Submitted:
05 December 2025
Posted:
08 December 2025
You are already at the latest version
Abstract
Background: Aging brains are shaped by a persistent dialogue between declining neurogenesis and rising neuroinflammation. Neural stem cells progressively lose regenerative capacity, while microglia and astrocytes shift toward maladaptive states that erode synaptic plasticity and cognition. This convergence defines inflammaging, a slow yet relentless process that undermines resilience. However, the field remains hampered by critical gaps: incomplete mapping of microglial heterogeneity, poorly understood epigenetic scars from inflammasome signaling, lack of longitudinal data, unclear niche-specific immune mechanisms, and uncertain cross-species relevance. This review addresses these pressing barriers, aiming to transform fragmented insights into actionable strategies. Summary: I chart how neurogenesis and neuroinflammation operate in continuous dialogue, identify five major knowledge gaps, and evaluate strategies to reprogram this interaction. Approaches include longitudinal imaging, niche-focused immunomodulation, glial subtype reprogramming, brain-penetrant inflammasome inhibitors, and CRISPR-based epigenetic editing. Each strategy is mapped against translational potential, short-term feasibility, and long-term vision, with emphasis on how mechanistic precision can guide clinical innovation. Conclusion: Here I highlight that neurogenic potential is not entirely lost with age but may be preserved or restored by tuning immune and epigenetic environments. This review proposes a roadmap for reshaping the aging brain’s fate, offering mechanistically grounded strategies to delay cognitive decline. Beyond neurology, the work underscores a broader principle: by integrating cellular plasticity with immune modulation, science edges closer to re-engineering resilience across the lifespan.
Keywords:
1. Introduction

2. Neurogenesis and Neuroinflammation in the Aging Brain: An Overview
2.1. Adult Neurogenesis: Mechanisms and Age-Related Decline (~400 Words)
2.2. Neuroinflammation in Aging: Microglia and Beyond
2.3. Microglia–Neural Stem Cell Crosstalk
3. Critical Gaps in Current Knowledge
3.1. Gap 1 – Region-Specific Microglial Diversity in Aging
3.2. Gap 2 – Inflammasome-Driven Epigenetic Alterations
3.3. Gap 3 – Longitudinal Dynamics of Neuroimmune Interactions
3.4. Gap 4 – Niche-Specific Immune Mechanisms
3.5. Gap 5 – Translational and Cross-Species Disconnects

| Gap | Description of Unknown | Why it Matters / Consequences | Suggested Approaches | References |
|---|---|---|---|---|
| 1. Regional Microglial Diversity | Limited understanding of how microglial phenotypes differ across brain regions and influence neurogenesis | Regional vulnerabilities exist (hippocampus vs. olfactory bulb); lack of clarity hampers targeted interventions | Single-cell RNA-seq, region-specific lineage tracing, conditional microglial manipulation | [124,125,126] |
| 2. Inflammasome Dynamics in Aging | Unresolved timeline of NLRP3/other inflammasome activation in aged niches | Unclear when inflammasome priming becomes irreversible; timing critical for therapeutic window | Longitudinal transcriptomics, in vivo biosensors, inducible knockout models | [122,123,202] |
| 3. Crosstalk Between Peripheral and CNS Immunity | Mechanisms of how peripheral T cells and cytokines reshape neurogenic niches remain obscure | Infiltrating T cells alter NSC fate; missing mechanistic detail limits translation to systemic therapies | Fate-mapping of immune infiltration, parabiosis, targeted blockade of adhesion molecules | [124,125,126] |
| 4. Beneficial vs. Detrimental Microglial States | Poorly defined markers distinguishing pro-neurogenic vs. antineurogenic microglial states | Current therapies risk indiscriminate immunosuppression; need precision immunomodulation | Multi-omics integration (proteome, epigenome), machine-learning-based state classification, microglia-specific drug screens | [5,6,7] |
| 5. Non-coding RNA & Extracellular Vesicle Signaling | Roles of EV cargo (miRNAs, lncRNAs) in regulating neurogenesis under inflammation are underexplored | Missed therapeutic opportunities; EVs may carry both detrimental and reparative signals | High-resolution EV profiling, CRISPR-based RNA manipulation, engineered EV delivery systems | [203,204,205] |
4. Strategies and Emerging Approaches to Bridge the Gaps

4.1. Longitudinal Neuroimmune Imaging
4.2. Niche-Focused Immunomodulation
4.3. Glial Subtype Reprogramming
4.4. Brain-Penetrant NLRP3 Inflammasome Inhibitors
4.5. CRISPR-Based Epigenetic Editing
