Submitted:
01 August 2025
Posted:
05 August 2025
You are already at the latest version
Abstract
Keywords:
1. Introduction
1.1. Dietary Patterns and Health
1.2. Traditional Dietary Pattern Analysis
2. Methods
2.1. Search Strategy and Selection Criteria
2.2. Data Extraction
3. Results
3.1. Search and Selection of Network Studies
3.2. Study Characteristics of Included Network Studies
3.3. Adherence to Methodological Best Practices
3.3.1. Justifications for Using Network Models
3.3.2. Study Design and Causal Inference
3.3.3. Network Estimation and Regularisation
3.3.4. Use and Interpretation of Centrality Metrics
3.3.5. Handing of Non-Normal Data
4. Discussion
4.1. Guiding Principles for Future Research
Principle 1: Selecting Appropriate Models
Principle 2: Aligning Study Designs with Research Questions
Principle 3: Best Practices for Reliable Network Estimation
Principle 4: Valid Interpretation of Network Metrics
Principle 5: Addressing Non-Normality in Dietary Data
4.2. Strengths and Limitations of This Review
4.3. Conclusion
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Abbreviations
| DASH | Dietary Approach to Stop Hypertension |
| PCA | Principal component analysis |
| GGM | Gaussian Graphical Model |
| MGM | Mixed Graphical Model |
| MI | Mutual Information |
| BN | Bayesian Networks |
| EPIC | European Prospective Investigation into Cancer and Nutrition |
| SGCGM | Semiparametric Gaussian copular graphical model |
| RRR | Reduced rank regression |
| MeDi | Mediterranean diet |
| PwMS | People with multiple sclerosis |
| HC | Healthy controls |
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| Method | Algorithm | Linear/Nonlinear | Assumptions | Strengths/Limitations |
|---|---|---|---|---|
| Principal Component Analysis (PCA) | Eigenvalue decomposition | Linear | Assumes normally distributed data, linear relationships between variables, uncorrelated components. | Identifies what dietary patterns exist in a population. Can determine which foods are consumed together in a diet but does not reveal interactions between those foods. |
| Factor Analysis | Factor extraction | Linear | Assumes normally distributed data, linear relationships, data can be grouped into latent factors. | Can identify the underlying dietary factors that explain variations in food intake. However, does not provide information about how particular food interact. |
| Cluster Analysis | k-means, hierarchical clustering | Nonlinear | Assumes defined clusters with similar characteristics and independent observations. | Groups individuals based on their dietary patterns. Useful for segmenting consumers based on dietary patterns. Can handle nonlinear associations between variables. Assumes pairwise similarity or proximity but does not explicitly capture direct or indirect interdependencies among multiple variables. |
| Dietary Index/Scores | Predefined scoring | Linear | Assumes each score represents healthfulness, often based on a reference diet. Each component is typically weighted (sometimes equally), ignoring potential interactions between components. Requires prior knowledge. |
Can identify how closely an individual’s diet aligns with a healthy/reference dietary pattern. |
| Method | Algorithm | Linear/Nonlinear | Assumptions | Strengths/Limitations |
| Gaussian Graphical Models (GGM) | Inverse covariance matrix estimation | Linear | Assumes normally distributed data, linear relationships, sparsity. | Measures the conditional dependencies between different foods. Reveals how certain foods are commonly consumed together, or how foods may displace each other in the diet. Can increase understanding how variables (e.g., foods, nutrients) directly interact, independent of others in the context of the whole diet. Relies on partial correlation matrix and is sensitive to non-normally distributed data. |
| Mixed Graphical Models (MGM) | Combination of GGM and discrete modelling techniques | Both | Assumes mixed data types can be represented in a joint network, requires sparsity. | Can identify direct relationships while accommodating diverse variable types. Standard MGMs assume linear relationships but with extensions such as kernel methods non-linear models can be developed. |
| Mutual Information Network | Information-theoretic methods | Nonlinear | No strict distributional assumptions, assumes mutual information represents dependence. | Uses entropy-based measures to quantify shared information. Reveals how certain foods are commonly consumed together, even in non-linear relationships (e.g., nutrient thresholds or diminishing returns). Similar to GGM but without normality assumption. Does not differentiate direct and indirect associations. |
| Bayesian Networks (BN) | Directed acyclic graphs | Both | Assumes probabilistic relationships between variables. | Provides insights into causality and allows the exploration of causal pathways. Can incorporate prior knowledge for enhanced interpretability. Computationally intensive when discovering unknown networks. |
