There is crescent demand for knowledge improvement of the integrated water vapor (IWV) distribution in regions affected by heat islands that are associated with extreme rainfall events such as in the metropolitan area of Rio de Janeiro (MARJ). This work assessed the suitability and distribution of IWV in the MARJ using products from the Global Navigation Satellite Systems (GNSS), MODerate Resolution Imaging Spectroradiometer (MODIS), and radiosonde. GNSS data were collected by the tracking station named RDJN, from the cooperation of the International GNSS Monitoring and Assessment System (iGMAS) and the National Observatory of Brazil (Observatório Nacional - ON), and the tracking stations ONRJ, RIOD, and RJCG belonging to the Brazilian Network for Continuous Monitoring (RBMC) in the period of January 2015–August 2018. High variability of the near surface air temperature (T) and relative humidity (RH) were observed among eight meteorological sites considered. The mean T differences between sites, up to 4.4 °C, led to mean differences as high as 3.1 K for weighted mean temperature (Tm) and hence 0.83 mm for IWV differences. The performance of the MODIS MOD07 and MYD07 products provided a reasonably good representation of the mean spatial distribution of IWV, especially during the daylight passages of the satellites TERRA and AQUA. Local grid points of MODIS IWV estimates had relatively good agreement with the GNSS-derived IWV, with mean differences from -2.4–1.1 mm considering only daytime passages of the satellites TERRA and AQUA. During nighttime, MODIS underestimated IWV (from -9–-3 mm) with respect to GNSS, due to attenuation of IR radiation by clouds. A contrasting behavior was found in the radiosonde IWV estimates compared with the estimates from GNSS. There were dry biases of 1.4 mm (3.7% lower than expected) by radiosonde IWV during the daytime considering that all other estimates were unbiased and the differences between IWV GNSS and IWV RADS were consistent. Based on the IWV comparisons between radiosonde and GNSS at nighttime, the atmosphere over the radiosonde site is about 1.2 (2.3) mm wetter than over RIOD (RDJN) station. The long time series of the comparisons between IWVRDJN and IWVRIOD showed that the highest values of IWV occurred from the afternoon to nocturnal hours. Further, the atmosphere over the site RIOD was consistently about 1 mm wetter than over RDJN. These results showed the feasibility of the iGMAS RDJN station data compared with the RBMC, MODIS, and radiosonde data to investigate IWV in a region with occurrence of heat islands, and the peculiar physiographic and meteorological characteristics as in the MARJ. This work recommended the usage of complete meteorological station data collocated near every GNSS receiver aiming improvements of local GNSS IWV estimates and serving as additional support for operational numerical assimilation, weather forecast, and nowcast of extreme rainfall events.