Based on the deployment of global innovation value chain, the article analyzes the existing independent innovation capability of Guangzhou, and analyzes in detail from innovative talents, innovation system, innovation culture and innovation environment. The role of the central city of Guangzhou has led to research on issues such as the common development of cities in Guangdong and the Pearl River Delta. Using the combination of qualitative analysis and quantitative analysis, we can find out the shortcomings of Guangzhou's independent innovation capability, explore the causes of problems, and seek solutions to the main problems.