc | Prben | Neu | Unc | B | B | B | 0.9825 |
| NIBAN1 | ENST00000367511.4 | c.929G>A; p.(Arg310His) | 1:184823223 | SNV/missense | VUS | Unc | Prdam | Unc | Prdam | Neu | B | Unc | B | Unc | 0.8500 |
| SCUBE2 | ENST00000649792.2 | c.692C>T; p.(Thr231Ile) | 11:9066765 | SNV/missense | VUS | Unc | Prdam | Unc | Prdam | Neu | B | Unc | Unc | P | 0.8450 |
| Gene/Protein | Biological function | Phenotype associated with this gene in humans | The phenotype associated with this gene in mice models | In vitro studies (NR5A1 related) | A possible contribution of this gene to the DSD phenotype of the patient? |
|---|---|---|---|---|---|
| NR5A1/SF-1 |
|
NR5A1 homozygous and heterozygous variants are associated with disorders of sex development: including adrenal insufficiency and 46,XY gonadal dysgenesis, ambiguous genitalia, hypospadias, micropenis, spermatogenic failure with normal genitalia and primary ovarian insufficiency [28, 29]. | The majority of heterozygous NR5A1/SF-1 variants located in the DNA binding domain present with impaired functional activity on different human steroidogenic enzyme promoters. While variants located elsewhere in the SF-1 protein present with variable activity. Mostly, no genotype-phenotype correlation was found [6]. | Yes | |
| NR1H2/LXRβ | Plays an important role as a modulator of lipid homeostasis and inflammation throughout the human body [31]. | Diseases associated with NR1H2 include type 2 diabetes and male infertility (azoospermia) [31-35]. |
|
LXRβ is involved in the basal expression levels of CYP11A1, StAR, and NR5A1 in NCI-H295R adrenal cells [33]. | Yes |
| INHA/Inhibinα | Antagonizes activin signaling in the reproductive hypothalamic-pituitary gonadal axis [36, 37]. | Homozygous INHA variants are associated with decreased prenatal and postnatal testosterone production and infertility in males, and primary ovarian failure in women [37-39]. | INHA knockout mice develop mixed or incompletely differentiated gonadal stromal tumors and die from cachexia syndrome [37, 40]. | Rat inhibin alpha gene expression is regulated by the synergistic activity of Nr5a1 and cAMP [41]. | Yes |
| TCF7L2/TCF-4 |
|
TCF7L2 variants are associated with an increased risk of type 2 diabetes [46-48]. |
Tcf7l2 knockout causes neonatal death in mice [42]. Conditional inactivation of Tcf7l2 in the adult intestinal epithelium in mice causes impaired cell proliferation in the small intestines and colon [45]. |
Tcf-4 is involved in the rat inhibin alpha gene expression: Tcf-4 disrupts β-catenin’s ability to synergize with Sf-1 on the inhibin alpha promoter in a dose-dependent manner [49]. | Unlikely |
| NIBAN1/FAM129A | Plays an important role in apoptosis, preventing cell death and tumor progression under stress conditions [50, 51]. | NIBAN1 expression has been described in several tumor subtypes, including microcarcinomas, papillary and follicular carcinoma, prostate cancer, as well as in Hashimoto’s Thyroiditis [50]. | Niban1 -/- mice are viable and show no obvious phenotype or any phenotypic abnormalities [51]. | Not found | Unlikely |
| SCUBE2/SCUB2 | Plays an important role as a tumor suppressor in different types of cancer [52, 53]. |
SCUBE2 expression is reduced in endometrial, breast, and colorectal cancers [52]. | Scube2 (-/-) mice have defective endochondral bone formation and impaired Indian hedgehog-dependent chondrocyte-mediated chondrocyte differentiation and proliferation [54]. | Not found | Unlikely |
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