In this field pot study, effect of drainage method (e.g., intermittent drainage (ID) and continuous flooding (CF)) on greenhouse gas (GHGs: CO2 and CH4) emission was determined from three Korean paddies (BG, MG, and JS series), varying soil properties such as soil texture, labile carbon, and mineral types. Emission of GHGs was evidently influenced by the irrigation, to a different extent, depending on paddy’s redox (Eh) shift upon flooding events. The Eh decline upon flooding was slower in JS pot, where pore-water concentration of ferric and sulfate ions is the highest (~ up to 3-fold) among three paddies. MG pot was 2- to 3-fold percolative than others and the Eh drop during flooding period was the smallest (staying above -50 mV). In ID treatment, CH4 emission (t CO2-eq ha-1 yr-1) was reduced in a wide range by 5.6 for JS pot, 2.08 for BG pot, and 0.29 for MG pot relative to CF, whereas CO2 emissions (t CO2-eq ha-1 yr-1) was increased by 1.25 for JS pot, 1.07 for BG pot, and 0.48 for MG pot due to the enhanced oxidation of labile carbon. Grain yield and aboveground biomass production from ID were no less than those from CF (p < 0.05). Consequently, gain of global warming potential (S GWP) by ID varied as the order of JS (37%) > BG (14%) > MG (~0 %) pots, and negligible effect observed for MG pot is due to the equivalent trade-off between CO2 and CH4. Our findings suggest that the efficacy of ID practice on GHGs emission can be further improved by the consideration of redox response of paddy system.