Nutrient recovery technologies have been constantly developed and optimised to address challenges in water and wastewater management, sanitation, and agri-food systems, while promoting sustainable management of resources, and circular phosphorus economy. However, these technologies have been rarely explored beyond laboratory-scale in developing countries where it is mostly needed, such as the Philippines. In this study, a nutrient recovery batch reactor system was installed at a local farm to process raw septage from an onsite sanitation system, septic tank, to recover a high-value fertiliser for local crop production. The batch reactor was used for two processes; acid hydrolysis for pre-treatment of septage and chemical precipitation to recover phosphorus fertiliser (RPF). The recovered fertiliser was then applied to produce eggplants and tomatoes, which are the common crops grown in the farm. Results show that an average of 290 g of recovered RPF was produced for every 100 L of raw septage processed. With hydrolysis, 77% of the phosphate concentration were released as phosphates from the solid component of the raw septage. About 98.5% of phosphates were recovered from the hydrolysed septage. The RPF when applied to the farm’s eggplants and tomatoes have yields comparable to that of the commercial fertilisers. This study was able to demonstrate the potential of a resource-oriented sanitation system that promotes nutrient recycling toward sustainable agriculture that further leads to meeting the United Nation’s Sustainable Development Goals, particularly Zero Hunger (goal 2), Clean Water and Sanitation (goal 6), Sustainable Cities and Communities (goal 11), and Responsible Consumption and Production (goal 12).