| Strategy | Examples / Tools | Goal / Effect | Stage of Development | References |
| Longitudinal Imaging | [^18F]FLT-PET for neurogenesis, TSPO-PET for microglial activation | Enables in vivo monitoring of neurogenesis and neuroinflammation across lifespan | Preclinical for neurogenesis tracers; TSPO-PET in human use | [206,207,208,235,236] |
| Brain-Penetrant NLRP3 Inhibitors | MCC950, NT-0796, BGE-102 | Reduce chronic IL-1β release, restore neurogenic potential | Preclinical to Phase 1 clinical trials | [211,212,213,214,215,216] |
| Glial Reprogramming | AAV-NeuroD1, SOX2-based astrocyte-to-neuron conversion | Replace lost neurons; rejuvenate circuits | Proof-of-concept in rodents | [152,209,263] |
| CRISPR Epigenetic Editing | CRISPR-dCas9 targeting IL-1β/NLRP3 loci; enhancer repression | Long-term silencing of pro-inflammatory genes without DNA cleavage | Lab-stage; in vitro and early in vivo | [217,218,219,220,221,222] |
| Niche Immunomodulation | Anti-IL-1β, anti-TNF, IL-6R antibodies; microglia-specific modulators | Dampens chronic inflammation in neurogenic niches | Several agents in AD, MCI, depression trials | [278,279,280] |
| Extracellular Vesicle (EV) Therapeutics | Engineered EVs carrying miRNAs, BDNF, or IGF-1 cargo | Deliver pro-neurogenic and anti-inflammatory signals | Preclinical; first-in-human safety studies emerging | [203,205,286] |
| Lifestyle & Activity-Based Interventions | Exercise, enriched environment, caloric modulation | Boost endogenous IGF-1/BDNF, reduce inflammatory priming | Multiple human cohort studies and ongoing clinical trials | [239,278] |
| Small-Molecule Neurotrophic Enhancers | TrkB agonists, phosphodiesterase inhibitors | Enhance BDNF signaling, promote synaptic/neurogenic resilience | Early-stage clinical testing, mixed outcomes | [206,238] |
| Microglial State Modulation | CSF1R inhibitors, TREM2 agonists | Shift microglia from pro-inflammatory to reparative states | Preclinical; TREM2 antibodies in Phase 2 AD trials | [207,240] |
| Combinatorial Approaches | NLRP3 inhibitor + exercise; anti-TNF + BDNF mimetics | Target multiple axes (inflammatory and trophic) simultaneously | Conceptual and early preclinical testing | [211,278] |
5. Comparative Perspectives: Human vs. Animal Models
5.1. Adult Neurogenesis: Rodents vs. Humans
5.2. Microglial States Across Species
5.3. Inflammatory Pathways and Neuroimmune Crosstalk
5.4. Intervention Efficacy and Translational Readiness
5.5. Bridging the Gap: Models, Ethics, and Future Outlook (≈150–180 Words)

| Aspect | Rodents (Murine) | Humans | References |
| Adult hippocampal neurogenesis (baseline) | Thousands of new neurons per day in young adult hippocampus; robust measurable pools | Far fewer (hundreds/day in young adults by some estimates); highly variable depending on methodology | [1,2,3] |
| Age of significant decline in neurogenesis |
Detectable decline starting mid-life (12–18 months); still measurable in aged animals | Steep decline reported from middle age; ongoing debate whether residual neurogenesis persists in elderly | [1,2,3] |
| Microglial density and activation state in aging | Well-characterized shift to ‘primed’ phenotype with pro-inflammatory gene expression and reduced phagocytic resolution | Less comprehensive; aged human microglia show pro-inflammatory signatures, distinct subsets identified via single-cell transcriptomics | [108,199] |
| Peripheral immune cell involvement in CNS with age | Increased infiltration of T cells (especially CD8+) into hippocampus and SVZ with aging; enhances IFN-γ tone | Limited but growing evidence; T-cell presence in human hippocampus in aging and neurodegeneration; mechanisms less defined | [124,125] |
| Evidence for exercise or enrichment effects | Exercise and enriched environments robustly increase neurogenesis and improve cognition in mice | Human studies show hippocampal volume increases and cognitive benefits; direct evidence for neurogenesis boost is indirect (MRI, blood biomarkers) | [206,238,278] |
| Inflammasome/NLRP3 activation with age | Strong evidence for NLRP3-driven IL-1β increase in aged rodent hippocampus, reducing neurogenesis | Human post-mortem and transcriptomic studies support NLRP3 upregulation in aging brain; functional causality harder to confirm | [211,212,278] |
| Translational caveats | High plasticity, short lifespan, and controlled environments amplify experimental effects | Human variability, long lifespan, and heterogeneous exposures complicate translation; methodological debates on detecting neurogenesis | [1,2,3] |
