It is found in this paper that ILR-RPCA-back CLR has two problems when dealing with the closure effect of geochemical data. (1) After ilr transformation, RPCA is used for processing. It can be seen from the double-plot diagram that the first principal component and the second principal component transform with the element sequence transformation, and the unique principal component cannot be calculated; (2) the score and the load are transformed into the CLR space through the U matrix. According to the formula CLR=ALR·U, the score result can correspond to the original order of elements. However, the load result obtained by the use of this formula cannot correspond to the original order of elements, and the result can only be obtained through the formula” CLR=UT·ALR”. In order to obtain the best element assemblage of porphyry copper deposit, this paper adopted the mineral assemblage of discovered deposits in Gangdese metallogenic belt for statistical analysis, and obtained that the element assemblage of porphyry copper deposit was Cu, Mo, Au, Ag, W, Bi. Then, by analyzing the singularities of the composite elements, the spatial overlay of the combined element is carried out, and C-A fractal filtering is applied to identify the anomaly and background. In order to facilitate comparison, the different minerals and ore deposit types have been analyzed, the results show that (1) in view of the porphyry copper deposits, recognition effect of combination elements are better than which single element, (2) skarn type copper deposit that it has nothing to do with the porphyry had a high degree of difference, but skarn type copper deposit related to the porphyry had a low degree of difference, (3) This method has a certain advantage over the single element method in porphyry gold deposits, and it can reduce the level of anomalies. Such an advantage is that in the aspect of anomaly evaluation of porphyry copper deposits, the level is reduced at the initial stage of evaluation to reduce the investment in such anomalies, (4) This method has limited ability to distinguish porphyry copper deposit from porphyry molybdenum deposit.