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Prognostic Value of EEF1A1 and Its Correlation with Immune Regulation in Kidney Renal Clear Cell Carcinoma

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02 June 2026

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04 June 2026

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Abstract
Background: Eukaryotic translation elongation factor 1 alpha 1(EEF1A1) primarily participates in protein synthesis by binding aminoacyl-tRNA complexes to facilitate peptide chain elongation on ribosomes. Its expression and functional roles exhibit significant heterogeneity across various malignancies, exerting dual regulatory effects as both an oncogene and a tumor suppressor. This study aims to investigate the potential prognostic value and tumor-suppressive role of EEF1A1 in Kidney renal clear cell carcinoma (KIRC). Methods: We analyzed the differential expression of EEF1A1 in KIRC and its correlation with patient prognosis based on TCGA, GEO, and HPA databases. The STRING and GEPIA databases were utilized to perform functional enrichment analysis of its interacting proteins and co-expressed genes. The xCell algorithm was employed to assess the correlation between EEF1A1 and immune cell infiltration, immune checkpoints, and immunomodulatory molecules. Furthermore, drug sensitivity analysis was conducted to evaluate its clinical application potential. Finally, the expression of EEF1A1 in 786-0 and A498 cell lines were validated via qRT-PCR and Western Blotting. Furthermore, CCK-8, wound healing, and Transwell migration/invasion assays were performed to evaluate cell proliferation, migration, and invasion, respectively. Results: EEF1A1 was significantly downregulated in KIRC tissues and cell lines, and its expression level was closely associated with clinicopathological features and prognosis of patients. GO, KEGG, and GSEA enrichment analyses revealed that low EEF1A1 expression is intimately linked to immunosuppressive pathways. Further immunological analysis confirmed significant correlations between EEF1A1 and various immune cell infiltrates, immune checkpoints, tumor-infiltrating lymphocytes, and immunomodulatory molecules. Moreover, cells with high EEF1A1 expression exhibited increased sensitivity to anti-tumor drugs, with expression levels negatively correlated with inhibitory activity (IC50). Finally, overexpression of EEF1A1 significantly inhibited the proliferation, migration, and invasion of clear cell renal cell carcinoma cells. Conclusion: EEF1A1 is downregulated in KIRC and functions as a tumor suppressor. It correlates with TNM stage, grade, and prognosis, and is involved in immune and metabolic pathways. EEF1A1 serves as a prognostic biomarker and indicator of immune microenvironment and drug sensitivity, providing potential targets for advanced KIRC treatment.
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1. Introduction

Kidney renal clear cell carcinoma (KIRC), an adenocarcinoma originating from the tubular epithelial cells of the renal parenchyma, is among the most prevalent malignant tumors worldwide. It accounts for approximately 70%-80% of all renal cell carcinoma (RCC) cases and represents the most clinically aggressive histological subtype[1]. Despite significant advancements in diagnostic and therapeutic modalities in recent years, the incidence and mortality rates of KIRC remain high, with a mortality rate ranging from 30% to 40% and a notably higher incidence in males compared to females[2]. Consequently, identifying effective early-stage prognostic biomarkers and discovering novel therapeutic targets are of paramount clinical importance for improving early diagnosis and patient outcomes in KIRC. Eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) is the second most abundant protein in cells after actin and serves as a core subunit of the eukaryotic elongation factor 1 (EEF1) complex. Its canonical translation function involves binding with GTP to form a complex that facilitates the delivery of aminoacyl-tRNAs to the ribosome, thereby promoting polypeptide chain elongation[3]. Beyond its classical role in translation, EEF1A1 is extensively involved in critical biological processes, including cytoskeleton remodeling, DNA damage repair, signal transduction, and tumor immune evasion. It plays a pivotal regulatory role in the proliferation, migration, invasion, and drug resistance of various cancer cells[4][10]. Previous studies have demonstrated the diverse oncogenic roles of EEF1A1 across multiple malignancies. In pancreatic cancer, EEF1A1 interacts with FBXO32 to activate FAK signaling, thereby driving cancer progression and metastasis[11]. In hepatocellular carcinoma, it activates the transcription factor SP1, which upregulates HGF and triggers the PI3K/AKT pathway to promote epithelial-mesenchymal transition (EMT) and metastasis[12]. In non-small cell lung cancer (NSCLC), EEF1A1 binds to the long non-coding RNA CRYBG3, facilitating its nuclear translocation and the subsequent upregulation of MDM2; this enhances cell migration via the MDM2/MTBP/ACTN4 axis[13]. Conversely, in triple-negative breast cancer (TNBC), the binding of EEF1A1 with penicillide-like compounds inhibits the expression of downstream effectors RPL27A and RPLP0, leading to the induction of apoptosis and the suppression of invasion and migration[14].
However, the specific role of EEF1A1 in KIRC remains poorly understood. In this study, we performed a systematic bioinformatic analysis to investigate the prognostic value, clinical features, biological functions, and immune infiltration patterns of EEF1A1 in KIRC, as well as its correlation with drug sensitivity. Subsequently, the expression levels of EEF1A1 were validated in 786-0 and A498 cell lines using qRT-PCR and Western blotting. Finally, we established 786-0 and A498 cell lines with stable EEF1A1 overexpression. CCK-8, wound healing, and Transwell migration and invasion assays were performed to evaluate the effects of EEF1A1 on the proliferation, migration, and invasion of KIRC cells.

2. Materials and Methods

2.1. Data Collection and Preprocessing

Transcriptomic profiles and corresponding clinical data for 601 KIRC samples (529 tumor tissues vs 72 normal tissues) were retrieved from the TCGA database (https://cancergenome.nih.gov/). For external validation, three independent datasets (GSE66272, GSE36895, and GSE53757) were downloaded from the GEO database (https://www.ncbi.nlm.nih.gov/geo/).

2.2. Pan-cancer Expression Analysis of EEF1A1

The mRNA expression levels of EEF1A1 across various cancer types in the TCGA pan-cancer cohort were evaluated using the Gene_DE module of TIMER2.0 (http://timer.cistrome.org/). Differential expression between tumor and corresponding normal tissues was further corroborated using the Xiantao Academic Platform.

2.3. Expression and Clinicopathological Correlation Analysis in KIRC

The expression differences of EEF1A1 between KIRC and normal tissues were analyzed and visualized using R packages (ggpubr, ggplot2). The correlation between EEF1A1 expression and clinicopathological parameters—including age, gender, TNM stage, and pathological grade was investigated. Protein expression levels and subcellular localization were evaluated via immunohistochemistry (IHC) staining data from the Human Protein Atlas (HPA) (https://www.proteinatlas.org/).

