Submitted:
25 November 2023
Posted:
28 November 2023
You are already at the latest version
Abstract
Keywords:
1. Introduction
1.1. Database
1.2. Molecular Representation
1.3. AI Model
2. Materials and Methods
2.1. Database Generation
2.2. Data Preprocessing
2.2.1. Curve Fitting:
2.2.2. Clustering:
2.3. AI Model and Training
2.3.1. Fingerprint:
2.3.2. Training:
2.3.3. Algorithm:
2.3.4. MD Simulations:
3. Results and Discussion
4. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| MD | Molecular Dynamics |
| QM | Quantum Mechanics |
| ML | Machine Learning |
| CCS | Chemical Compound Space |
| DFT | Density Functional Theory |
| DL | Deep Learning |
| AI | Artificial Intelligence |
| LMO | Lithium Manganese Oxide |
| HOIPs | Hybrid Organic-Inorganic Perovskites |
| OQMD | Open Quantum Materials Database |
| ICSD | Inorganic Crystal Structure Database |
| ANNs | Artificial Neural Networks |
| SVR | Support Vector Regression |
| QE | Quantum Espresso |
| EC | Ethylene Carbonate |
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| Properties | Value Method |
|---|---|
| XC Functional | PBE |
| Convergence Tolerance | |
| W.F. Cutoff | |
| Charge Cutoff | |
| Maximum Force | |
| Smearing Factor |
| Properties | Description/Specification |
|---|---|
| Energy minimization | Conjugate gradient for steps |
| Equilibrium | 1ns NVT run and 10ns NPT run |
| Production run | 10ns |
| Motions integrator | Stoermer-Verlet, 1 fs time-step |
| Temperature coupling | C, Nose-Hoover thermostat |
| Pressure coupling | 1 bar, Parrinello-Rahman barostat |
| Constraint solver | Constraining all bonds |
| Periodic boundary | x, y and z directions |
| Long-range interactions | Ewald summation with accuracy |
| Trajectory output | Every 1,000 time-step (fs) |
| Neighbor list updating | Every 10 fs |
| Dynamic load balance | Yes |
| Interaction Type | Potential Style | Equation |
|---|---|---|
| Nonbonded | Buckingham/Coulombic | |
| Bonded | Harmonic | |
| Angle | Harmonic | |
| Dihedral | Quadratic | |
| Improper | Harmonic |
| Element Name | Partial Charge | R2 (A) | R2 (B) | R2 (C) |
|---|---|---|---|---|
| Carbon | -0.4656 | 100.00% | 97.75% | 94.18% |
| Carbon | -0.0257 | 100.00% | 97.75% | 94.18% |
| Carbon | 0.7305 | 99.15% | 96.15% | 94.18% |
| Carbon | -0.3101 | 100.00% | 97.75% | 94.18% |
| Carbon | -0.0714 | 100.00% | 97.75% | 94.18% |
| Hydrogen | 0.222 | 37.19% | 76.07% | 47.82% |
| Hydrogen | 0.4053 | 31.15% | 99.83% | 11.42% |
| Hydrogen | 0.1899 | 37.19% | 76.07% | 47.82% |
| Hydrogen | 0.1968 | 37.19% | 76.07% | 47.82% |
| Hydrogen | 0.4153 | 31.15% | 99.83% | 11.42% |
| Hydrogen | 0.1783 | 37.19% | 76.07% | 47.82% |
| Oxygen | -0.3745 | 99.75% | 98.94% | 98.04% |
| Oxygen | -0.711 | 98.91% | 98.94% | 98.04% |
| Oxygen | -0.5357 | 98.91% | 98.94% | 98.04% |
| Oxygen | -0.2865 | 99.75% | 98.94% | 98.04% |
| Density | Experimental | This Work | Error |
|---|---|---|---|
| H2O | 0.99 | 0.95 | 4.04% |
| Octane | 0.7 | 0.73 | 4.29% |
| Ethanol | 0.79 | 0.78 | 1.27% |
| EC | 1.33 | 1.42 | 6.77% |
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