In the present study a new approach for planning Micro-Catchment Water Harvesting (M.C.W.H.) systems for irrigation in semi-arid regions such as the Aegean islands, is presented. This is a cheap solution for constructing infrastructure with zero energy cost in regions where water is scarce. The proposed approach introduces simple linear relationships for estimating the annual volume of water Vs collected mainly from the CA (Contributing Area), stored in the root zone (Infiltration Basin, IB), according to the annual rainfall and runoff depths, after having determined the ratio of areas of micro-catchment components, i.e., λ = ΑCA/ΑΙΒ and its whole area AMC This procedure was applied in Paros island of the Cyclades complex in the middle of the Aegean sea in east Mediterranean. Besides, income-cost analysis was performed via NPV method for almonds, peach and apricot trees.