2.4. Prognostic Value and DNA Methylation Analysis

Survival analysis was performed using the survival (v3.8.6) and rms (v8.1.0) R packages. The impact of EEF1A1 expression on overall survival (OS), disease-specific survival (DSS), and progress-free interval (PFI) was assessed using Kaplan-Meier curves and univariate/multivariate Cox regression analyses. A nomogram model was constructed to predict survival probability, with accuracy validated by calibration curves. Furthermore, the relationship between EEF1A1 methylation levels and prognosis was explored using the MethSurv database.

2.5. PPI Network, Hub Gene Identification, and Functional Enrichment

Protein-protein interaction (PPI) partners were predicted using the STRING database (https://www.string-db.org/) with a confidence score threshold of 0.40 and a maximum of 40 interactors. The network was visualized using Cytoscape software. The top 100 co-expressed genes were identified via the GEPIA database (http://gepia.cancer-pku.cn/), and the CytoHubba plugin was employed to extract core (Hub) genes. Correlation analysis between EEF1A1 and these Hub genes was conducted. Functional characterization was performed through GO and KEGG enrichment analyses of co-expressed genes, supplemented by Gene Set Enrichment Analysis (GSEA) based on TCGA-KIRC data to identify associated biological processes and signaling pathways.

2.6. Immune Infiltration, Checkpoints, and Immunomodulatory Analysis

The xCell algorithm was utilized to estimate the correlation between EEF1A1 expression and the infiltration levels of 33 immune cell types. The ESTIMATE algorithm was applied to calculate Immune, Stromal, and ESTIMATE scores. Relationships between EEF1A1 and immune checkpoints, tumor-infiltrating lymphocytes, immunomodulators (inhibitors, stimulators, and MHC molecules), and chemokines/receptors were analyzed using R and the TISIDB database.

2.7. Drug Sensitivity Analysis

Pharmacological sensitivity data were obtained from the CellMiner™ database. After normalization, the Wilcoxon rank-sum test was used to compare the half-maximal inhibitory concentration (IC50) of drugs from the GDSC database between high- and low-EEF1A1 expression groups. Spearman correlation analysis was performed to identify drugs whose inhibitory activity significantly correlated with EEF1A1 expression levels.

2.8. Cell Culture and Establishment of Stable EEF1A1-Overexpressing Cell Lines

786-0 and A498 cells were cultured in RPMI-1640 and MEM media, respectively, both supplemented with 10% fetal bovine serum (FBS). The stable EEF1A1-overexpressing KIRC cell lines and their corresponding negative controls were constructed by Xiamen Yimo Biotech Co., Ltd. (Xiamen, China). Briefly, the full-length human EEF1A1 coding sequence was cloned into the pcDNA3.1 eukaryotic expression vector. The recombinant plasmids and empty vectors were then stably transfected into 786-0 and A498 cells, followed by selection with puromycin to obtain stable cell clones. The efficiency of EEF1A1 overexpression was validated via qRT-PCR and Western blotting. The primer sequences used are listed in Table 1.

2.9. qRT-PCR and Western Blotting

qRT-PCR and Western blot were performed to detect the mRNA and protein expression levels of EEF1A1 in KIRC cell lines (786-0 and A498) and normal renal tubular epithelial cells (HK-2), so as to verify the results of bioinformatics analysis. After constructing EEF1A1 stably overexpressing cell lines (786-0 and A498), the overexpression efficiency was evaluated using the same methods.
Total RNA was extracted from the above cells and reverse-transcribed into first-strand cDNA for subsequent qRT-PCR analysis. Amplification was performed using a QuantStudio 5 (Q5) real-time PCR system under the following conditions:pre-denaturation at 95°C for 120 s, followed by 40 cycles of denaturation at 95°C for 15 s, annealing at 60°C for 15-30s, and extension at 72°C for 30s. The relative gene expression level was calculated using the 2-ΔΔCT method.
Western blotting was performed after qRT-PCR. Cells(786-0, A498, and corresponding EEF1A1-overexpressing cells) were collected and lysed using lysis buffer to extract total protein. Protein samples were mixed with loading buffer, denatured by boiling, separated by SDS-PAGE, and then transferred onto 0.45µm PVDF membranes. The membranes were blocked with 5% bovine serum albumin (BSA) to reduce non-specific binding, followed by incubation with EEF1A1-specific primary antibody. After washing, the membranes were incubated with horseradish peroxidase (HRP)-conjugated secondary antibody. Finally, protein signals were detected by film exposure using enhanced chemiluminescence (ECL) reagent.

2.10. Cell Viability Assay (CCK8)

EEF1A1-stably overexpressing 786-0 and A498 cells were seeded into 96-well plates at a density of 2000 cells per well, with triplicate wells set for each group. At 0, 24, 48, 72, and 96 hours post-seeding, 10µL of CCK-8 reagent was added to each well, followed by incubation for 2 hours. The absorbance (OD value) at 450nm was measured using a microplate spectrophotometer. Cell growth curves were subsequently constructed, and cell viability in each group was calculated accordingly.

2.11. Wound Healing Assay

EEF1A1-stably overexpressing 786-0 and A498 cells were seeded into 6-well plates and cultured until they reached approximately 90% confluence. Three to four parallel scratches were made across each well using a 200µL pipette tip. After washing away detached cells with sterile PBS, the medium was replaced with fresh serum-free medium. Images of the scratched areas were captured using an inverted microscope at 0 and 24 hours after scratching.

2.12. Transwell Migration and Invasion Assay

EEF1A1-stably overexpressing 786-0 and A498 cells were subjected to serum starvation for 12 hours, then trypsinized and resuspended in serum-free medium to a density of 1*105cells/mL. For the migration assay, 200µL of cell suspension was added to the upper chamber, while the lower chamber was filled with 600µL of complete medium containing 10% FBS. For the invasion assay, the bottom of the insert was pre-coated with 70µL of diluted Matrigel and incubated at 37°C for 1 hour to solidify before the addition of the cell suspension. Both assays were incubated at 37°C for 24 to 48 hours. After incubation, the inserts were washed with PBS, fixed with 4% fixative for 20 minutes, and stained with 0.1% crystal violet for 20 minutes. After drying, images were captured and saved using an inverted microscope.

2.13. Statistical Analysis

The t-test was used to analyze the expression of EEF1A1 in KIRC tissues. Significant differences between three or more groups were analyzed by one-way analysis of variance (ANOVA). The area under the ROC curve was calculated to assess the diagnostic value of EEF1A1 for KIRC.Cox regression, Kaplan-Meier survival analysis and log-rank test were used to analyze the prognostic value of EEF1A1. Pearson correlation analysis was applied to explore the relationship between EEF1A1 expression and KIRC immune cell infiltration. The figures were graphed using GraphPad Prism and R language. A statistical significance level of P<0.05 was considered statistically significant.

