Submitted:

14 November 2018

Posted:

16 November 2018

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Abstract
We present a case of Capnocytophaga canimorsus septic shock after a dog bite in an immunocompetent individual, where real-time nanopore metagenomic sequencing characterized the microbial agent within 19 hours, with subsequent confirmation using droplet digital PCR. Oral swabs from the dog demonstrated a nearly-identical C. canimorsus isolate by sequencing.
Keywords: 
nanopore sequencing; droplet digital PCR; Capnocytophaga canimorsus; diagnosis; sepsis
Subject: 
Medicine and Pharmacology  -   Pathology and Pathobiology
Copyright: This open access article is published under a Creative Commons CC BY 4.0 license, which permit the free download, distribution, and reuse, provided that the author and preprint are cited in any reuse.

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