| Dynamic Networks | Time-varying graph algorithms | Both | Requires longitudinal data with high temporal resolution. | Models time-varying dietary patterns and tracks changes in diet over time. Useful for predicting unintended consequences of interventions. Requires resource-intensive longitudinal data collection for accurate analysis. |
| Hypergraphs | Hyperedge-based graph algorithm | Both | Assumes interactions can involve more than two nodes. | Captures higher-order interactions. Useful for modelling the combined health impact of foods/nutrients which are unable to be explained by pairwise interactions. Computationally demanding and resource intensive. Complexity may affect interpretability. |
| Multilayered Graphs | Layered network construction | Both | Assume information is shared between all layers. | Enables analysis of intra- and inter-layer connections. Valuable for cross-domain analysis. Computationally demanding and complex. Challenging to interpret for large datasets. |
| Author (Year) | Population | Dietary Assessment |
Network Model | Aims | Findings |
|---|---|---|---|---|---|
| Slurink et al. (2023) [61] | 74132 participants (59.7% female) Lifelines cohort study |
Flower-FFQ | Mixed graphical model | To investigate associations of total dairy and dairy types with incident prediabetes. To assess how dairy intake is linked with metabolic risk factors, lifestyle behaviours, and foods, as potential explanations for these associations. |
Low fat milk intake associated with higher prediabetes risk. High-fat yogurt intake had nonsignificant inverse association with prediabetes risk. Heterogenous associations by dairy type and fat content may be due to confounding caused by behaviours and food intake related to dairy intake. |
| Schwedhelm et al. (2021) [52] | 365 women, 12 weeks gestation Chapel Hill Healthcare System, North Carolina |
3 x Automated Self-Administered 24-hour dietary recalls | Semiparametric Gaussian copular graphical model (SGCGM) | To investigate food networks across meals in pregnant women. To explore differences by overall diet quality classification. |
Food combinations differed by meal and between dietary quality tertiles. Meal-specific patterns which differed between diet quality tertiles:
|
| Felicetti et al. (2022) [56] | 424 participants with MS (67% female) 165 healthy controls (68% female) Sant’Andrea Hospital, Rome |
MeDi adequacy questionnaire | Mutual information | To investigate food networks across meals in people with multiple sclerosis (PwMS) and healthy controls (HC). To explore differences by overall diet quality classification. |
Fruit, vegetables, cereal, and fish were identified as hubs in PwMS. Meat and alcohol identified as hubs in HC. PwMS showed overall healthier dietary pattern than HC. Vegetables and fish intake associated with disability outcomes; higher disability status, lower vegetable and fish intake. |
| Samieri et al. (2020) [33] | 1522 participants (73.7% female, 209 with dementia) 3C study |
FFQ | Mutual information | To use network science to model complex diet relationships a decade before onset of dementia in a large French cohort. | Food networks substantially differed between cases and controls. Cases had charcuterie as the main hub, with connections to foods typical of French southwestern diet and snack foods. Controls had several disconnected subnetworks reflecting diverse and healthier food choices. |
| Jayedi et al. (2021) [50] | 850 participants (69% female) Tehran, Iran |
FFQ | Gaussian graphical model (GGM) | To describe dietary networks identified by GGM, representing patterns of dietary intake in a sample of Iranian adults. To investigate the potential associations of these dietary patterns with general and abdominal adiposity. |
Identified 3 dietary networks – healthy, unhealthy, saturated fats. Cooked vegetables, processed meats, and butter central to networks, respectively. Top tertile of saturated fats network score associated with higher likelihood of central obesity by waist-to-hip ratio. No association between dietary network scores and general obesity. |
| Iqbal et al. (2016) [55] | 27120 participants (60% female) EPIC cohort |
FFQ | GGM (results confirmed through SGCGM) | To apply GGMs to derive sex-specific dietary intake networks representing consumption patterns in a German adult population. | Men – 1 major dietary network consisting of red meat, processed meat, cooked vegetables, sauces, potatoes, cabbage, poultry, legumes, mushrooms, soup, and whole-grain breads Women – similar network with addition of fried potatoes. |
| Schwedhelm et al. (2018) [51] | 814 participants (49.5% female) EPIC cohort |
3 24-hour recalls | SGCGM | To estimate and describe meal and habitual dietary networks derived through SGCGMs. To compare relations found in meal networks to the ones present in the habitual network. |
Breakfast network – 5 communities of food groups Lunch and afternoon snacks network – higher variability in food consumption, 6 communities in each networks Dinner network – 2 networks with 5 communities Meal-specific dietary network only partly reflected in habitual network; analysing food consumption on habitual level did not exactly reflect meal level intake. |
| Gunathilake et al. (2022) [59] | 397 participants with cancer (61.5% female), 7477 participants without cancer (63% female) Cancer screening Cohort, South Korea |