3. Results

3.1. Expression Characteristics of EEF1A1 in Pan-cancer and KIRC

Pan-cancer analysis revealed that EEF1A1 was significantly overexpressed in 10 tumor types, including rectum adenocarcinoma(READ), cholangiocarcinoma (CHOL), colon adenocarcinoma(COAD), and liver hepatocellular carcinoma(LIHC), while significantly downregulated in 7 others, such as bladder urothelial carcinoma(BLCA), lung adenocarcinoma(LUAD), kidney chromophobe(KICH), lung squamous cell carcinoma (LUSC), uterine corpus endometrial carcinoma (UCEC), and breast invasive carcinoma(BRCA) (Figure 1A). Paired sample analysis corroborated high expression in CHOL, COAD, KIRC, and LIHC, but low expression in BLCA, BRCA, KICH, LUAD, LUSC, and UCEC (Figure 1B). In the TCGA-KIRC dataset, EEF1A1 mRNA levels in tumor tissues were significantly higher than in normal tissues; however, in the GSE66272, GSE36895, and GSE53757 validation cohorts, its expression was significantly lower in cancerous tissues compared to normal controls (Figure 1C-F).

3.2. Correlation with Clinical Features and Prognostic Value of EEF1A1 in KIRC

IHC staining from the HPA database showed that EEF1A1 protein expression was weaker in KIRC tissues than in normal tissues, with localization primarily in the cytoplasm and cell membrane (Figure 2A). Correlation analysis indicated no significant association between EEF1A1 expression and age or gender, but revealed a significant negative correlation with T/N/M stage and pathological grade (Figure 2B-G). Univariate Cox regression analysis identified T3-T4, N1, M1, pathological grades II-IV, age, and low EEF1A1 expression as risk factors for poor prognosis in KIRC patients (Figure 3A). Multivariate Cox regression further confirmed that low EEF1A1 expression is an independent risk factor for poor prognosis (Figure 3B). Kaplan-Meier analysis demonstrated that the low-expression group had significantly worse OS, DSS, and PFI than the high-expression group (Figure 3C-E). The constructed nomogram showed high consistency between predicted and observed 1-, 3-, and 5-year survival rates (Figure 3F-G). ROC analysis indicated high diagnostic value (AUC=0.829, Figure 3H); risk score plots suggested that lower EEF1A1 expression correlates with a higher risk of disease progression and metastasis (Figure 3I).

3.3. Association Between EEF1A1 Methylation and Prognosis

MethSurv analysis identified 15 CpG methylation sites within the EEF1A1 gene (Figure 4A). Among these, 10 CpG sites (including cg16498533, cg23873872 and cg02213340) were associated with poor prognosis, where hypermethylation correlated with reduced survival. Conversely, 3 CpG sites (cg07740989, cg26932600, and cg23883514) were associated with favorable outcomes, where hypermethylation correlated with improved prognosis (Figure 4B-G).

3.4. PPI Network, Hub Gene Identification, and Functional Enrichment

Differential expression analysis of the TCGA-KIRC profile (∣log2FC∣>0, P<0.01) identified 1,522 upregulated and 851 downregulated genes; the top 5 significant genes are shown in the volcano plot (Figure 5A). The STRING-based PPI network comprised 41 nodes and 734 edges (Figure 5B). Intersection of the top 100 co-expressed genes from GEPIA yielded 17 overlapping genes, including RPL4, EEF1B2, and RPS4X (Figure 5C). Using CytoHubba, 10 Hub genes were extracted, with RPL5, RPS18, and RPS4X showing a strong positive correlation with EEF1A1 (Figure 5D-G). GO/KEGG analysis revealed enrichment in calcium signaling, Ras, cAMP, lipid metabolism, cell adhesion, and immune response pathways (Figure 5H-I). GSEA indicated that the low EEF1A1 group was enriched in B-cell activation, complement activation, and antigen-antibody binding, suggesting its role in remodeling the tumor immune microenvironment (TIME) (Figure 5J-K).

3.5. Correlation of EEF1A1 with Immune Infiltration and Immunomodulators

Using the xCell algorithm, we found that EEF1A1 expression positively correlated with 5 immune cell types (including hematopoietic stem cells and endothelial cells) and negatively with 11 others (including NK T cells, Th1, and B cells) (Figure 6A). These correlations were further quantified by scatter plots (Figure 6B). Further analysis showed that the high-expression group had significantly higher infiltration of 15 immune cell types, including monocytes, M1/M2 macrophages, and dendritic cells (Figure 6C). ESTIMATE scores positively correlated with EEF1A1 expression (Figure 6D). Immune checkpoint analysis showed significant negative correlations with CTLA4, LAG3, PDCD1, and TIGIT, but positive correlations with CD40 and HAVCR2 (Figure 6E).Data from TISIDB showed selective correlation with TILs: negative with Th17 and MDSCs, and positive with IDC and Tcm CD8. For immunomodulators, EEF1A1 negatively correlated with CTLA4 and PDCD1 but positively with KDR and IDO1. MHC analysis showed negative correlations with TAPBP and HLA-F but positive with HLA-E. Chemokine analysis revealed negative correlations with CCL2 and CCR5 but positive with CCL28 and CX3CL1 (Figure 6F).

3.6. Correlation with Drug Sensitivity

CellMiner™ analysis showed that the high EEF1A1 expression group was significantly more sensitive to 6 common drugs, including Sorafenib, Paclitaxel, and Cisplatin (Figure 7A). Scatter plots with linear regression lines confirmed a significant negative correlation between EEF1A1 expression and the IC50 values of these drugs (Figure 7B).

3.7. Verification of EEF1A1 Expression and its Impact on Biological Behavior of KIRC

qRT-PCR results showed that EEF1A1 mRNA levels were significantly upregulated in 786-0 and A498 cells compared to HK-2 cells (Figure 8A). Western blotting revealed that the protein levels of EEF1A1 were significantly lower in cancer cells than in HK-2 cells (Figure 8B). Following the construction of EEF1A1-stably overexpressing 786-0 and A498 cells, qRT-PCR and Western blot assays confirmed the overexpression efficiency (Figure 8C). CCK-8 assays indicated that the proliferative ability of renal clear cell carcinoma cells was significantly decreased after EEF1A1 overexpression (P<0.001) (Figure 8D). Wound healing assays demonstrated a significant reduction in the migratory ability of renal clear cell carcinoma cells (P<0.001) (Figure 8E). Transwell migration and invasion assays further corroborated the role of EEF1A1 in cell motility, showing that the number of migrated and invaded cells was substantially reduced upon EEF1A1 overexpression (P<0.001) (Figure 8F, G). These results confirm the critical role of EEF1A1 in the proliferation, migration, and invasion of renal clear cell carcinoma cells.

