Submitted:
01 July 2025
Posted:
02 July 2025
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Abstract
Keywords:
Introduction
- Assembly Index (Ai) – the fewest number of steps required to make the molecule
- Copy Number (Ni) – the number of identical molecules counted
2. Materials and Methods
| Quantifiable Food and Food Behavior Categories | |||
| High Complexity Diet | Point Value | Low Complexity Diet | Point Value |
| Farm Direct Animal Product | (+1) | Processed Animal Product | (-1) |
| Fresh Plants | (+1) | Processed Ingredient | (-1) |
| Fermented Foods | (+1) | Refined Ingredient | (-1) |
| Fasting (Autophagy) | (+7) | Ultra-Processed Food | (-1) |
| High Complexity Behavior | Point Value | Low Complexity Behavior | Point Value |
| Social Eating | (+1) | Distracted Eating | (-1) |
| Outside Eating | (+1) | Over consumptive Eating | (-1) |
Data Collection Methods
Collecting the Food Diary
Defining a Point
Grading of High Complexity Variables
Fresh Plant
Farm Direct Animal Product
Fermented Food
Fasting (Autophagy)
Social Eating
Outside Eating
Grading of Low Complexity Variables
Processed Ingredients
Refined Ingredients
Processed Animal Products
Ultra-Processed Foods
Distracted Eating
Over Consumptive Eating
Grading the Food Diary
Survey Distribution
Population
Statistical Analysis
3. Results
Internal Validity
Face Validity
| Complexity Grade for a Generic Ham Sandwich | |||
| Ingredient | Variable | Complexity Grade | Point Value |
| White Bread | Refined Ingredient | Low | (-1) |
| Deli Ham | Processed Animal Product | Low | (-1) |
| Mustard | Processed Ingredient (Food Dye) | Low | (-1) |
| Tomato | Fresh Plant | High | (+1) |
| Lettuce | Fresh Plant | High | (+1) |
| GARD Score = “High Complexity Total” subtracted by “Low Complexity Total” = (-1) | |||
| Category | Variable | Ai (Assembly Index) of Average Molecule | Ni (Copy Number) of Average Molecule | Total |
GARD Score |
| High Complexity |
Fresh Plant | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) |
| Healthy Animal Product | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) | |
| Fermented Food | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) | |
| Autophagy (Fasting) | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) | |
| Low Complexity |
Processed Ingredient | 3 (Low) | 8 (Very High) | 11 | (-1) |
| Refined Ingreient | 2 (Very Low) | 9 (Extremely High) | 11 | (-1) | |
| Processed Animal Product | 7 (High) | 8 (Very High) | 15 | (-1) | |
| Ultra-Processed Food | 1 (Extremely Low) | 9 (Extremely High) | 10 | (-1) |
| Category | Variable | Internal Validity in Assembly Theory |
| High Complexity |
Fresh Plant | Fresh plants contain diverse, complex biomolecules (e.g., polyphenols, fibers) requiring many synthetic steps (Extremely High Ai), with widespread repetition in plant tissue (Extremely High Ni). |
| Farm Direct Animal Product | Whole animal products (meat, seafood) have structured proteins, fats, carbohydrates and nucleic acids (Extremely High Ai) with considerable repetition within a given tissue (Extremely High Ni). | |
| Fermented Food | Fermentation increases biochemical complexity via the presence of microbiotic life (Extremely High Ai) with high molecular repetition within individual bacteria (Extremely High Ni). | |
| Autophagy (Fasting) | Autophagy recycles highly structured biomolecules, organelles, glycogen, fatty acid chains (Extremely High Ai), which exist in repeating cell types with in a tissue (Extremely High Ni). | |
| Low Complexity |
Processed Ingredient | Processed ingredients are designed for easy manufacturing (Low Ai) at large volume (Very High Ni) |
| Refined Ingredient | Industrial processing simplifies molecular structure taking complex biomolecules (i.e. Amylopectin) and turning them into simplified molecules (i.e. Glucose, Fructose) (low Ai) while increasing uniformity and repetition (very high Ni). | |
| Processed Animal Product | Research shows measurable differences in nutritional complexity between processed meat and farm-direct, pasture-raised meat. Specifically, meat from farmers' markets—typically pasture-raised and minimally handled—contains significantly higher levels of omega-3 fatty acids, conjugated linoleic acid (CLA), and fat-soluble vitamins like A and E [54,55]. These nutrients result from the animals’ forage-based diets and shorter storage times, which help preserve delicate compounds and vitamins [56,57]. In contrast, processed meat, while chemically dense and uniform, lacks this diversity and freshness. As a result, since processed meat exhibits contains less complex molecule (high Ai) compared to farm-direct meat, which contains a more varied and functionally rich molecular structure. However, processed meat still retains a high number of repeated molecules through out the tissues (Very High). | |
