Submitted:
20 March 2024
Posted:
21 March 2024
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Materials and Methods
2.1. Sample Collection and Transportation
2.2. Dilution, Plating, and Incubation
2.3. Counting and Characterization
2.4. Identification of the Isolates
2.5. Antimicrobial Susceptibility Testing (AST)
2.6. Statistical Analysis
3. Results
3.1. Contamination Level and Diversity Assessment
3.2. Conventional and Biochemical Tests Identification
3.3. MALDI-TOF-MS Identification
3.4. BD Phoenix™ Identification Test
3.5. AST by BD Phoenix™
4. Discussion
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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| Isolate Code | Total No. of Colonies | (%) | Gram Staining (+/-) |
Microscopic Morphology | Catalase Test (+/-) |
Glucose Test | Arabinose Test | MSA Test | MAC Test | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GP | F | GP | F | GP | F | GP | F | ||||||
| 1W | 10,463 | 74.918 | + | Clusters Cocci | +++ | - | ++ | - | + | +++ | ++ | - | - |
| 2C | 1,383 | 9.903 | + | Paired Cocci | ++ | - | ++ | - | ++ | - | - | + | brown |
| 3Y | 1,221 | 8.743 | + | Clusters Cocci | +++ | - | + | - | + | ++ | - | - | - |
| 8O | 143 | 1.024 | + | Clusters Cocci | +++ | - | ++++ | - | + | ++ | ++ | - | - |
| 17DO | 100 | 0.716 | + | Streptobacillus | + | - | ++ | - | + | - | - | - | - |
| 16WBCI | 71 | 0.508 | + | Sporulating Bacillus | + | - | ++ | - | + | ++ | ++ | - | - |
| 12BO | 56 | 0.401 | + | Streptococci | + | - | ++ | - | ++ | - | - | - | - |
| 5WSF | 23 | 0.165 | + | Cocci | +++ | - | + | - | +++ | +++ | ++ | ++ | ++ |
| 19FF | 23 | 0.165 | + | Bacillus | + | - | ++ | - | ++++ | ++ | ++ | - | - |
| 9TO | 14 | 0.100 | + | Oval | ++ | - | + | - | + | - | - | - | - |
| 6WBF | 13 | 0.093 | + | Rod | ++ | - | + | - | +/- | +++ | + | - | - |
| 10RY | 13 | 0.093 | + | Clusters Cocci | +++ | - | + | - | + | ++ | - | - | - |
| 5RW | 6 | 0.043 | + | Sporulating Bacillus | ++ | - | + | - | + | - | - | ++ | ++ |
| 11T | 3 | 0.021 | + | Streptobacillus | +++ | - | +++ | - | + | ++ | - | - | - |
| YBB | 2 | 0.014 | + | Cocci | ++++ | - | + | - | + | - | - | - | - |
| 7R | 1 | 0.007 | + | Cocci | +++ | - | + | - | + | + | - | - | - |
| 13FW | 1 | 0.007 | + | Bacillus | ++ | - | + | - | + | ++ | ++ | - | - |
| Isolate Code | Expected Bacterial Strain | *Unknown Isolate MULDI-TOF Score |
|---|---|---|
| 1W | Staphylococcus haemolyticus | 2.18 (+++) |
| 2C | Staphylococcus kloosi | No Matching |
| 3Y | Micrococcus leuteus | 1.97 (+) |
| 8O | Staphylococcus pasteuri | 1.85 (+) |
| 11T | Bacillus clausii | 1.92 (+) |
| 7R | Streptomyces violaceoruber | 1.86 (+) |
| Isolate Code | Total Number of Colonies in All Malls | Prevalence Percentage (%) |
Unknown Isolate Best Match |
|---|---|---|---|
| M4: ♀W2 | 26,780 | 87.35 | Klebsiella pneumoniae |
| M1: ♀T1 | 2,680 | 8.74 | Pseudomonas aeruginosa |
| M3: ♀ T2 | 80 | 0.26 | Pantoea agglomerans |
| M2: ♀ S1S2A | 660 | 2.15 | Acinetobacter baumanii |
| M3: ♀S2A | 460 | 1.50 | Acinetobacter lwoffii/haemolyticus |
| Isolate Code | PHOENIX ID |
|---|---|
| 1W | Staphylococcus haemolyticus |
| 2C | N/A |
| 3Y | Micrococcus leuteus |
| 8O | Staphylococcus pasteuri |
| 11T | N/A |
| 7R | Streptomyces violaceoruber |
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