4. Discussion

Eukaryotic Translation Elongation Factor 1 Alpha 1 (EEF1A1) is a core member of the eukaryotic translation elongation factor family. Its canonical role involves binding aminoacyl-tRNA complexes to facilitate peptide chain elongation on ribosomes during protein synthesis[3,15]. EEF1A1 is expressed in various human tissues, including the brain, lung, liver, kidney, and pancreas, and its aberrant expression plays a critical role in the tumorigenesis and progression of multiple cancers[16][18]. However, the specific role and underlying molecular mechanism of EEF1A1 in KIRC remain unclear. In this study, we systematically analyzed the expression profile, clinical significance, and potential molecular mechanism of EEF1A1 in KIRC based on public databases including TCGA and GEO. The results demonstrated that EEF1A1 was significantly downregulated in KIRC tissues and was closely associated with tumor TNM stage, pathological grade, and overall survival. High expression of EEF1A1 was identified as an independent favorable prognostic factor for KIRC patients. Functional enrichment analysis suggested that EEF1A1 may participate in tumor progression by regulating metabolic reprogramming, Ras/cAMP signaling, cytoskeleton regulation, and immune-related pathways. In the tumor microenvironment (TME) of KIRC, EEF1A1 was significantly correlated with multiple immune cell infiltration, immune checkpoints, tumor-infiltrating lymphocytes, and various immunomodulatory genes. Furthermore, high expression of EEF1A1 could markedly enhance the sensitivity of KIRC cells to clinically common drugs such as sorafenib, and its expression level was negatively correlated with drug inhibitory activity. Collectively, EEF1A1 is expected to serve as a potential biomarker for improving prognosis and guiding precise immunotherapy in KIRC patients.
In this study, we identified 10 hub genes interacting with EEF1A1, including RPL5, RPS4X, and RPS14. Most of these genes encode ribosomal proteins and exert oncogenic or tumor-suppressive roles in various cancers, such as breast cancer, glioblastoma, bladder cancer, and myelodysplastic syndromes, by regulating the p53 and c-MYC pathways or DNA repair mechanisms[18][21].GO and KEGG enrichment analyses revealed that EEF1A1 and its co-expressed genes were mainly involved in metabolic regulation (such as the switch between glycolysis and oxidative phosphorylation), maintenance of ion homeostasis, cytoskeleton remodeling (e.g., regulation of E-cadherin), and the Ras/cAMP signaling pathway[22][26].Furthermore, in terms of immune regulation, EEF1A1 can directly bind to 2'3'-cGAMP to activate the STING(Stimulator of Interferon Genes) pathway, which subsequently recruits dendritic cells and CD8+ T cells to initiate innate anti-tumor immunity[27].It is therefore speculated that EEF1A1 may affect the tumorigenesis and progression of KIRC from multiple dimensions, including metabolism, cellular structure, and signal transduction, by constructing a complex regulatory network.GSEA analysis showed that the EEF1A1 low-expression group was significantly enriched in pathways associated with abnormal immune functions, including suppressed B cell activation, impaired complement system, and disordered cytoskeleton rearrangement.Previous studies have confirmed that EEF1A1 participates in regulating antigen presentation, translation efficiency, and hypoxia-induced immunosuppression, thereby promoting CD8⁺T cell-mediated tumor killing[28]-[30].Inhibition of EEF1A1 can reduce PD-L1 expression, reverse the immunosuppressive tumor microenvironment, restore immune surveillance, and activate anti-tumor immunity[26]. These results suggest that EEF1A1 may be involved in the immune regulation of KIRC and exert a positive regulatory effect on tumor immunity in KIRC. Correlation analysis between EEF1A1 and the tumor immune microenvironment (TIME) of KIRC revealed that EEF1A1 expression was positively correlated with hematopoietic stem cells, CD4⁺ memory T cells, and other immune cell subsets. Moreover, the infiltration levels of M1-type macrophages, NK cells, and dendritic cells were significantly elevated in the EEF1A1 high-expression group.These findings indicate that EEF1A1 may exert a tumor-suppressive role in KIRC by remodeling the tumor immune microenvironment, enhancing local immune surveillance, regulating the recruitment and distribution of lymphocytes, myeloid cells, and stromal immune cells, as well as reducing immune escape and the establishment of an immunosuppressive state[31]-[36].Regarding immune checkpoints, EEF1A1 was significantly negatively correlated with multiple key inhibitory immune checkpoints, including CTLA4, LAG3, PDCD1, and TIGIT, while positively correlated with the co-stimulatory molecule CD40. High expression of EEF1A1 may reduce T-cell exhaustion by downregulating these key inhibitory immune checkpoints and restore the anti-tumor immune functions of effector T cells, NK cells, and other immune cells, thereby inhibiting tumor progression[37][42].CD40 contributes to antigen presentation, activation of T and B cells, and enhancement of immune memory and immune surveillance, and its high expression is closely associated with strengthened anti-tumor immunity[43,44].In terms of tumor-infiltrating lymphocytes (TILs) and immunoregulatory factors, high EEF1A1 expression modulated the infiltration of tumor immune cells, including MDSCs, IDCs, Tgd cells, and CD4⁺Tem cells, enhanced CD8⁺T-cell function, and suppressed the formation of an immunosuppressive microenvironment[7,28,45,46].Furthermore, EEF1A1 regulated the expression of MHC molecules (HLA-F, HLA-DOB, HLA-E, and HLA-DRA), chemokines (CCL2, CCL5, CCL28, CX3CL1, etc.) and their receptors (CCR5, CCR8, CCR6, CX3CR1,etc.), inhibited immunosuppressive signal transduction, strengthened anti-tumor immune responses, and reshaped the landscape of tumor immune cell infiltration. In this way, EEF1A1 constructs an anti-tumor immune microenvironment characterized by low suppression, high surveillance, and stable homeostasis, thus exerting a tumor-suppressive role in KIRC[47][53].These findings also provide a solid theoretical basis for EEF1A1 as a potential target for immunotherapy of KIRC.
Another significant highlight of this study is the exploration of EEF1A1 as a potential clinical biomarker for predicting precision drug sensitivity in KIRC. Specifically, high EEF1A1 expression significantly enhanced the sensitivity of KIRC cells to agents targeting the cell cycle (e.g., Paclitaxel) and DNA damage repair pathways, while showing no significant association with mTOR inhibitors or immunotherapy. These findings suggest that EEF1A1 may differentially regulate apoptotic pathways or DNA damage checkpoints through its canonical translation elongation function. This discovery not only provides a novel predictive indicator for individualized chemotherapy in KIRC patients but also offers a new breakthrough for overcoming drug resistance and identifying sensitization targets in advanced renal cancer.
To further elucidate the functional role of EEF1A1, we conducted in vitro functional assays using renal clear cell carcinoma (786-0 and A498) cell lines. Our results demonstrated that EEF1A1 overexpression significantly inhibited the proliferation, migration, and invasion capabilities of renal clear cell carcinoma cells. These findings provide a solid experimental basis for revealing the specific mechanism of EEF1A1 in the development and progression of kidney renal clear cell carcinoma, while also offering important theoretical references and experimental evidence for future research.
However, we acknowledge certain limitations in this study. First, in vivo animal experiments are currently lacking to further validate the impact of EEF1A1 on the biological behavior of KIRC tumors. Second, although we explored the function and value of EEF1A1 in immune infiltration through bioinformatics analysis, we have not yet experimentally validated the related metabolic and immune pathways it regulates, nor the specific interaction mechanisms with immune cells. Finally, the upstream and downstream regulatory relationships between EEF1A1 and specific signaling pathways have not been fully explored in this study, and the relevant molecular mechanisms remain to be further elucidated by future functional experiments.