FFQ | GGM (also used PCA and RRR) | To investigate the association between dietary communities identified by a GGM and cancer risk. | GGM identified 17 and 16 dietary communities for total and matched populations. For each one-unit increase in SD of community-specific score of community composed of dairy products and bread, there was a reduced cancer risk. Matched population – poultry, seafood, bread, cakes and sweets, and meat byproducts showed significantly reduced risk of cancer. |
| Iqbal et al. (2019) [60] | 22245 participants (61% female) EPIC-Potsdam cohort |
FFQ | GGM (also used PCA) | To investigate the association between previously identified GGMs food intake networks and risk of major chronic diseases as well as intermediate biomarkers in the EPIC-Potsdam cohort. | Higher adherence to GGM Western-type pattern associated with increased risk of type 2 diabetes in women. Adherence to high-fat dairy pattern associated with lower risk of type 2 diabetes in both men and women. |
| Hoang et al. (2021a) [47] | 1049 participants with cancer (76% female), 9728 participants with no cancer (64% female) Korea Cancer Screening cohort |
FFQ | GGM | To identify major dietary patterns of Korean adults using a GGM. To examine the associations between DP scores and prevalence of self-reported cancer. |
Identified 4 networks – principal, oil-sweet, meat, and fruit. Odds of moderate and high consumption of foods in oil-sweet DP for cancer patients were 25% and 34% lower than those with no reported cancer diagnosis. Odds of meat DP consumption was 29% for cancer patients. Increase in odds of fruit DP consumption observed for cancer patients. |
| Jahanmiri et al. (2022) [49] | 850 participants (69% female) Tehran, Iran |
FFQ | GGM | To derive dietary networks and assess their association with metabolic syndrome. | 3 networks – healthy, unhealthy and saturated fats. Adherence to saturated fats network with centrality of butter associated with higher odds of having metabolic syndrome and higher odds of having hyperglycaemia. No significant association observed between healthy and unhealthy networks with metabolic syndrome, hypertension, hypertriglyceridemia, and central obesity. |
| Aguirre-Quezada and Aranda-Ramírez (2024) [45] | 230 students Azogues, Ecuador |
FFQ | GGM | To apply GGMs to derived specific networks for groups of healthy and unhealthy obese individuals that represent the nutritional, psychological, and metabolic patterns in an Ecuadoran population. | Higher carbohydrate intake is associated with lower protein intake. Intake of fibre, proteins, carbohydrates, and fats showed positive relationship with BMI for metabolically unhealthy obese individuals. |
| Hoang et al. (2021b) [48] | 7423 participants (35% female) Cancer Screening Examination cohort |
FFQ | Mixed Graphical Model | To elucidate the complex interrelatedness among dietary intake, demographics, and risk of comorbidities. | Normal and heavy eating significantly associated with increases of at least 20% in the risks of elevated BP, hypertension, and mild kidney impairment. |
| Landaeta-Díaz et al. (2023) [58] | 1242 participants (76.6% female) Chile |
FFQ | GGM | To explore food networks in the Chilean adults sample and in people with anhedonia symptoms. | Intake of fruits, vegetables, and fast foods has central role in sample of Chilean adults. Fruit consumption positively associated with vegetables, negatively associated with fast food. Direction of association maintained in those with anhedonia. Stronger association and central place in network for “pasta, rice & potatoes” and “bread” for anhedonia network |
| Xia et al. (2020) [53] | 2043 matched controls (31% female) for 2043 newly diagnosed non-alcoholic fatty liver disease (30% female) | FFQ | GGM | To construct dietary networks from network science. To explore the associations between complex dietary networks and non-alcoholic fatty liver disease. |
Two major networks in case group. One major network in control group. Results suggest dietary structures are different between case and control groups. |
| Fereidani et al. (2021) [46] | 134 women with breast cancer, 266 hospital controls Tehran, Iran |
FFQ | GGM | To compare food intake networks derived by GGMs for women with and without breast cancer to better understand how foods are consumed in relation to each other according to disease status. | On both principal networks, vegetables, fruits, sweets and fried potatoes were central food groups. For cases, main network consisted of 9 central food groups. For controls, main network consisted of 5 central food groups. Network of cases showed more conditional dependencies between intakes of food groups compared to controls. |
| Gunathilake et al. (2020) [54] | 415 gastric cancer cases (35% female), 830 controls (35% female) NCC Hospital, Korea Cancer Screening cohort |
FFQ | GGM | To apply GGMs to identify dietary patterns. To investigate the associations between dietary patterns and gastric cancer risk in a Korean population. |
