Submitted:
30 June 2026
Posted:
02 July 2026
You are already at the latest version
Abstract
Keywords:
1. Introduction
| N/A | |
2. Biological Basis of Molecular Inference from Histopathology
3. MMRd Subtype
4. p53abn Subtype
5. POLEmut Subtype
6. NSMP Subtype
7. Prediction of TMB
8. Discussion
8.1. Methodological Pitfalls
8.2. Interpretability and Biological Validation
8.3. Clinical Translation as a Triage Tool
8.4. Future Directions
9. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AI | Artificial intelligence |
| AUROC | Area under the receiver operating characteristic curve |
| CN | Copy number |
| CNA | Copy number alteration |
| DL | Deep learning |
| EC | Endometrial cancer |
| ER | Oestrogen receptor |
| H&E | Haematoxylin and eosin |
| IHC | Immunohistochemistry |
| MMR | Mismatch repair |
| MMRd | Mismatch repair deficiency |
| MSI | Microsatellite instability |
| NGS | Next-generation sequencing |
| NSMP | No specific molecular profile |
| p53abn | Aberrant p53 expression |
| POLEmut | Pathogenic POLE exonuclease domain mutation |
| PR | Progesterone receptor |
| ProMisE | Proactive Molecular Risk Classifier for Endometrial Cancer |
| TCGA | The Cancer Genome Atlas |
| TMB | Tumour mutational burden |
| TME | Tumour microenvironment |
| WSIs | Whole-slide images |
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| Author (year) | Model/architecture | Internal cohort/dataset | External cohort/dataset | Task | Internal performance | External performance | |||
| Hong et al. (2021) [16] |
“Panoptes”, custom multi-resolution, InceptionResNet-based CNN (2.5×, 5×, 10×) |
TCGA and CPTAC, 496 WSIs of 456 pts, (train/val/test 8:1:1) |
NYU, 137 WSIs of 41 pts | MSI | AUC 0.827 | AUC 0.667 | |||
| CNV-H, CNV-L, POLE, TP53 (+17 genes) |
CNV-H/TP53/POLE/CNV-L, AUC 0.934/0.873/0.681/0.889, POLE (multi-model), 0.89 |
CNV-H/TP53/POLE/CNV-L, AUC 0.795/0.920/NA/0.850 |
|||||||
| Fremond et al. (2023) [17] |
“im4MEC”, SSL-MoCo-v2+ResNet50, attention, HoVer-Net |
PORTEC and multiple clinical cohorts, total 2028 pts, 4-fold CV |
PORTEC-3, 393 pts | MSI | N/A | AUC 0.844 | |||
| 4-class ProMisE | Macro-average AUC 0.874 | Macro-average AUC 0.876, TP53/POLE/NSMP, AUC 0.928/0.849/0.883 |
|||||||
| Zhang et al. (2023) [18] |
ResNet34, GAM-VGG16 |
TCGA, 95 WSIs of 95 pts, (train/test 70:25) |
N/A | MSI | AUC/Accu/Sens/F1-score, 0.799/0.80/0.857/0.826 |
N/A | |||
| Wang et al. [npjDM]a (2024) [19] |
Weakly supervised DL with FPS+MFCN+IPS +InceptionV3+WSID |
TCGA, 529 pts, (train/test ⅔:⅓) |
N/A | MSI (GT: NGS-based) |
Accu/Prec/Sens/F-measure, G1G2, 0.94/0.93/1.00/0.96; G3, 0.84/0.81/0.94/0.87, Inference time (1.03s/WSI) |
N/A | |||
| Whangbo et al. (2024) [20] |
Multi-resolution ensemble, ImageNet, EfficientNetB2 (2.5×, 5×, 10×) | GUGMC, 1168 WSIs of 325 pts, (train/test 8:2) | N/A | MMRd (GT: 4 IHC-based) |
AUC/Accu/Sens/Spec, 0.821/0.778/0.827/0.764 |
N/A | |||
| Umemoto et al. (2024) [21] |
ResNet50, API-Net-based |
SMUH, 114 pts, (train/val/test 70:15:15) |
N/A | MMRd (GT: PMS2, MSH6 IHC-based) |
AUC/Accu/Prec/Recall/F-score (per-tile level), ResNet50: 0.91/0.79/0.89/0.65/0.75; API: 0.85/0.85/0.75/0.69/0.72 |
N/A | |||
| Wang et al. [npjPO]a (2024) [22] |
Truncated ResNet50 (for subtype), Truncated ResNet152 (for TMB), ImageNet-pretrained TR-MAMIL |
TCGA, 918 WSIs of 529 pts for TMB; TSGH, TMA, 242 cores for MMR and TP53, [train/val/test (⅔ⅹ0.9: ⅔ⅹ0.1): ⅓] |
N/A |
N/A | MSI biomarkers (GT: IHC-based) |