Author Contributions

Q.Y.: Database analysis. X. M. and S.S.: Research protocol assistance.Q.Y.: Writing - Initial Draft. Q.Y.and X.C.: Writing-Review and Editing. X. M. and Y.Z.: In vitro cell experiment guidance. All authors have contributed to this article and approved the submitted version.

Funding

No funding was received.

Institutional Review Board Statement

This study does not involve research on humans or animals, therefore ethical approval is not required.

Data Availability Statement

The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request

Acknowledgments

We thank the Xiantao Academic Online Analysis Platform for providing assistance in the analysis of TCGA and GEO data.

Conflicts of Interest

The authors declare no competing interests.

References

  1. Rose, T.L.; Kim, W.Y. Renal Cell Carcinoma: A Review. JAMA 2024, 332, 1001–1010. [Google Scholar] [CrossRef] [PubMed]
  2. Bahadoram, S.; Davoodi, M.; Hassanzadeh, S.; Bahadoram, M.; Barahman, M.; Mafakher, L. Renal cell carcinoma: an overview of the epidemiology, diagnosis, and treatment. G. Ital. Nefrol. Organo Uff. Della Soc. Ital. Nefrol. 2022, 39, 2022–vol3. [Google Scholar]
  3. Browne, G.J.; Proud, C.G. Regulation of peptide-chain elongation in mammalian cells. Eur. J. Biochem. 2002, 269, 5360–5368. [Google Scholar] [CrossRef] [PubMed]
  4. Abbas, W.; Kumar, A.; Herbein, G. The eEF1A Proteins: At the Crossroads of Oncogenesis, Apoptosis, and Viral Infections. Front Oncol. 2015, 5. [Google Scholar] [CrossRef] [PubMed]
  5. Blanch, A.; Robinson, F.; Watson, I.R.; Cheng, L.S.; Irwin, M.S. Eukaryotic translation elongation factor 1-alpha 1 inhibits p53 and p73 dependent apoposis and chemotherapy sensitivity. PLoS ONE 2013, 8, e66436. [Google Scholar] [CrossRef] [PubMed]
  6. Tarrant, D.J.; Stirpe, M.; Rowe, M.; Howard, M.J.; von der Haar, T.; Gourlay, C.W. Inappropriate expression of the translation elongation factor 1A disrupts genome stability and metabolism. J. Cell Sci. 2016, 129, 4455–4465. [Google Scholar] [CrossRef] [PubMed]
  7. Wang, X.; Shi, A.; Liu, J.; et al. CDCA5-EEF1A1 interaction promotes progression of clear cell renal cell carcinoma by regulating mTOR signaling. Cancer Cell Int. 2024, 24, 147. [Google Scholar] [CrossRef] [PubMed]
  8. Cui, H.; Li, H.; Wu, H.; et al. A novel 3’tRNA-derived fragment tRF-Val promotes proliferation and inhibits apoptosis by targeting EEF1A1 in gastric cancer. Cell Death Dis. 2022, 13, 471. [Google Scholar] [CrossRef] [PubMed]
  9. Xing, L.; Wu, T.; Xu, H.; et al. Single-Cell Transcriptomics Uncover EEF1A1-Driven Ubiquitination Dysregulation in T Cell Exhaustion and SLE Pathogenesis via STAT1-Mediated Th1/Th2 Imbalance. Mediat. Inflamm. 2025, 2025, 3708640. [Google Scholar] [CrossRef] [PubMed]
  10. Zhao, J.; Huo, Q.; Zhang, J.; et al. UCHL3 promotes hepatocellular carcinoma progression by stabilizing EEF1A1 through deubiquitination. Biol. Direct 2024, 19, 53. [Google Scholar] [CrossRef] [PubMed]
  11. Su, D.; Wang, R.; Chen, G.; et al. FBXO32 Stimulates Protein Synthesis to Drive Pancreatic Cancer Progression and Metastasis. Cancer Res. 2024, 84, 2607–2625. [Google Scholar] [CrossRef] [PubMed]
  12. Chen, J.; Ning, D.; Du, P.; et al. USP11 potentiates HGF/AKT signaling and drives metastasis in hepatocellular carcinoma. Oncogene 2024, 43, 123–135. [Google Scholar] [CrossRef] [PubMed]
  13. Wu, A.; Tang, J.; Guo, Z.; et al. Long Non-Coding RNA CRYBG3 Promotes Lung Cancer Metastasis via Activating the eEF1A1/MDM2/MTBP Axis. Int. J. Mol. Sci. 2021, 22, 3211. [Google Scholar] [CrossRef] [PubMed]
  14. J, Y.; Ry, C.; Yj, L.; et al. Identification of EEF1A1 as a therapeutic target in TNBC: Anticancer action of a novel Penicillide-derived inhibitor through ribosomal protein regulation. Bioorganic Chem. 2026, 172. [Google Scholar] [CrossRef] [PubMed]
  15. Li, X.; Chen, N.; Zhou, L.; et al. Genome-wide target interactome profiling reveals a novel EEF1A1 epigenetic pathway for oncogenic lncRNA MALAT1 in breast cancer. Am. J. Cancer Res. 2019, 9, 714–729. [Google Scholar] [PubMed]
  16. Lin, K.W.; Souchelnytskyi, S. Translational connection of TGFβ signaling: Phosphorylation of eEF1A1 by TβR-I inhibits protein synthesis. Small GTPases 2011, 2, 104–108. [Google Scholar] [CrossRef] [PubMed]
  17. Negrutskii, B.S.; Porubleva, L.V.; Malinowska, A.; Novosylna, O.V.; Dadlez, M.; Knudsen, C.R. Understanding functions of eEF1 translation elongation factors beyond translation. A proteomic approach. Adv. Protein Chem. Struct. Biol. 2024, 138, 67–99. [Google Scholar] [CrossRef] [PubMed]
  18. Fancello, L.; Kampen, K.R.; Hofman, I.J.F.; Verbeeck, J.; De Keersmaecker, K. The ribosomal protein gene RPL5 is a haploinsufficient tumor suppressor in multiple cancer types. Oncotarget 2017, 8, 14462–14478. [Google Scholar] [CrossRef] [PubMed]
  19. Paquet, É.R.; Hovington, H.; Brisson, H.; et al. Low level of the X-linked ribosomal protein S4 in human urothelial carcinomas is associated with a poor prognosis. Biomark. Med. 2015, 9, 187–197. [Google Scholar] [CrossRef] [PubMed]
  20. El Khoury, W.; Nasr, Z. Deregulation of ribosomal proteins in human cancers. Biosci. Rep. 2021, 41, BSR20211577. [Google Scholar] [CrossRef] [PubMed]
  21. Zhou, X.; Hao, Q.; Liao, J.; Zhang, Q.; Lu, H. Ribosomal protein S14 unties the MDM2-p53 loop upon ribosomal stress. Oncogene 2013, 32, 388–396. [Google Scholar] [CrossRef] [PubMed]
  22. Li, M.; Ruan, B.; Wei, J.; et al. ACYP2 contributes to malignant progression of glioma through promoting Ca2+ efflux and subsequently activating c-Myc and STAT3 signals. J. Exp. Clin. Cancer Res. CR 2020, 39, 106. [Google Scholar] [CrossRef] [PubMed]
  23. Wilson, R.B.; Kozlov, A.M.; Hatam Tehrani, H.; et al. Elongation factor 1A1 regulates metabolic substrate preference in mammalian cells. J. Biol. Chem. 2024, 300, 105684. [Google Scholar] [CrossRef] [PubMed]
  24. Legátová, A.; Pelantová, M.; Rösel, D.; Brábek, J.; Škarková, A. The emerging role of microtubules in invasion plasticity. Front Oncol. 2023, 13, 1118171. [Google Scholar] [CrossRef] [PubMed]
