Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

CT-Based Radiomics to Predict the KRAS Mutation in CRC patients. A Retrospective Study

Version 1 : Received: 29 June 2023 / Approved: 30 June 2023 / Online: 30 June 2023 (11:25:24 CEST)

A peer-reviewed article of this Preprint also exists.

Porto-Álvarez, J.; Cernadas, E.; Aldaz Martínez, R.; Fernández-Delgado, M.; Huelga Zapico, E.; González-Castro, V.; Baleato-González, S.; García-Figueiras, R.; Antúnez-López, J.R.; Souto-Bayarri, M. CT-Based Radiomics to Predict KRAS Mutation in CRC Patients Using a Machine Learning Algorithm: A Retrospective Study. Biomedicines 2023, 11, 2144. Porto-Álvarez, J.; Cernadas, E.; Aldaz Martínez, R.; Fernández-Delgado, M.; Huelga Zapico, E.; González-Castro, V.; Baleato-González, S.; García-Figueiras, R.; Antúnez-López, J.R.; Souto-Bayarri, M. CT-Based Radiomics to Predict KRAS Mutation in CRC Patients Using a Machine Learning Algorithm: A Retrospective Study. Biomedicines 2023, 11, 2144.

Abstract

Colorectal cancer (CRC) is one of the most common types of cancer worldwide. The KRAS mutation is present in 30-50% of CRC patients. This mutation confers resistance to treatment with anti-EGFR therapy. This article aims at proving that Computer Tomography (CT)-based Radiomics can predict the KRAS mutation in CRC patients. The piece is a retrospective study with 56 CRC patients from the Hospital of Santiago de Compostela, Spain. All patients had a confirmatory pathological analysis of the KRAS status. Radiomics features were obtained from the abdominal contrast enhancement CT (CECT), before applying any treatments. We used several classifiers, including adaboost, neural network, decision tree, support vector machine and random forest, to predict the presence or absence of KRAS mutation. The most reliable prediction was achieved using the adaboost ensemble on clinical patient data, with a kappa and accuracy of 53.7% and 76.8%, respectively. The sensitivity and specific were of 73.3% and 80.8%. Using texture descriptors, the best accuracy and kappa were 73.2% and 46%, respectively, with sensitivity and specificity of 76.7% and 69.2%, showing also a correlation between texture patterns on CT images and KRAS mutation. Radiomics could help manage CRC patients, and in the future, it could have a crucial role in diagnosing CRC patients ahead of invasive methods.

Keywords

KRAS mutation; colorectal cancer; texture analysis; radiomics, radiogenomics.

Subject

Medicine and Pharmacology, Oncology and Oncogenics

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