Submitted:
06 October 2023
Posted:
09 October 2023
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Abstract
Keywords:
1. Introduction
2. Materials and Methods
2.1. Genome Analysis
2.2. Cultivation of the Strain
2.3. Determination of Phytotoxicity
2.4. Study of Antiviral Activity
3. Results and Discussion
3.1. Morphological Features of the Strain
3.2. Taxonomic Positioning of the Strain SCPM-O-B-9993
3.3. Analysis of the Pangenome of Streptomyces Carpaticus Strain SCPM-O-B-9993 and Its Closest Relatives
3.4. Functional Annotation of Streptomyces Carpaticus Strain SCPM-O-B-9993
3.5. Evaluation of Productivity, Phytostimulatory and Antiviral Properties of the Strain
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Genome size, bp | GC content, % | |
|---|---|---|
| Streptomyces carpaticus SCPM-O-B-9993 | 5,968,715 | 72.84 |
| Streptomyces harbinensis NA02264 | 5,802,668 | 72.89 |
| Streptomyces xiamenensis 318 | 5,961,402 | 72.02 |
| Streptomyces sp. XC2026 | 5,836,896 | 72.10 |
| ANI value, % | DDH value, % | |
|---|---|---|
| Streptomyces harbinensis NA02264 | 98.71 | 90.90 |
| Streptomyces xiamenensis 318 | 87.05 | 60.50 |
| Streptomyces sp. XC 2026 | 86.87 | 58.00 |
| ANI value, % | DDH value, % | |
|---|---|---|
| Streptomyces harbinensis NA02264 | 99.03 | 96.20 |
| Streptomyces carpaticus SCPM-O-B-9993 | 98.72 | 90.40 |
| Type | Most similar known cluster | Position, from | Position, to | Cluster length, bp |
|---|---|---|---|---|
| NRPS | ohmyungsamycin A/ohmyungsamycin B | 345,372 | 455,838 | 110,466 |
| T1PKS | pellasoren | 526,710 | 571,823 | 45,113 |
| ectoine | ectoine | 1,213,541 | 1,223,945 | 10,404 |
| NRPS | coelibactin | 5,391,062 | 5,451,702 | 60,640 |
| T3PKS | naringenin | 5,831,966 | 5,873,087 | 41,121 |
| NAPAA, terpene | ε-Poly-L-lysine | 5,878,144 | 5,925,132 | 46,988 |
| Incubation time, h | Number of plants without symptoms of infestation | |||||
|---|---|---|---|---|---|---|
| S. carpaticus SCPM-O-B-9993 | К+ | К- | ||||
| pcs. | % | pcs. | % | pcs. | % | |
| 24 | 0 | 0 | ND | - | ND | - |
| 48 | 0 | 0 | ND | - | ND | - |
| 72 | 10 | 100 | ND | - | ND | - |
| 96 | 9 | 90 | 4 | 40 | 0 | 0 |
| 120 | 8 | 80 | ND | - | ND | - |
| 144 | 6 | 60 | ND | - | ND | - |
| 168 | 5 | 50 | ND | - | ND | - |
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