  25. Zhang, Y.; Su, W.; Ji, X.; et al. PCSK9 promotes progression of anaplastic thyroid cancer through E-cadherin endocytosis. Cell Death Dis. 2025, 16, 362. [Google Scholar] [CrossRef] [PubMed]
  26. Zhang, H.; Cai, J.; Yu, S.; Sun, B.; Zhang, W. Anticancer Small-Molecule Agents Targeting Eukaryotic Elongation Factor 1A: State of the Art. Int. J. Mol. Sci. 2023, 24, 5184. [Google Scholar] [CrossRef] [PubMed]
  27. Hou, Y.; Lu, H.; Li, J.; et al. A photoaffinity labeling strategy identified EF1A1 as a binding protein of cyclic dinucleotide 2’3’-cGAMP. Cell Chem. Biol. 2022, 29, 133–144.e20. [Google Scholar] [CrossRef] [PubMed]
  28. Zhang, W.; Wang, J.; Shan, C. The eEF1A protein in cancer: Clinical significance, oncogenic mechanisms, and targeted therapeutic strategies. Pharmacol. Res. 2024, 204, 107195. [Google Scholar] [CrossRef] [PubMed]
  29. Xu, B.; Liu, L.; Song, G. Functions and Regulation of Translation Elongation Factors. Front Mol. Biosci. 2021, 8, 816398. [Google Scholar] [CrossRef] [PubMed]
  30. Estephan, H.; Tailor, A.; Parker, R.; et al. Hypoxia promotes tumor immune evasion by suppressing MHC-I expression and antigen presentation. EMBO J. 2025, 44, 903–922. [Google Scholar] [CrossRef] [PubMed]
  31. Liao, Q.; Jin, Z.; Long, H.; Zhu, B. Deciphering cancer complexity: perspective on hematopoietic remodeling-mediated immunosuppression. Oncogene 2025, 44, 1230–1233. [Google Scholar] [CrossRef] [PubMed]
  32. Xu, J.; Ding, L.; Mei, J.; et al. Dual roles and therapeutic targeting of tumor-associated macrophages in tumor microenvironments. Signal Transduct. Target Ther. 2025, 10, 268. [Google Scholar] [CrossRef] [PubMed]
  33. Fang, J.; Lu, Y.; Zheng, J.; et al. Exploring the crosstalk between endothelial cells, immune cells, and immune checkpoints in the tumor microenvironment: new insights and therapeutic implications. Cell Death Dis. 2023, 14, 586. [Google Scholar] [CrossRef] [PubMed]
  34. Yu, J.; Fu, L.; Wu, R.; et al. Immunocytes in the tumor microenvironment: recent updates and interconnections. Front Immunol. 2025, 16. [Google Scholar] [CrossRef] [PubMed]
  35. Koelsch, N.; Manjili, M.H. Moving beyond cytotoxicity in cancer immunotherapy: embracing tumor microenvironment remodeling for durable control. Br. J. Cancer 2025, 133, 1233–1240. [Google Scholar] [CrossRef] [PubMed]
  36. Zhu, H.; Shao, J.; Shao, L.; et al. Immunotherapy strategies targeting tumor-associated macrophages and their mechanisms of action in tumor progression. Front Immunol. 2025, 16, 1680455. [Google Scholar] [CrossRef] [PubMed]
  37. S, X.; J X., S. L. Unravelling T cell exhaustion through co-inhibitory receptors and its transformative role in cancer immunotherapy. Clin. Transl. Med. 2025, 15. [Google Scholar] [CrossRef]
  38. Perales, O.; Jilaveanu, L.; Adeniran, A.; et al. TIGIT expression in renal cell carcinoma infiltrating T cells is variable and inversely correlated with PD-1 and LAG3. Cancer Immunol. Immunother. CII 2024, 73, 192. [Google Scholar] [CrossRef] [PubMed]
  39. Maeda, T.K.; Sugiura, D.; Okazaki, I.M.; Maruhashi, T.; Okazaki, T. Atypical motifs in the cytoplasmic region of the inhibitory immune co-receptor LAG-3 inhibit T cell activation. J. Biol. Chem. 2019, 294, 6017–6026. [Google Scholar] [CrossRef] [PubMed]
  40. Nguyen, D.T.; Prieto, L.I.; Zhang, C.; et al. Protein kinase Cι dictates tumor trajectory, cell plasticity, and immune surveillance in lung adenocarcinoma. Cell Rep. 2025, 44, 116606. [Google Scholar] [CrossRef] [PubMed]
  41. Wang, Y.; Zhang, H.; Zhan, Y.; Li, Z.; Li, S.; Guo, S. Comprehensive in silico analysis of prognostic and immune infiltrates for FGFs in human ovarian cancer. J. Ovarian Res. 2024, 17, 197. [Google Scholar] [CrossRef] [PubMed]
  42. Ruan, R.; Li, L.; Li, X.; et al. Unleashing the potential of combining FGFR inhibitor and immune checkpoint blockade for FGF/FGFR signaling in tumor microenvironment. Mol. Cancer 2023, 22, 60. [Google Scholar] [CrossRef] [PubMed]
  43. Charpentier, M.; Formenti, S.; Demaria, S. CD40 agonism improves anti-tumor T cell priming induced by the combination of radiation therapy plus CTLA4 inhibition and enhances tumor response. Oncoimmunology 2023, 12, 2258011. [Google Scholar] [CrossRef] [PubMed]
  44. Wennhold, K.; Shimabukuro-Vornhagen, A.; von Bergwelt-Baildon, M. B Cell-Based Cancer Immunotherapy. Transfus. Med. Hemotherapy Off. Organ Dtsch. Ges. Transfusionsmedizin Immunhamatol. 2019, 46, 36–46. [Google Scholar] [CrossRef] [PubMed]
  45. Chen, S.L.; Lu, S.X.; Liu, L.L.; et al. eEF1A1 Overexpression Enhances Tumor Progression and Indicates Poor Prognosis in Hepatocellular Carcinoma. Transl. Oncol. 2018, 11, 125–131. [Google Scholar] [CrossRef] [PubMed]
  46. Liposomal Elongation Factor-1α Triggers Effector CD4 and CD8 T Cells for Induction of Long-Lasting Protective Immunity against Visceral Leishmaniasis - PubMed. Available online: https://pubmed.ncbi.nlm.nih.gov/29441060/.
  47. Jd, B.F.; J, B.A.; K, M.M.; et al. Targeting of Non-Classical Human Leukocyte Antigens as Novel Therapeutic Strategies in Cancer. Cancers 2024, 16. [Google Scholar] [CrossRef] [PubMed]
  48. Li, Y.; Luo, J.; Tian, D.; et al. HLA-DOB: A Key “Coordinator” Between Cutaneous Melanoma and Psoriasis. J. Cancer 2025, 16, 3415–3424. [Google Scholar] [CrossRef] [PubMed]
  49. Tumor-derived CCL5 recruits cancer-associated fibroblasts and promotes tumor cell proliferation in esophageal squamous cell carcinoma - PMC. Available online: https://pmc.ncbi.nlm.nih.gov/articles/PMC10330279/.
  50. D X, X L, S K, Y G, C Z, H C. CCL19/CCR7 drives regulatory T cell migration and indicates poor prognosis in gastric cancer. BMC Cancer 2023, 23. [CrossRef] [PubMed]
  51. S L, N. Z.; Y Y, T. L. Transcriptionally activates CCL28 expression to inhibit M2 polarization of macrophages and prevent immune escape in colorectal cancer cells. Transl. Oncol. 2024, 40. [Google Scholar] [CrossRef]
