3. Low-Temperature Spectrofluorometry of Photoreceptors—(Bacterio)Rhodopsin and Phytochrome
Low-temperature fluorescence spectroscopy was also applied in our studies to the key biological photoreceptors. These photoreceptors share a common property: they are chromoproteins with a retinal and a bilin as a prosthetic group, respectively, capable of photochromism with a common type of photoreaction—chromophore photoisomerization.
Visual rhodopsin until recently was considered non-fluorescent [
14,
15]. In our laboratory, however, we were able to demonstrate that the initial photoactive states of rhodopsin from the outer segments of frog [
16] and bovine [
17] retinal rods fluoresce in the 600-650 nm region with an emission at 77 K of (6±2)x10-4 and 10-3, respectively (
Figure 5). Evidence that the emission is due to the photoactive pigment in both cases is provided by the coincidence of the fluorescence excitation spectrum and the absorption spectra, as well as the correlation between fluorescence and absorption changes during the rhodopsin photoreaction. Doukas et al. [
18] observed fluorescence of squid and bovine rhodopsin in the 620-640 nm region with an emission of 10-5 at room temperature. Also, Cronin and Goldsmith [
19] measured the fluorescence of the meta intermediate of a crayfish at room temperature with maxima at 670 and 515 nm in the emission and excitation spectra and a yield of (1.6±0.4)x10-3. Discussion on the issue of rhodopsin fluorescence see in more detail in [
20].
Bacteriorhodopsin. The discovery of a photoenergetic process in halobacteria that involves bacteriorhodopsin [
21], which is related to visual rhodopsin, has attracted the attention of researchers who study both vision and photosynthesis. We conducted experiments to detect bacteriorhodopsin fluorescence and recorded emission from purple membranes with maxima at 665, 720-730, and 780-790 nm and a quantum yield of 10
-3 at 77 K [
22,
23,
24] . Its attribution to bacteriorhodopsin was confirmed by the correspondence of its excitation spectrum to the pigment absorption spectrum, a direct correlation between changes in fluorescence intensity and pigment conversion during the photoreaction, and the disappearance of fluorescence upon membrane bleaching. It turned out that the initial state of bacteriorhodopsin, trans-bacteriorhodopsin, does not fluoresce even at low temperatures. However, upon illumination, it transforms into an isochromic photoactive state, iso-bacteriorhodopsin, with a quantum yield of 10
-3 at 77 K. Fluorescence of 13-cis-bacteriorhodopsin was also recorded in dark-adapted purple membranes, as was fluorescence of the bacteriorhodopsin conversion intermediate P
585, with a maximum at 730-740 nm (at 200 K). It was also established that the bathointermediates of trans- and 13-cis-bacteriorhodopsin conversion do not fluoresce in the spectral region studied. Subsequently, measurements of the fluorescence spectra of purple membranes with similar parameters were carried out by a number of authors (see review [
20]), and thus the existence of bacteriorhodopsin fluorescence could be considered established.
Figure 6.
Fluorescence (a) and fluorescence excitation (b, points) spectra of iso- (1) and 13-cis- (2) bacteriorhodopsin at 77 K; 1′—absorption spectrum of light-adapted membranes (mixture of the states of trans- and iso-bacteriorhodopsin); 2′—spectrum of 13-cis-bacteriorhodopsin. The excitation spectra were constructed from the initial angle of slope of the curve of change in fluorescence (c) in the course of the photoreaction; fluorescence spectra, from the amplitude ∆F; points—mean of 5-7 measurements; vertical lines show standard error [
24].
Figure 6.
Fluorescence (a) and fluorescence excitation (b, points) spectra of iso- (1) and 13-cis- (2) bacteriorhodopsin at 77 K; 1′—absorption spectrum of light-adapted membranes (mixture of the states of trans- and iso-bacteriorhodopsin); 2′—spectrum of 13-cis-bacteriorhodopsin. The excitation spectra were constructed from the initial angle of slope of the curve of change in fluorescence (c) in the course of the photoreaction; fluorescence spectra, from the amplitude ∆F; points—mean of 5-7 measurements; vertical lines show standard error [
24].
Phytochrome mediates the perception of both light quality and intensity by plants [
25]. Its functioning is known to be based on the photoconversion of the initial red form (Pr) into active far-red form (Pfr), which includes light and several dark stages [
26]. The difficulty of studying it is largely due to the extremely low concentration of the pigment in plant tissues, its lability, and the limitations of existing experimental approaches. We attempted to detect phytochrome fluorescence in plant tissues and develop a fluorescence method for its study [
27,
28,
29]. It should be noted that several studies in the literature were devoted to fluorescence measurements of purified phytochrome (see review [
26]), however, reliable data on its fluorescence in the native state in cells were lacking. In etiolated seedlings of higher plants, we detected phytochrome fluorescence with maxima in the emission spectrum at 686 nm and excitation at 672-673 nm (
Figure 3) and a yield of >0.3 at 77 K. Fluorescence showed a sharp temperature dependence; its yield dropped tens of times with an increase in temperature to room temperature (Figure ).