6. Integrating Mechanisms with Therapeutics: Toward Rewiring the Aging Brain
6.1. Mechanistic Gaps as Opportunities (~400 Words)
6.2. Translational Roadmap
6.3. Ethical and Clinical Considerations (~400 Words)
7. Conclusion
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Abbreviations
| AD | Alzheimer’s disease |
| AAV | adeno-associated virus |
| BBB | blood-brain barrier |
| BDNF | brain-derived neurotrophic factor |
| CNS | central nervous system |
| CRISPR | clustered regularly interspaced short palindromic repeats |
| CSF | cerebrospinal fluid |
| CX3CL1 | C-X3-C motif chemokine ligand 1 |
| CX3CR1 | C-X3-C motif chemokine receptor 1 |
| DAM | disease-associated microglia |
| DCX | doublecortin |
| DG | dentate gyrus |
| EVs | extracellular vesicles |
| IFN-γ | interferon-gamma |
| IL-1β | interleukin-1 beta |
| IL-18 | interleukin-18 |
| iPSC | induced pluripotent stem cell |
| JAK/STAT1 | janus kinase/signal transducer and activator of transcription 1 |
| MCC950 | nlrp3 inflammasome inhibitor mcc950 |
| MRI | magnetic resonance imaging |
| NLRP3 | nod-like receptor protein 3 |
| NSAID | non-steroidal anti-inflammatory drug |
| NSPCs | neural stem and progenitor cells |
| PET | positron emission tomography |
| PSA-NCAM | polysialylated neural cell adhesion molecule |
| RNA-seq | RNA sequencing |
| SVZ | subventricular zone |
| TBI | traumatic brain injury |
| TNF-α | tumor necrosis factor-alpha |
| TSPO | translocator protein 18 kDa |
| Wnt | wingless-related integration site signaling pathway |
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| Molecule/Pathway | Source / Cell Type | Effect on Neurogenesis | Relevance in Aging | Targeted by (if any) | References |
|---|---|---|---|---|---|
| IL-1β | Activated microglia | Inhibits NSC proliferation and newborn neuron survival; blocks maturation | Chronically elevated with NF-κB/NLRP3 activation; contributes to hostile niche | NLRP3 inhibitors (MCC950, NT-0796), anti-IL-1 drugs | [24,56,57] |
| TNF-α | Activated microglia | Suppresses progenitor proliferation and neuronal differentiation | Increased in microglial ‘primed’ states during inflammaging | TNF pathway blockers | [24,56] |
| IL-6 | Activated microglia/astrocytes | Reduces NSC proliferation; impairs plasticity | Elevated with chronic NF-κB/NLRP3 signaling | Anti-IL-6 agents (exploratory) | [24,56] |
| IFN-γ | Infiltrating CD8+ T cells; activated microglia | Suppresses NSC proliferation; antineurogenic bias | T-cell accumulation in aged niches; drives microglial priming | JAK/STAT inhibitors | [57] |
| NLRP3 inflammasome | Microglia | Sustains IL-1β/IL-18; locks antineurogenic programs | Persistently activated in aging; imprints epigenetic ‘scars’ | Brain-penetrant NLRP3 inhibitors | [56,143] |
| NF-κB | Microglia/astrocytes | Pro-inflammatory transcription; suppresses neurogenesis | Chronically active with oxidative stress; feeds cytokine loop | Pathway modulators (research) | [56,143] |
| Complement (C1q/C3) | Microglia/astrocytes | Accelerated pruning; survival loss of newborns | Heightened with chronic inflammatory tone | Complement inhibitors | [27,145] |
| CX3CL1–CX3CR1 | Neurons → microglia | Maintains microglial quiescence; supports maturation/integration | Protective tone wanes with age; disruption impairs neurogenesis | CX3CR1/CX3CL1 agonists | [55,144,146,150] |
| IGF-1 | Microglia, niche cells | Promotes NSC proliferation and survival | Declines with aging; part of youthful pro-neurogenic secretome | IGF-1 delivery/mimetics | [26,54] |
| BDNF / TrkB | Microglia, neurons | Enhances proliferation, maturation, survival; plasticity | Reduced availability under chronic inflammation | TrkB agonists; BDNF delivery | [26,54] |
| TGF-β | Microglia/astrocytes, niche | Context-dependent; supports homeostasis in youth | Elevated tonic signaling with age constrains neurogenesis | TGF-β tuning (local) | [26,54] |
| IL-10 | Microglia/astrocytes | Pro-neurogenic, supports integration | Protective signals decline with age | Cytokine augmentation | [31] |
| PI3K–Akt / ERK / Wnt–β-catenin | NSCs; microglia-modulated | Downstream pro-neurogenic cascades | Suppressed under inflammatory milieu | Small-molecule activators | [26,141] |
| CD8+ T-cell entry | Peripheral T cells | IFN-γ-mediated suppression of NSCs | Accumulate in aged SGZ/SVZ; feed-forward loop | Blockade of entry/adhesion | [57] |
| Extracellular vesicles (EVs) | Microglia/astrocytes/NSCs | Shift microglial phenotype; support neurogenesis | Therapeutic EVs restore youthful tone | EV-based miR/growth factor delivery | [147,149,152] |
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