  52. Ej, K.; Hj, C. Systematic omics analysis identifies CCR6 as a therapeutic target to overcome cancer resistance to EGFR inhibitors. iScience 2024, 27. [Google Scholar] [CrossRef] [PubMed]
  53. Lepsenyi, M.; Algethami, N.; Al-Haidari, A.A.; et al. CXCL2-CXCR2 axis mediates αV integrin-dependent peritoneal metastasis of colon cancer cells. Clin. Exp. Metastasis 2021, 38, 401–410. [Google Scholar] [CrossRef] [PubMed]
Figure 1. Expression of EEF1A1 in pan-cancer. Note: (A) Expression levels of EEF1A1 in various types of cancers based on the TIMER2.0 database; (B) Comparative analysis of EEF1A1 expression in 23 tumor tissues and normal paired normal tissues; (C) Expression differences of EEF1A1 in KIRC and paracancerous tissues in the TCGA database; (D)-(F)Expression differences of EEF1A1 in KIRC and paracancerous tissues in three different datasets based on the GEO database. *P < 0.05, **P < 0.01, ***P < 0.001. .
Figure 1. Expression of EEF1A1 in pan-cancer. Note: (A) Expression levels of EEF1A1 in various types of cancers based on the TIMER2.0 database; (B) Comparative analysis of EEF1A1 expression in 23 tumor tissues and normal paired normal tissues; (C) Expression differences of EEF1A1 in KIRC and paracancerous tissues in the TCGA database; (D)-(F)Expression differences of EEF1A1 in KIRC and paracancerous tissues in three different datasets based on the GEO database. *P < 0.05, **P < 0.01, ***P < 0.001. .
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Figure 2. Expression of EEF1A1 in KIRC and correlation with clinical variables. Note: (A) EEF1A1 protein expression levels in KIRC and paracancerous tissues in the HPA database; (B)-(G)Graphical representation of the association between EEF1A1 mRNA expression and various clinical variables in KIRC patients, including gender(B),age (C), T stages (D),N stages (E),M stages (F), and pathological grades(G).
Figure 2. Expression of EEF1A1 in KIRC and correlation with clinical variables. Note: (A) EEF1A1 protein expression levels in KIRC and paracancerous tissues in the HPA database; (B)-(G)Graphical representation of the association between EEF1A1 mRNA expression and various clinical variables in KIRC patients, including gender(B),age (C), T stages (D),N stages (E),M stages (F), and pathological grades(G).
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Figure 3. Prognostic value of EEF1A1 expression in KIRC. Note: (A) Univariate Cox regression analysis of clinical pathological characteristics in KIRC patients; (B) Multivariate Cox regression analysis of clinical pathological characteristics in KIRC patients; (C)-(E) Kaplan-Meier survival curves comparing the overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) for patients with different levels of EEF1A1 expression; (F) Prognostic nomogram based on clinical variables and EEF1A1 expression to predict overall survival; (G) Calibration curves validating the nomogram’s predictive accuracy for KIRC patients survival of 1-, 3-, and 5-year; (H)ROC curve representing the diagnostic potential of EEF1A1 in KIRC; (I) Risk factor plot displaying the prognostic model’s risk score and stratification.
Figure 3. Prognostic value of EEF1A1 expression in KIRC. Note: (A) Univariate Cox regression analysis of clinical pathological characteristics in KIRC patients; (B) Multivariate Cox regression analysis of clinical pathological characteristics in KIRC patients; (C)-(E) Kaplan-Meier survival curves comparing the overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) for patients with different levels of EEF1A1 expression; (F) Prognostic nomogram based on clinical variables and EEF1A1 expression to predict overall survival; (G) Calibration curves validating the nomogram’s predictive accuracy for KIRC patients survival of 1-, 3-, and 5-year; (H)ROC curve representing the diagnostic potential of EEF1A1 in KIRC; (I) Risk factor plot displaying the prognostic model’s risk score and stratification.
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Figure 4. The Association between EEF1A1 DNA methylation and prognosis of KIRC patients. (A) The association between EEF1A1 expression and methylation levels in KIRC from the MethSurv database; (B)-(G) Kaplan-Meier survival curves showing the prognostic value of methylation levels at the EEF1A1 CpG sites in KIRC Patients.
Figure 4. The Association between EEF1A1 DNA methylation and prognosis of KIRC patients. (A) The association between EEF1A1 expression and methylation levels in KIRC from the MethSurv database; (B)-(G) Kaplan-Meier survival curves showing the prognostic value of methylation levels at the EEF1A1 CpG sites in KIRC Patients.
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Figure 5. Functional enrichment analysis of EEF1A1 interaction and expression related genes. Note: (A) Volcano plot showing the top 5 significantly up- and down-regulated genes from TCGA-KIRC differential expression analysis (|log₂FC|>0, P<0.01); (B) The PPI network is constructed by the STRING database with 40 proteins which were experimentally verified binding to EEF1A1; (C) Venn diagram representing the intersection of EEF1A1 interaction and expression-related genes; (D) Top 10 hub genes based on the MCC ranking by the CytoHubba plugin; (E)-(G) Expression correlation plots for the top 3 genes most strongly correlated with EEF1A1; (H)-(I) GO and KEGG enrichment analysis of EEF1A1 interaction and expression-related; (J)-(K) Gene Set Enrichment Analysis (GSEA) for KIRC patient cohorts stratified by EEF1A1 expression levels.
Figure 5. Functional enrichment analysis of EEF1A1 interaction and expression related genes. Note: (A) Volcano plot showing the top 5 significantly up- and down-regulated genes from TCGA-KIRC differential expression analysis (|log₂FC|>0, P<0.01); (B) The PPI network is constructed by the STRING database with 40 proteins which were experimentally verified binding to EEF1A1; (C) Venn diagram representing the intersection of EEF1A1 interaction and expression-related genes; (D) Top 10 hub genes based on the MCC ranking by the CytoHubba plugin; (E)-(G) Expression correlation plots for the top 3 genes most strongly correlated with EEF1A1; (H)-(I) GO and KEGG enrichment analysis of EEF1A1 interaction and expression-related; (J)-(K) Gene Set Enrichment Analysis (GSEA) for KIRC patient cohorts stratified by EEF1A1 expression levels.