Vegetable and seafood network and fruit network associated with decreased risk of GC for whole study population. Those in highest tertile of vegetable and seafood network-specific score had a reduced risk of GC compared to those in lowest tertile. |
| Gunathilake et al. (2021) [57] | 268 patients with GC (36% female), 288 healthy controls (37% female) NCC Hospital, Korea |
FFQ | GGM | To observe the combined effects of GGM-derived dietary patterns and the gastric microbiome on the risk of gastric cancer in a Korean population. | Vegetable and seafood pattern may interact with dysbiosis to attenuate the risk of GC in males. Dairy pattern may interact with dysbiosis to reduce GC risk in females. |
| Author (Year) | Justification for Using Network Models | Study Design and Causal Inference | Network Estimation and Regularisation | Use of Centrality Metrics | Handling of Non-Normal Data |
|---|---|---|---|---|---|
| Slurink et al. (2023) [61] | Used network approach to aid interpretation of regression models by accounting for interrelatedness of risk factor. Holistic approach to aid traditional reductionism methods. |
Does not attempt to make inferences about causality. | Notes that the weaker connections for lifestyle risk factors and food groups being compared to clinical markers may reflect a greater extent of measurement uncertainty. LASSO regularisation method used, tuning parameter 0.5. |
Uses centrality metrics without discussing limitations. Uses strength as it has “shown the greatest stability of centrality indices.” |
N/A |
| Schwedhelm et al. (2021) [52] | Discusses limitations of PCA (only explains small proportion of variability of food intake) and why GGM is a better alternative (reveals patterns of food group combinations specific to each meal). | Does not attempt to make inferences about causality. | Makes inferences despite being the first study to examine associations between foods consumed within meals during pregnancy. Used graphical LASSO method. |
Does not use centrality metrics. | Addresses this by using a semiparametric extension of GGM and excluding food groups consumed in fewer than 5% of meals to avoid over-representation of the relationship between episodically consumed foods eating together on a few occasions. |
| Felicetti et al. (2022) [56] | Network analysis to see complex relations hidden in eating behaviour. Complementary to other research on dietary habits. |
Acknowledged it used cross-sectional data which prevents conclusions being drawn about direct causality. | Does not attempt to draw inferences for clinical research. | Does not use centrality metrics. | N/A |
| Samieri et al. (2020) [33] | Network methods to provide complementary information to other approaches to gain additional insights into food-disease associations and patterns involved in reducing dementia risk. | Does not attempt to make inferences about causality. | Compared the strengths of associations (edge-weights) between the two networks. | Uses centrality metrics without discussing its limitations | N/A |
| Jayedi et al. (2021) [50] | Discusses limitations of PCA (does not demonstrate pairwise correlations between food groups). GGM to show how food groups are consumed in relation to one another. |
Addresses that cross-sectional design is a limitation but does not say why. | Makes inferences despite being first study to investigate association between GGM networks and general and abdominal adiposity in adults. Used graphical LASSO. |
Evaluates food groups belonging to more than one community for centrality to determine importance of a food group based on a number of communities it belongs to. Does not discuss limitation of centrality metrics. |
Mentions that GGMs assume a multivariate normal distribution for underlying data. Does not say this is a limitation or attempt to fix it. |
| Iqbal et al. (2016) [55] | Limitations of existing methods of dietary pattern analysis warrant investigation of complementary approaches. | Does not attempt to make inferences about causality. | Used network stability analysis (repeated bootstrapping 80% of original sample with replacement) – found that identified networks were stable in current population. Used graphical LASSO, tuning parameter 0.25. |
Does not use centrality metrics. | Addresses this limitation. Log-transformed all the data and confirmed results of GGMs with SGCGMs. |
| Schwedhelm et al. (2018) [51] | When using traditional methods, understanding of how dietary patterns arise from food intake is limited. | Does not attempt to make inferences about causality. | Similarities between previous GGMs using participants data from EPIC-Potsdam cohort which used FFQ instead of 24-hour recalls. Used LASSO using cross-validation. |
Used centrality metrics to assist interpretation. Did not discuss limitations. |
Addresses this limitation. Uses SGCGMs instead of GGMs. |
| Gunathilake et al. (2022) [59] | Used GGM to derive communities of dietary networks and evaluate contributions of dietary networks to development of cancer. Used PCA and RRR to compare the identified DPs. |
Attempts to make inferences about causality despite using between-person cross-sectional data. |
Used LASSO regularisation. Optimal λ values for total study population and matched subgroup were 0.32 and 0.34. |