MLH1/MSH2/MSH6/PMS2, MeanSS: 0.92/0.83/0.83/0.84 | N/A | ||
| N/A | |||||||||
| TMB-high/low by 10 mut/Mb (GT: NGS-based), p53, TP53 |
AUC/MeanSS, TMB in aggressive type 0.82/0.73; TMB in non-aggressive 0.56/0.68, p53 (TMA) 0.78/0.78, TP53 0.68/0.73 |
N/A | |||||||
| Volinsky -Fremond et al. (2024) [23] |
“HECTOR” (multimodal), 3-arm multimodal architecture (WSI+im4MEC+stage) |
Total 2751 pts, 5-fold CV, (train/test 1408:353 pts) |
UMCG, 160 pts; LUMC, 151 pts |
Recurrence risk associated with molecular type |
Unimodal; 2arm; HECTOR(3arm), Mean C-index: 0.775; 0.782; 0.795, held-out test set: 0.789 |
UMCG; LUMC, C-index: 0.828; 0.802-0.815 |
|||
| Darbandsari et al. (2024) [24] |
VarMIL, ResNet34 |
TCGA, 155 WSIs of 146 pts; TU, 431 WSIs of 222 pts, 10-fold CV, (train/val/test per fold 60:20:20) |
BC, TMA, 290 pts; CC 640 WSIs of 614 pts from 26 hospitals |
NSMP, p53abn, p53abn-like NSMP |
p53abn vs. NSMP, AUC/Accu, 0.95/0.894 |
p53abn vs. NSMP, AUC/Accu, BC 0.88/0.798; CC 0.88-0.95/0.663-0.885 |
|||
| Liu et al. (2025) [25] |
“MMRNet”, ensemble, EfficientNet, ResNet18, reader study, human-machine fusion |
Internal-UCEC, 1027 WSIs of 1026 pts, 5-fold CV |
TCGA, 401 WSIs of 369 pts; MultiCenter, 230 WSIs of 230 pts; GWCH, 421 WSIs of 421 pts |
MMRd | AUC/Sens/Spec/NPV, 0.897/0.628/0.949/0.892 |
MMRNet (3 cohorts) AUC 0.790;0.807;0.863; H-M fusion (3 cohorts) AUC 0.802;0.913;0.932 |
|||
| Wang et al. [CMIG]a (2025) [26] |
“IMAN”, SwAV-SSL-ResNet50 |
TSGH, TMA, 242 cores, (train/test ⅔:⅓) |
N/A | MSI biomarkers (GT: IHC-based) |
MLH1/MSH2/MSH6/PMS2, MeanSS 0.85/0.92/0.91/0.92, Inference time (18.71s/WSI) |
N/A | |||
| TP53 (GT: IHC-based) | MeanSS 0.81 | N/A | |||||||
| Qi et al. (2025) [27] |
SRResGAN, MedSAM, ResNet101, Grad-CAM |
393 pts, (train/test 8:2) |
OGHFU, 83 pts; PMCHH, 35 pts |
MMRd | AUC 0.92 | AUC, O: 0.96/ P: 0.93 | |||
| 4-class ProMisE (GT: POLE testing +IHC-based) |
average AUC/Sens /Spec/overall Accu , 0.980/0.907/0.924/0.914 , p53abn/POLE/NSMP, AUC 0.91/0.92/0.90 |
p53abn/POLE/NSMP, AUC O: 0.97/0.98/0.94; P: 0.94/0.97/0.91 |
|||||||
| Cui et al. (2025) [28] |
“hi-UNI”, DeepLab v3 |
FUSCC, 364 WSIs of 324 pts, 5-fold CV |
N/A | MSI | Macro-average AUC 0.829 |
N/A | |||
| 4-class ProMisE (GT: NGS-based) |
Macro-average AUC 0.879, TP53/POLE/NSMP, AUC 0.899/0.886/0.899 |
N/A | |||||||
| Wang et al. [MIA]a (2025) [29] |
ETMIL-SSLViT | TCGA 918 WSIs of 529 pts, (train/test ⅔:⅓) |
N/A | histologic subtype, TMB |
AUC/MeanSS, TMB in aggressive type 0.82/0.77; TMB in non-aggressive 0.61/0.64, Inference time (26.8s/WSI) |
N/A | |||
| Wang et al. [BSPC]a (2025) [13] |
InceptionV3 | TCGA 529 pts; TSGH, TMA, 242 cores for MMR biomarkers, (train/test ⅔:⅓) |
N/A | MSI biomarkers (GT: IHC-based) |
MLH1/MSH2/MSH6/PMS2, AUC 0.947/0.889/0.905/0.894, MeanSS 0.89/0.84/0.81/0.81 |
N/A | |||
| TMB-high/low, by 10 mut/Mb (GT: NGS-based) |
AUC/MeanSS, TMB in aggressive type 0.734/0.76; TMB in non-aggressive 0.555/0.61, Inference time (0.37s/WSI) |
N/A | |||||||
| Guo et al. (2026) [30] |
DeepLab-v3, EfficientNetV2, Grad-CAM, human-in-the-loop triage tool |
Fudan 364 WSIs of 324 pts, 5-fold CV |
TCGA, 296 WSIs of 274 pts; Suzhou, 36 WSIs of 33 pts |
MSI | AUC 0.846 | AUC, T: 0.775; S: 0.761 | |||
| 4-class ProMisE (GT: NGS-based) |
Macro-average AUC 0.867, TP53/POLE/NSMP, AUC 0.910/0.835/0.876 |
Macro-average AUC, T: 0.844; S: 0.847, TP53/POLE/NSMP, AUC, T: 0.950/0.798/0.844; S: 0.862/NA/0.873 |
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