Jeju Island’s barren basalt soil makes it impossible to grow rice, so nuruk, a traditional Korean fermentation starter, uses barley instead of wheat or rice to make traditional fermented foods such as Ganjang (soy sauce) and Doenjang (soy paste). Jeju Island, the southernmost island on the Korean Peninsula, also has a unique geographical environment that makes Jeotgal, a fermented food made by pickling fish and shellfish with salt, unique compared to its mainland counterparts. In this study, we analyzed the microbial communities of nine traditional Jeju fermented foods:
Omphalius rusticus Jeotgal (OR),
Spratelloides gracilis Jeotgal (SG),
Chromis notata Jeotgal (CN),
Turbo cornutus Jeotgal (TC),
Trichiurus lepturus intestine Jeotgal (TL),
Branchiostegus japonicus Sweet Rice Punch (BJ), Salted Anchovy Sauce (SA), Jeju Soy Sauce (JSS), and Jeju Soybean Paste (JSP). As shown in the
Supplementary Materials, we found that the
Latilactobacillus sakei group (87.2%) was the dominant species in OA, followed by the
Leuconostoc mesenteroids group (4.9%), and the
Weissella minor group (4.3%). Similar to OA, the dominant species of BJ was the
L. sakei group (53.7%), followed by the
Tetragenococcus halophilus group (29.6%).
T. osmophilus and
T. solitarius, which belong to the
Tetragenococcus phylum, also constituted the microbial community, albeit in a small proportion. Interestingly, CN and TL had extremely large microbial communities with the
T. halophilus group. The
T. halophilus group comprised 96.8% and 71.3% of the microbiome in CN and TL, respectively. Meanwhile, the microbiome of TC was a haven for the
Bacillus phylum. As shown in the supplementary data, TC was dominated by the
B. subtilis group (23.4%), followed by the
B. sonorensis group (19.3%),
B. amyloliquefaciens group (5.6%),
B. licheniformis group (5. 12%),
B. pumilus group (1.8%),
B. altitudinis group (1.6%),
B. clausii group (0.4%),
B. coagulans (0.3%),
B. mojavensis group (0.2%), and other
Bacillus species. SA, a famous Salted Anchovy Sauce in Korea, is a traditional fermented food from Chuja Island, an annexed island of Jeju Island. The SA microbiome was dominated by the
Lentibacillus genus (42.9%) and
Tetragenococcus muriaticus (10.8%), rather than
T. halophilus. Jeju blue beans are indigenous seed beans that grow only in the Seogwipo area, and unlike the yellow meju beans used in fermented foods on the mainland of the Korean Peninsula, they have a blue color. Inevitably, Jeju’s traditional soy sauce, JSS, and soybean paste, JSP, have the distinction of being made with blue beans. Surprisingly, according to the results of the microbial community analysis of JSS and JSP, the
Enterococcus durans group, which was not encountered in the seven fermented foods analyzed earlier, was the dominant species at 14.6% and 32.8%. Enterococci can be found in fermented food products such as cheeses, sausages, olives, and vegetables. Although
E. durans is a Gram-positive coccus implicated as the cause of enteritis in some studies, it has been reported as a potentially safe strain with desirable probiotic and antimicrobial properties. It can also adhere to Caco-2 cells and has cholesterol-lowering effects, DPPH-scavenging activities, and antimicrobial activities against several Gram-positive pathogenic bacteria [
20,
21,
22,
23]. Finally, the dominant species in the SG microbiome were found to be the
T. halophilus group (37.7%) and
Halomonas garicola (32.2%).