Βottom-up management in catchment scale is deemed as the determinant way to avoid the conflict of the water users through the participation of stakeholders, strategy co-shaping and solutions co-creation. Water management cannot be one-dimensional but demands cross sectoral coop-eration. Usually, the difficulty lies in proper stakeholder training and their opinion inclusion, using a quantifiable manner in water management. The Laspias River watershed occupies an area of 221.8 km2, belonging to the River Basin District of Thrace and it is characterized by intense agricultural and industrial activity. Complying with the augmented water needs and pollution loads by respecting stakeholders’ opinion, this research aims to utilize a hybrid intuitionistic fuzzy multi-criteria-based methodology. It is a common difficulty to deal with supplier selection in resources management since it is a typically decision-making problem encompassing multiple (several conflicting) criteria, on which stakeholder’s opinions are usually imprecise and in a rather qualitative form. Therefore, the proposed method provides the mathematical tool to move into more comprehensive decisions with the public involvement. The weights are produced based on the stakeholder’s opinion. The alternatives’ ranking is achieved based on the fuzzified intuition-istic version of Technique for Order of Preference by Similarity to Ideal Solution (TOPSIS) and problems’ mitigation solutions’ hierarchy is achieved.