Submitted:
20 December 2023
Posted:
22 December 2023
You are already at the latest version
Abstract
Keywords:
1. Introduction
2. Related Works
3. The Domain Specific Medicine Dictionary (DSMD) and Its Construction
3.1. Concepts and Relations
3.2. The Hierarchical Structure and Inheritance
3.3. Prototype Dictionary

3.4. Brief Description of the Dataset

3.5. Data Processing
3.6. Dealing With Uncertainties
4. Experiments


4.1. Comparison with other works
5. Applications
5.1. Medicine Comparison
5.2. Brand Information Extraction

5.3. Alternative Medicine Information Extraction
5.4. Question Answering



5.5. A Brief Overview of Information Extraction and Question Answering
Medicine Information
- Medicine brand information by searching a medicine brand name such as ’A-Cof’.
Specific Information about a Particular Medicine Brand
- Generic name: ’A-Cof’, ’generic name is’
- Medicine type: ’A-Cof’, ’type of’
- Dosage form: ’A-Cof’, ’has dosage form’
- Strength: ’A-Cof’, ’has strength of’
- Manufacturer: ’A-Cof’, ’manufactured by’
- Pharmacology description: ’A-Cof’, ’pharmacology description’
- Side effects: ’A-Cof’, ’side effects’
- Alternative brand: ’A-Cof’, ’alternative brand’
Yes or No Answers
- generic_name_is(A-Cold, Bromhexine Hydrochloride)
- type_of(A-Cold, allopathic)
- has_dosage_form(A-Cold, Syrup)
- has_strength_of(A-Cold, 4 mg/5 ml)
- manufactured_by(A-Cold, ACME Laboratories Ltd.)
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| DSMD | Domain Specific Medicine Dictionary |
| KG | Knowledge Graph |
| KRL | Knowledge Representation Learning |
| KGE | Knowledge Graph Embedding |
References
- Assorted Medicine Dataset of Bangladesh. Available online: https://www.kaggle.com/datasets/ahmedshahriarsakib/assorted-medicine-of-bangladesh. Ahmed Shahriar Sakib, 2020. (Accessed on: 20-07-2023).
- S.A. Khanam, F. Liu, P.Y. Chen. Comprehensive structured knowledge base system construction with natural language presentation, Hum. Cent. Comput. Inf. Sci. 9 (2019). [CrossRef]
- Shaoxiong Ji, Shirui Pan, Erik Cambria, Pekka Marttinen, and Philip S. Yu. A Survey on Knowledge Graphs: Representation, Acquisition, and Applications. IEEE, 2021. [CrossRef]
- Fei Liu, Shirin Akther Khanam, Yi-Ping Phoebe Chen. A Human-Machine Language Dictionary. https://www.atlantis-press.com/journals/ijcis. [CrossRef]
- G. Miller, R. Beckwith, C. Fellbaum, D. Gross, K. Miller, WordNet: an on-line lexical database, Int. J. Lexicogr. 3 (2000), 235–244. [CrossRef]
- Charlotte Kvist Ekelund, Tine Iskov Kopp, Ann Tabor, Olav Bjørn Petersen (2016) The Danish Fetal Medicine database, Clinical Epidemiology, 8:, 479-483. [CrossRef]
- Baiqing Li, Chunfeng Ma, Xiaoyong Zhao, Zhigang Hu, Tengfei Du, Xuanming Xu, Zhonghua Wang, Jianping Lin. YaTCM: Yet another Traditional Chinese Medicine Database for Drug Discovery. [CrossRef]
- Fan Gong a, Meng Wang b,c, Haofen Wang d, Sen Wang e, Mengyue Liu f. SMR: Medical Knowledge Graph Embedding for Safe Medicine Recommendation. 2021.
- W.-Q. Wei, R.M. Cronin, H. Xu, T.A. Lasko, L. Bastarache, J.C. Denny Development and evaluation of an ensemble resource linking medications to their indications. J. Am. Med. Inform. Assoc., 20 (5) (2013), pp. 954-961.
- David Chang, Ivana Balažević, Carl Allen, Daniel Chawla, Cynthia Brandt, and Richard Andrew Taylor. Benchmark and Best Practices for Biomedical Knowledge Graph Embeddings. 2020. [CrossRef]
- X. Chen, S. Jia, and Y. Xiang, “A review: Knowledge reasoning over knowledge graph,” Expert Syst. Appl., vol. 141, Mar. 2020, Art. no. 112948. [CrossRef]
- H. Liu, P. Singh, ConceptNet - a practical commonsense reasoning tool kit, BT Technol. J. 22 (2004), 211–226.
- Lehmann J, Isele R, Jakob M, Jentzsch A, Kontokostas D, Mendes PN, Hellmann S, Morsey M, van Kleef P, Auer S, Bizer C (2015) DBpedia—a large-scale, multilingual knowledge base extracted from Wikipedia. Sem Web J 6(2):167–195. [CrossRef]
- Weijie Liu, Peng Zhou, Zhe Zhao, Zhiruo Wang, Qi Ju, Haotang Deng, Ping Wang. K-BERT: Enabling Language Representation with Knowledge Graph. AAAI, 2020. [CrossRef]
- Byeongmin Choi, YongHyun Lee, Yeunwoong Kyung, and Eunchan Kim. ALBERT with Knowledge Graph Encoder Utilizing Semantic Similarity for Commonsense Question Answering. Tech Science Press, 2022. [CrossRef]
- Anson Bastos, Abhishek Nadgeri, Kuldeep Singh, Isaiah Onando Mulang’, Saeedeh Shekarpour, Johannes Hoffart, Manohar Kaul. RECON: Relation Extraction using Knowledge Graph Context in a Graph Neural Network. ACM, 2021.
- Shihui Yang, Jidong Tian, Honglun Zhang, Junchi Yan, Hao He, and Yaohui Jin. TransMS: Knowledge Graph Embedding for Complex Relations by Multidirectional Semantics. IJCAI, 2019.
- Ying Shen , Ning Ding, Hai-Tao Zheng , Yaliang Li, and Min Yang. Modeling Relation Paths for Knowledge Graph Completion. IEEE, 2021. [CrossRef]
- Zhiqing Sun, Zhi-Hong Deng, Jian-Yun Nie, Jian Tang. ROTATE: KNOWLEDGE GRAPH EMBEDDING BY RELATIONAL ROTATION IN COMPLEX SPACE. ICLR, 2019.
- Ines Chami, Adva Wolf, Da-Cheng Juan, Frederic Sala, Sujith Ravi and Christopher Re. Low-Dimensional Hyperbolic Knowledge Graph Embeddings. arXiv:2005.00545v1 [cs.LG] 1 May 2020.
- Feiyang Wang, Zhongbao Zhang, Li Sun, Junda Ye, Yang Yan. DiriE: Knowledge Graph Embedding with Dirichlet Distribution. ACM, 2023.
- Ivana Balaževic´, Carl Allen, Timothy Hospedales. Multi-relational Poincaré Graph Embeddings. ACM, 2019.
- Hussein Baalbakia, Hussein Hazimehb, Hassan Harbc, and Rafael Angarita. TransModE: Translational Knowledge Graph Embedding Using Modular Arithmetic. Science Direct, 2022. [CrossRef]




| DBpedia | WordNet | ConceptNet | NLIKR | DSMD | |
|---|---|---|---|---|---|
| Meaningful and well-structured properties | N | N | N | Y | Y |
| Allows Inheritance | N | Y | N | Y | Y |
| Allows Queries between two words | Y | N | N | Y | Y |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).