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Figure 6. Correlation of EEF1A1 expression with immune cell infiltration and immune checkpoint in KIRC. Note:(A) Lollipop plot of the correlation between EEF1A1 expression and 33 immune cell types infiltration; (B) Scatter plots showing the correlation between EEF1A1 expression and various immune cells; (C) Dot plots of immune infiltration scores for high and low expression of EEF1A1; (D) Bubble plot of the correlation between the EEF1A1 and ImmuneScore, StromalScore, and ESTIMATEScore; (E) Heatmap of the correlation between EEF1A1 and 18 common immune checkpoint-related genes; (F) Correlation of EEF1A1 expression with tumor-infiltrating lymphocytes (TILs), immune modulators (including immunoinhibitors immunostimulators, and MHC class-related molecules),as well as chemokines and their receptors.
Figure 6. Correlation of EEF1A1 expression with immune cell infiltration and immune checkpoint in KIRC. Note:(A) Lollipop plot of the correlation between EEF1A1 expression and 33 immune cell types infiltration; (B) Scatter plots showing the correlation between EEF1A1 expression and various immune cells; (C) Dot plots of immune infiltration scores for high and low expression of EEF1A1; (D) Bubble plot of the correlation between the EEF1A1 and ImmuneScore, StromalScore, and ESTIMATEScore; (E) Heatmap of the correlation between EEF1A1 and 18 common immune checkpoint-related genes; (F) Correlation of EEF1A1 expression with tumor-infiltrating lymphocytes (TILs), immune modulators (including immunoinhibitors immunostimulators, and MHC class-related molecules),as well as chemokines and their receptors.
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Figure 7. Drug sensitivity analyses. (A) Violin plots combined with boxplots show the distribution of log2-transformed IC50 values for 8 commonly used anticancer drugs (Axitinib, Cisplatin, Docetaxel, Gemcitabine, Oxaliplatin, Paclitaxel, Rapamycin, and Sorafenib) in the EEF1A1 high-expression (red) and low-expression (blue) groups.A higher log2 IC50 value indicates lower drug sensitivity (greater drug resistance), while a lower value indicates higher sensitivity;(B) the relationships between EEF1A1 expression levels and the IC50 values (μM) of six anticancer drugs, including Sorafenib, Cisplatin, Docetaxel, Gemcitabine, Oxaliplatin, and Paclitaxel. Statistical significance between the two groups was assessed, and significance levels are marked as *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001.
Figure 7. Drug sensitivity analyses. (A) Violin plots combined with boxplots show the distribution of log2-transformed IC50 values for 8 commonly used anticancer drugs (Axitinib, Cisplatin, Docetaxel, Gemcitabine, Oxaliplatin, Paclitaxel, Rapamycin, and Sorafenib) in the EEF1A1 high-expression (red) and low-expression (blue) groups.A higher log2 IC50 value indicates lower drug sensitivity (greater drug resistance), while a lower value indicates higher sensitivity;(B) the relationships between EEF1A1 expression levels and the IC50 values (μM) of six anticancer drugs, including Sorafenib, Cisplatin, Docetaxel, Gemcitabine, Oxaliplatin, and Paclitaxel. Statistical significance between the two groups was assessed, and significance levels are marked as *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001.
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Figure 8. Validation of EEF1A1 expression and its impact on the proliferation, migration, and invasion of kidney renal clear cell carcinom. Note: (A)-(B) Expression levels of EEF1A1 mRNA and protein in human renal tubular epithelial cells (HK-2) and renal clear cell carcinoma cell lines (786-0 and A498); (C)-(D)The overexpression efficiency of EEF1A1 in renal clear cell carcinoma cell lines (786-0 and A498) was assessed using quantitative real-time polymerase chain reaction (qRT-PCR) and Western blotting; (E) CCK-8 assay was used to evaluate cell proliferation; (F) Wound healing assay was performed to determine cell migration capability; (G)-(H) Transwell migration and invasion assay were used to evaluate the migratory and invasive capabilities of cell, respectively. Statistical significance between the two groups was assessed, and significance levels are marked as *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001.
Figure 8. Validation of EEF1A1 expression and its impact on the proliferation, migration, and invasion of kidney renal clear cell carcinom. Note: (A)-(B) Expression levels of EEF1A1 mRNA and protein in human renal tubular epithelial cells (HK-2) and renal clear cell carcinoma cell lines (786-0 and A498); (C)-(D)The overexpression efficiency of EEF1A1 in renal clear cell carcinoma cell lines (786-0 and A498) was assessed using quantitative real-time polymerase chain reaction (qRT-PCR) and Western blotting; (E) CCK-8 assay was used to evaluate cell proliferation; (F) Wound healing assay was performed to determine cell migration capability; (G)-(H) Transwell migration and invasion assay were used to evaluate the migratory and invasive capabilities of cell, respectively. Statistical significance between the two groups was assessed, and significance levels are marked as *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001.
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Table 1. The sequence of primers.
Table 1. The sequence of primers.
Gene forward primer(5’-3’) reverse primer(5’-3’)
EEF1A1 ACCACTACTGGCCATCTGATCTA GTTTATCCAAGACCCAGGCATAC
GAPDH AAGCTCATTTCCTGGTATGACAA CTTACTCCTTGGAGGCCATGT
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