Figure 7.
Fluorescence of phytochrome in the stems of etiolated pea seedlings at 77 K: 1—emission spectrum under monochromatic excitation at 630 nm; 2—excitation spectrum (emission is monitored at > 700 nm). The spectra were corrected for the backgound fluorescence. Inset: absorption spectrum of intact 124-kDa oat phytochrome measured at 275 K after adaptation to (1) saturating far-red light (λa= 735 nm) and (2) red light (λa = 650 nm). From [
27,
28].
Figure 7.
Fluorescence of phytochrome in the stems of etiolated pea seedlings at 77 K: 1—emission spectrum under monochromatic excitation at 630 nm; 2—excitation spectrum (emission is monitored at > 700 nm). The spectra were corrected for the backgound fluorescence. Inset: absorption spectrum of intact 124-kDa oat phytochrome measured at 275 K after adaptation to (1) saturating far-red light (λa= 735 nm) and (2) red light (λa = 650 nm). From [
27,
28].
A number of facts indicated that the observed emission belonged to phytochrome, its red form (see reviews [
29,
30]) :
1. The fluorescence excitation spectrum was found to be close to the low-temperature absorption spectrum of purified phytochrome. A close similarity between the fluorescence characteristics of the native pigment in the cell and the isolated pigment was also observed.
2. A correlation was established between the phytochrome content in the sample, measured by the traditional differential absorption method, and the fluorescence intensity.
3. A direct correlation was found between the fluorescence intensity and the photoconversion of Pr to Pfr at room temperature (
Figure 8) and to the primary photoproduct lumi-R at low temperature.
4. Phytochrome emission was observed in wild-type plants and phytochrome overexpressors, the level of phytochrome fluorescence correlated well with its content in modified plants. Phytochrome mutants without the essential phytochromes A and B lacked fluorescence.
5. Phytochrome fluorescence was detected in the transgenic bacterium E. coli and yeast P. pastoris expressing phytochrome A.
Fluorescence of the photoreaction product of Pr, lumi-R, was also detected, with an emission maximum at 705-710 nm and excitation at 696 nm and a yield close to that of Pr. The far-red form apparently has a significantly lower fluorescence yield than Pr and lumi-R; its emission could not be observed even at 4 K [
26].
The development of a fluorescence method for studying pigments over a wide temperature range (293–77 K) allowed for a detailed characterization of phytochrome in its native state using a number of parameters [
30]: (1) fluorescence emission spectra and fluorescence excitation spectra (congruent to the absorption ones), (2) position and half-band width of their major maxima, (3) polarization degree of the emission, (4) concentration of the pigment ([Ptot]), (5) the extent of the Pr→lumi-R (at 77–85 K) (γ1) and Pr→Pfr (at ambient T) (γ2) conversion, (6) activation and kinetic characteristics of the Pr fluorescence quenching and photoreaction (
Figure 8).
The state and properties of native phytochrome in cells were studied in detail in relation to its functional activity. The results obtained can be summarized as follows [
30,
31].
1. Two types of photoreceptor differing in their ability to undergo photoconversion at low temperatures were discovered for phytochrome A (type 1 and type 2) and one type (type 2) for phytochrome B. It was shown that this phenomenological difference between the two types of phytochrome A is due to the existence of an activation barrier Ea of the Pr—lumi-R photoreaction, which is low in the case of type 1 (hundreds of J/mol) and relatively high (tens of kJ/mol) for type 2.
2. The use of this clear phenomenological criterion for distinguishing between the two phytochrome types—the depth of the drop in phytochrome emission intensity under the influence of light at low temperatures (77-85 K) (
Figure 8) (50% for type 1 and < 5% for type 2)—made it possible to trace changes in the content of two pigment pools in plants of different species and ages, their mutants and transgenic forms, and in expression systems (E. coli, P. pastoris), as well as with changes in environmental factors. Light, kinase/phosphatase balance, pH, and hormones (jasmonate) were shown to affect the content and functions of the two phyA pools. As a result, they were quantitatively and qualitatively characterized as the major, longer-wavelength, water-soluble and light-labile (type 1), and the minor, shorter-wavelength, relatively light-stable, and amphiphilic (type 2).
3. A study of point and deletion mutants of phytochrome A revealed structural differences between the two types, localized in the N-terminal segment of the molecule. These two photoreceptor types are likely differ in the degree of phosphorylation (at one or more serine residues)—type 1 is phosphorylated and type 2 is dephosphorylated.