Uses centrality metrics without discussing its limitations. | Log-transformed the weight intake to improve the normal distribution. |
| Iqbal et al. (2019) [60] | Use GGM to investigate relationship between dietary patterns and risk of chronic diseases. Reconstructed PCA patterns to compare the approaches. |
Does not attempt to make inferences about causality. | Does not attempt to draw inferences. Details of regularization were not reported in this paper and referred to a previous publication - graphical LASSO. |
Uses centrality metrics without discussing its limitations. | Applied GGM to log-transformed intakes of food groups. |
| Hoang et al. (2021a) [47] | Discusses limitations of PCA and RRR, strength of one is a limitation of the other. Used GGM to resolve this issue. |
Identified that the “cross-sectional design was not strong enough to identify the temporal and causal relationships between dietary intake and cancer development.” | Makes inferences. LASSO regularisation used, optimum values of 0.48 for total study population, 0.52 for male subgroup, 0.46 for female subgroup. |
Uses centrality metrics without discussing its limitations. | Weight intake values of the food groups were log-transformed to improve normality distribution. |
| Jahanmiri et al. (2022) [49] | PCA and cluster analysis are reduction techniques. GGM a “commanding method” for DPA. |
Acknowledged it used cross-sectional data which prevents conclusions being drawn about a cause-and-effect relationship. | LASSO regularisation used. | Uses centrality metrics without discussing its limitations. | Discusses that the data needs to be “Gaussian-distributed” which is not possible for all variables. Does nothing to counter limitation. |
| Aguirre-Quezada and Aranda-Ramírez (2024) [45] | Previous studies have limitations in analysis. GGMs provide a comprehensive and easy to understand overview of relationships between variables. |
Does not attempt to make inferences about causality. | Graphical LASSO used. Does not choose a regularisation parameter, instead they repeatedly create networks for the different parameters. |
Uses centrality metrics without discussing its limitations. | Acknowledges that data should follow a Gaussian distribution which is not met by all variables. Does nothing to counter limitation. |
| Hoang et al. (2021b) [48] | Conventional approaches have limitations in explaining complex relationships. Network analysis to provide insights into interactions among all variables and explore how a single variable is impacted by multiple factors. |
Acknowledged that it used cross-sectional design which may not have allowed for a full investigation of a causal relationship. | LASSO regularisation with extended Bayesian information criteria selection applied and set at 0.5. Network accuracy assessed by bootstrapping 80% of original sample with a replacement. |
Uses centrality metrics without discussing its limitations. | N/A |
| Landaeta-Díaz et al. (2023) [58] | Previous studies used diet scores which has a limited scope as focuses on representing a conceptual diet but does not show how food relates to each other. GGM represents underlying structure of food groups. |
Does not attempt to make inferences about causality. | Does not use any regularisation techniques. | Uses centrality metrics without discussing its limitations. | Does not acknowledge any limitations of using GGM. Does nothing to fix the limitations. |
| Xia et al. (2020) [53] | Limitations of traditional statistical methods. Network science can help to discover the potential role of food groups in overall dietary pattern, providing new insight into complexity and non-linearity of dietary patterns. |
Does not attempt to make inferences about causality. | Plots were limited to edges with inferred weight >= .30 for better interpretability. | Does not use centrality metrics. | N/A |
| Fereidani et al. (2021) [46] | Limitations of existing methods. GGM patterns show how foods are consumed in different combinations. |
Does not attempt to make inferences about causality. | Used graphical LASSO. λ value of 0.3 chosen and applied for all analyses. |
Does not use standard named centrality metrics (e.g., betweenness, closeness). Defines central food groups as those with a high correlation with 4 or more other food groups. |
Dietary data log-transformed to improve normality. |
| Gunathilake et al. (2020) [54] | Complementary strategy for investigating diet and disease relationships. | Does not attempt to make inferences about causality. | Used graphical LASSO. Optimum λ value of 0.38. |
Used strength as centrality metric, did not discuss limitations. | Discusses that data needs to follow a Gaussian distribution so log transformation should be applied. |
| Gunathilake et al. (2021) [57] | Wanted to assess dietary intake as a pattern rather than a sum of single food items. | Does not attempt to make inferences about causality. | Used graphical LASSO. Optimum λ value of 0.37. |
Used strength as centrality metric, did not discuss limitations. | Log-transformed the dietary intake values. |
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