| Ultra-Processed Food | Ultra-processed foods by definition contain manufactured ingredients (extremely low Ai) and refined ingredients that are mass-produced and highly repetitive (extremely high Ni). |
| Category | Variable | Ai (Assembly Index) of Average Molecule | Ni (Copy Number) of Average Molecule | Total |
GARD Score |
| High Complexity Behavior |
Social Eating | 8 (High) | 8 (High) | 16 | (+1) |
| Outside Eating | 8 (High) | 8 (High) | 16 | (+1) | |
| Low Complexity Behavior |
Distracted Eating | 4 (Low) | 9 (Extremely High) | 13 | (-1) |
| Over-Indulgent Eating | 3 (Very Low) | 9 (Extremely High) | 12 | (-1) |
| Category | Internal Validity in Assembly Theory |
| High Complexity Behavior |
Social eating requires complex social structures, communication, and shared rituals (high Ai). It has been a fundamental aspect of human evolution across cultures and time (high Ni). |
| Eating in dynamic outdoor environments requires physiological adaptation to variable conditions (high Ai). This behavior was the norm for most of human history (high Ni). | |
| Low Complexity Behavior |
Eating while distracted lacks engagement with environmental and social cues, reducing behavioral complexity (low Ai). It is a modern behavior that has become widespread (extremely high Ni). |
| Overeating prioritizes quantity over adaptive responses to hunger and social context, diminishing behavioral complexity (very low Ai). Engineered food environments have made it exceedingly common (extremely high Ni). |
Convergent Validity
Discriminant Validity

External Validity
| NIH: Healthy Meal Planning: Tips for Older Adults | ||
| GARD Score | ||
| Daily Diet (Total GARD score for 3 Meals) |
Store Bought | Farm Bought All Homemade |
| Daily Meal Plan 1 | 16 | 27 |
| Daily Meal Plan 2 | 14 | 22 |
| Daily Meal Plan 3 | 12 | 25 |
| Average | 14 | 23 |
| GARD Score for Daily Mediterranean Diets | ||
| GARD Score | ||
| Daily Diet (Total GARD score for 3 Meals) |
Store Bought | Farm Bought All Homemade |
| Daily Meal Plan 1 | 19 | 27 |
| Daily Meal Plan 2 | 17 | 22 |
| Daily Meal Plan 3 | 7 | 13 |
| Average | 14 | 21 |
| 80% Ultra-Processed Food Diet | ||
| GARD Score | ||
| Daily Diet (Total GARD score for 3 Meals) |
Store Bought | Farm Bought All Homemade |
| Daily Meal Plan 1 | 1 | N/A |
| Daily Meal Plan 2 | -10 | |
| Daily Meal Plan 3 | 1 | |
| Total | -1 | |
| Standard American Diet | ||
| GARD Score | ||
| Daily Diet (Total GARD score for 3 Meals) |
Store Bought | Farm Bought All Homemade |
| Daily Meal Plan 1 | -12 | N/A |
| Daily Meal Plan 2 | -8 | |
| Daily Meal Plan 3 | -9 | |
| Average | -10 | |
4. Discussion
Limitations
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| Ai | Assembly Index |
| Ni | Copy Number |
| FFB | Food and Food Behavior |
| GARD | Guide Against Age-Related Disease |
| UPF | Ultra-Processed Food |
| MoCA | Montreal Cognitive Assessment |
| NIH | National Institutes of Health |
| PUFA | Polyunsaturated Fatty Acid |
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| High Assembly Index (Ai) and High Copy Number (Ni) | |
| DNA polymerase | Enzyme with a complex structure (high Ai) Replicated billions of times in biology (high Ni) |
| Apples | Biological structure: cells, tissues, proteins, pigments (high Ai) Harvested globally (high Ni) |
| The English Language | Evolved over thousands of years and formed by thousands of words (high Ai) Recreated with little variation globally (high Ni) |
| High Assembly Index (Ai) and Low Copy Number (Ni) | |
| Experimental protein designs | Synthetic designed for a novel function (high Ai) Novel Molecule after first synthesis (low Ni) |
| Hand Crafted Pastry | Complex structure involving multiple layers, fillings, and precise techniques (high Ai) Produced in small batches by artisanal bakers (low Ni) |
| The Word "Alacrity" | Thousands of years of culture to create the word (high Ai) Infrequently used (Low Ai) |
| Low Assembly Index and High Copy Number | |
| Water (H₂O) | Often a biproduct on single step organic reactions (Low Ai) Found universally in high abundance (high Ni) |
| High Fructose Corn Syrup | Fructose molecules refined from a source which initially required <15 steps to assemble the carbohydrate (Low Ai);* Produced globally for sweeteners (high Ni) |
| The Sound of a Rock Falling on Impact | Created by a single step process (low Ai) Occurs universally (high Ni) |
| *Refining does not increase Ai as Ai represents the minimal number of steps needed to build an object using reusable parts. | |
| Low Assembly Index and Low Copy Number | |
| Nitric oxide radical (NO•) | Simple molecule often a biproduct (Low Ai) Reactive and short-lived (Low Ni) |
| Snowball | Formed by aggregation of ice crystals via simple mechanical action (Low Ai) Individually formed and short-lived (Low Ni) |
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