4. The properties of the two phytochrome A pools and changes in their content in response to light in wild-type plants and their mutants with altered photoregulatory responses suggest that the two different pools of phytochrome A are responsible for the two types of plant photoreactions (the so-called very-low- and high-energy responses), while phytochrome B is responsible for the 3d—the low-energy type.
5. Within the type 1 of phytochrome A photoactive at low temperatures, different conformers of the pigment were detected. This is evidenced by the complex nature of the dose dependence of the low-temperature (85 K) photoconversion of phytochrome A (in etiolated pea stems) from Pr into lumi-R and reverse upon illumination by red and far-red light, respectively.
Thus, low-temperature phytochrome fluorescence studies suggest a complex phytochrome system comprising, in addition to different phytoromes (level 1), various modified types within a single phytochrome (level 2), and conformers of a single moleclar type (level 3). From the experimental point of view, the developed fluorescence method for phytochrome analysis proved to be 1.5-2 orders of magnitude more sensitive and much more informative than traditional absorption and immunochemical methods.
Analysis of the fluorescent and photochemical characteristics of rhodopsins and phytochromes suggests fundamental similarities in the properties of their excited states and primary photoprocesses, as well as differences that are quantitative in nature.
1. All of the pigments examined are capable of undergoing photochromic transformations to varying degrees, with different states of photoactive (bacterio)rhodopsin and phytochrome likely initiating different transformation cycles for these pigments.
2. An inverse correlation is observed between the fluorescence yield and the pigment's photoactivity; the yield is particularly low for photoactive states and relatively high for non-photoactive forms, indicating strong competition between radiative deactivation and photoreaction.
3. Fairly good agreement is observed between the calculated lifetimes of the excited states of pigments and direct measurements of the photoreaction times and lifetimes of excited states.
4. The emission and excitation (absorption) spectra of rhodopsins and phytochrome do not obey the mirror symmetry rule: the emission spectra are characterized by greater structure than the absorption (excitation) spectra.
5. The existence of isochromic states of bacteriorhodopsin and phytochrome, differing in fluorescence yield and photoreaction rate, indicates the need to overcome an energy barrier during the photoreaction.
6. The fluorescence of rhodopsins and phytochrome is strongly polarized in the direction of the absorption transition point. Based on this, it can be assumed that conformational changes in the excited state, indicated by the violation of the mirror symmetry rule, do not lead to a significant change in the transition moment.
A hypothetical general photoreaction scheme can be proposed for rhodopsins and biliproteins based primarily on the data obtained on phytochrome. This scheme (
Figure 9) is characterized by the assumption that the photoreaction and fluorescence arise from a single excited state, with the photoreaction (whether complete or incomplete) being the primary and possibly the only temperature-dependent pathway for excited state deactivation. It is also assumed that the photoreaction occurs by overcoming the energy barrier Ea in the excited state and that the initial state and photoproduct share a "hot" ground level. A key feature of the scheme is relaxation in the excited state, which can involve redistribution of electron density and conformational rearrangements. At low T (77–85 K), the activation barrier Ea blocks, completely or partially, depending on the phytochrome species (see below), the photochemical route of the excited state relaxation. This competition between the emission and photochemistry explains the low fluorescence yield of phytochrome at ambient T (Ta) (~0.005) and the high (~0.3) fluorescence yield of phytochrome at cryogenic T (Tc) [
27,
28].
Mechanistically, the activation barrier Ea can be connected (in phytochrome) with structural hindrances (breaking of hydrogen bonds) for the rotation of the 4th tetrapyrrole cycle in the chromophore pocket during the photoisomerization. Given that the photoreaction (either completed or uncompleted; see the scheme of the photoreaction in
Figure 9) is the only temperature-dependent excitation deactivation pathway from the S1 state of Pr, the increase in the height of the activation barrier Ea can be thus achieved by the lowering of the flexibility of the chromophore via its firm fixation in the apoprotein pocket. Within the framework of the scheme, the low activation barriers in the case of (bacterio)rhodopsins apparently determine the high rate of deactivation of excited states along the isomerization coordinate of the primary photoreaction and the efficient quenching of their fluorescence, even at cryogenic temperatures. In contrast, light-harvesting biliproteins, unlike the related phytochrome, have long excited-state lifetimes and high fluorescence quantum yields, which are prerequisites for their effectiveness as energy donors and are ensured by the rigid fixation of the chromophore in the cyanobacterial matrix. For more detailed information on how the protein component influences the photophysical and photochemical properties of phytochromes and related phycobilins, refer to the fluorescence and structural studies of the cyanobacterial phytochrome (Cph1) discussed in review [
12].