Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

Extracted Spectral Signatures from the Water Column as a Tool for Characterization of Marine Microbial Community

Version 1 : Received: 8 January 2024 / Approved: 8 January 2024 / Online: 9 January 2024 (05:21:28 CET)

A peer-reviewed article of this Preprint also exists.

Puškarić, S.; Sokač, M.; Ninčević, Ž.; Šantić, D.; Skejić, S.; Džoić, T.; Prelesnik, H.; Børsheim, K.Y. Extracted Spectral Signatures from the Water Column as a Tool for the Prediction of the Structure of a Marine Microbial Community. J. Mar. Sci. Eng. 2024, 12, 286. Puškarić, S.; Sokač, M.; Ninčević, Ž.; Šantić, D.; Skejić, S.; Džoić, T.; Prelesnik, H.; Børsheim, K.Y. Extracted Spectral Signatures from the Water Column as a Tool for the Prediction of the Structure of a Marine Microbial Community. J. Mar. Sci. Eng. 2024, 12, 286.

Abstract

In this communication, we present an innovative approach leveraging advanced Machine Learning (ML) and Artificial Intelligence (AI) techniques, specifically the Non-Negative Matrix Factorization (NMF) method, to analyze downward and upward light spectra collected by Hyperspectral Ocean Color Radiometer (HyperOCR, HOCR) sensors in the water column. Our work focuses on the development of a robust and efficient tool for unraveling the structure and activities of natural microbial assemblages in the ocean. By applying the NMF method to HyperOCR data, we successfully extracted five spectral signatures, representing unique patterns in the data. These signatures were instrumental in predicting the abundances of various microbial components, including bacteria, heterotrophic nanoflagellates, and picoeukaryotes, showcasing the potential of ML and AI in advancing oceanographic studies. To validate the methods, the study area included a shallow coastal area under the influence of freshwater inflow and an open offshore area with a depth of 100 m. The study sites in coastal and offshore waters (Kaštela Bay and Stončica Vis, respectively) had significantly different hydrographic and microbiological characteristics. Kaštela Bay had lower temperatures and salinity than the site on Vis. We have proved by application of different AI and ML methods with specific HOCR sensors prediction of the structure of the microbial community.

Keywords

spectral signatures; machine learning; artificial intelligence; non-negative matrix factorization; prediction; microbial community structure; ocean

Subject

Environmental and Earth Sciences, Oceanography

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